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{{UBERON
{{UBERON
|id=UBERON:0005095
|alt_id=
|name=kidney rudiment
|namespace=
|def="." [GO:0072003]
|xref=
|is_a=UBERON:0005423
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="." [GO:0072003]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0007687
|develops_from=UBERON:0007687
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005095
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|name=kidney rudiment
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922
|part_of=UBERON:0000922
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 17:50, 12 September 2014

Name:kidney rudiment
Namespace:FANTOM
Definition:"." [GO:0072003]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0007687(kidney field)
part_of:UBERON:0000922(embryo)



Children

develops from:UBERON:0002113 (kidney),UBERON:0002120 (pronephros)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005095 (kidney rudiment), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.73e-86FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_e3531214d354927045ce1bb0ec46eee2p4@PAX2
1.73e-86FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_e3531214d354927045ce1bb0ec46eee2p4@PAX2
2.28e-80FFCP PHASE2:Mm9::chr2:74542680..74542705,+#_3637be11cb55e781d755953cde98f80ap6@Hoxd8
2.28e-80FFCP PHASE1:Mm9::chr2:74542680..74542705,+#_3637be11cb55e781d755953cde98f80ap6@Hoxd8
3.64e-74FFCP PHASE1:Mm9::chr2:74542589..74542602,+#_01cc9b246eb8303d9144654769a08cefp8@Hoxd8
3.64e-74FFCP PHASE2:Mm9::chr2:74542589..74542602,+#_01cc9b246eb8303d9144654769a08cefp8@Hoxd8
5.03e-73FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_435b9f0f81898ced9be9855496bb3665p3@PAX2
5.03e-73FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_435b9f0f81898ced9be9855496bb3665p3@PAX2
3.13e-70FFCP PHASE2:Hg19::chr2:693380..693398,+#_1f2d384266eff90f48152110ddae97c9p@chr2:693380..693398, +
3.13e-70FFCP PHASE1:Hg19::chr2:693380..693398,+#_1f2d384266eff90f48152110ddae97c9p@chr2:693380..693398, +
5.44e-68FFCP PHASE2:Mm9::chr19:44824107..44824111,-#_7b6c4ea94d76fa61af020592b14914a3p@chr19:44824107..44824111, -
5.44e-68FFCP PHASE1:Mm9::chr19:44824107..44824111,-#_7b6c4ea94d76fa61af020592b14914a3p@chr19:44824107..44824111, -
6.57e-66FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_7943c70c07a617256386568ec8dd853ap7@HOXA10
6.57e-66FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_7943c70c07a617256386568ec8dd853ap7@HOXA10
2.27e-64FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_89047ff3c13ebae9531b5bb5f51f0ae4p2@PAX2
2.27e-64FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_89047ff3c13ebae9531b5bb5f51f0ae4p2@PAX2
2.61e-63FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_2b8deaf92ba36c1d96b35a842382086ap4@AIF1L
2.61e-63FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_2b8deaf92ba36c1d96b35a842382086ap4@AIF1L
9.07e-63FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_1ef16c24dd20c7253af520179b9dbdb7p1@ENST00000418041, p1@ENST00000443104
9.07e-63FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_1ef16c24dd20c7253af520179b9dbdb7p1@ENST00000418041, p1@ENST00000443104
1.43e-62FFCP PHASE1:Mm9::chr10:3291561..3291580,+#_83225e4782008112640f6816c5bd3704p@chr10:3291561..3291580, +
1.43e-62FFCP PHASE2:Mm9::chr10:3291561..3291580,+#_83225e4782008112640f6816c5bd3704p@chr10:3291561..3291580, +
7.58e-62FFCP PHASE2:Mm9::chr19:44821149..44821161,+#_b2cfb5928b0cd4fa913f10205b328d24p@chr19:44821149..44821161, +
7.58e-62FFCP PHASE1:Mm9::chr19:44821149..44821161,+#_b2cfb5928b0cd4fa913f10205b328d24p@chr19:44821149..44821161, +
7.58e-62FFCP PHASE2:Mm9::chr19:44899724..44899728,+#_b2cfb5928b0cd4fa913f10205b328d24p@chr19:44899724..44899728, +
7.58e-62FFCP PHASE1:Mm9::chr19:44899724..44899728,+#_b2cfb5928b0cd4fa913f10205b328d24p@chr19:44899724..44899728, +
4.78e-61FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_1367aa8a6db839b4577636680fa3fe45p4@MEGF11
4.78e-61FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_1367aa8a6db839b4577636680fa3fe45p4@MEGF11
1.07e-59FFCP PHASE1:Mm9::chr8:107148422..107148433,+#_1bc486457fdcae24ff46b0d1c8b4c464p@chr8:107148422..107148433, +
1.07e-59FFCP PHASE2:Mm9::chr8:107148422..107148433,+#_1bc486457fdcae24ff46b0d1c8b4c464p@chr8:107148422..107148433, +
6.23e-58FFCP PHASE2:Mm9::chr10:50689167..50689171,+#_d2516dd00f0000cd8d820234cc6d53f4p@chr10:50689167..50689171, +
6.23e-58FFCP PHASE1:Mm9::chr10:50689167..50689171,+#_d2516dd00f0000cd8d820234cc6d53f4p@chr10:50689167..50689171, +
8.0e-58FFCP PHASE1:Mm9::chr5:24755801..24755819,+#_59b521c3761f3a1daa4af4182da96e4bp@chr5:24755801..24755819, +
8.0e-58FFCP PHASE2:Mm9::chr5:24755801..24755819,+#_59b521c3761f3a1daa4af4182da96e4bp@chr5:24755801..24755819, +
1.03e-57FFCP PHASE1:Mm9::chr19:59532611..59532623,+#_eefefe092d6698eb433a1f7f5836cd94p@chr19:59532611..59532623, +
1.03e-57FFCP PHASE2:Mm9::chr19:59532611..59532623,+#_eefefe092d6698eb433a1f7f5836cd94p@chr19:59532611..59532623, +
2.2e-56FFCP PHASE1:Mm9::chr4:44956599..44956663,+#_8de1bfdd0726fff8b4026e79c5965f55p1@ENSMUST00000154177
2.2e-56FFCP PHASE2:Mm9::chr4:44956599..44956663,+#_8de1bfdd0726fff8b4026e79c5965f55p1@ENSMUST00000154177
9.89e-56FFCP PHASE2:Mm9::chr7:126785928..126785945,-#_3404a78f3273636b8cfc82454777e178p3@uc009jll.1
9.89e-56FFCP PHASE2:Mm9::chr8:118959620..118959632,-#_3404a78f3273636b8cfc82454777e178p@chr8:118959620..118959632, -
9.89e-56FFCP PHASE2:Mm9::chr10:51915118..51915138,-#_3404a78f3273636b8cfc82454777e178p4@Ros1
9.89e-56FFCP PHASE2:Mm9::chr2:74971765..74971779,-#_3404a78f3273636b8cfc82454777e178p@chr2:74971765..74971779, -
9.89e-56FFCP PHASE2:Mm9::chr1:89952042..89952053,+#_3404a78f3273636b8cfc82454777e178p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
9.89e-56FFCP PHASE1:Mm9::chr5:5694436..5694447,-#_3404a78f3273636b8cfc82454777e178p7@Steap2
9.89e-56FFCP PHASE2:Mm9::chr5:5694436..5694447,-#_3404a78f3273636b8cfc82454777e178p7@Steap2
9.89e-56FFCP PHASE2:Mm9::chr10:79277411..79277429,+#_3404a78f3273636b8cfc82454777e178p@chr10:79277411..79277429, +
9.89e-56FFCP PHASE1:Mm9::chr2:74971765..74971779,-#_3404a78f3273636b8cfc82454777e178p@chr2:74971765..74971779, -
9.89e-56FFCP PHASE1:Mm9::chr7:31244771..31244782,+#_3404a78f3273636b8cfc82454777e178p2@Nphs1
9.89e-56FFCP PHASE1:Mm9::chr10:39251651..39251690,+#_3404a78f3273636b8cfc82454777e178p@chr10:39251651..39251690, +
9.89e-56FFCP PHASE1:Mm9::chr10:51915118..51915138,-#_3404a78f3273636b8cfc82454777e178p4@Ros1
9.89e-56FFCP PHASE1:Mm9::chr7:126785928..126785945,-#_3404a78f3273636b8cfc82454777e178p3@uc009jll.1
9.89e-56FFCP PHASE1:Mm9::chr10:79277411..79277429,+#_3404a78f3273636b8cfc82454777e178p@chr10:79277411..79277429, +
9.89e-56FFCP PHASE1:Mm9::chr19:17554168..17554181,+#_3404a78f3273636b8cfc82454777e178p@chr19:17554168..17554181, +
9.89e-56FFCP PHASE2:Mm9::chr19:17554168..17554181,+#_3404a78f3273636b8cfc82454777e178p@chr19:17554168..17554181, +
9.89e-56FFCP PHASE2:Mm9::chr7:31244771..31244782,+#_3404a78f3273636b8cfc82454777e178p2@Nphs1
9.89e-56FFCP PHASE2:Mm9::chr7:47891824..47891827,-#_3404a78f3273636b8cfc82454777e178p@chr7:47891824..47891827, -
9.89e-56FFCP PHASE2:Mm9::chr10:50622895..50622905,+#_3404a78f3273636b8cfc82454777e178p@chr10:50622895..50622905, +
9.89e-56FFCP PHASE1:Mm9::chr7:47891824..47891827,-#_3404a78f3273636b8cfc82454777e178p@chr7:47891824..47891827, -
9.89e-56FFCP PHASE1:Mm9::chr10:50622895..50622905,+#_3404a78f3273636b8cfc82454777e178p@chr10:50622895..50622905, +
9.89e-56FFCP PHASE2:Mm9::chr10:39251651..39251690,+#_3404a78f3273636b8cfc82454777e178p@chr10:39251651..39251690, +
9.89e-56FFCP PHASE1:Mm9::chr8:118959620..118959632,-#_3404a78f3273636b8cfc82454777e178p@chr8:118959620..118959632, -
9.89e-56FFCP PHASE1:Mm9::chr1:89952042..89952053,+#_3404a78f3273636b8cfc82454777e178p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
1.76e-55FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_0e98a7df5c2ff374246ff95bb16c88dfp@chr18:3456189..3456200, +
1.76e-55FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_0e98a7df5c2ff374246ff95bb16c88dfp@chr18:3456189..3456200, +
3.07e-55FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_5886faa4d81417f386cebdb2ffd424a3p@chr9:119741711..119741743, -
3.07e-55FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_5886faa4d81417f386cebdb2ffd424a3p@chr9:119741711..119741743, -
6.17e-52FFCP PHASE2:Mm9::chr11:75720190..75720216,-#_23747fe47d2bcb244da7a518a6e9f989p@chr11:75720190..75720216, -
6.17e-52FFCP PHASE1:Mm9::chr11:75720190..75720216,-#_23747fe47d2bcb244da7a518a6e9f989p@chr11:75720190..75720216, -
6.97e-52FFCP PHASE1:Mm9::chr13:108834249..108834299,+#_8c5b881a80b88fa73bab50027e7b7b2ap3@2810008M24Rik
6.97e-52FFCP PHASE2:Mm9::chr13:108834249..108834299,+#_8c5b881a80b88fa73bab50027e7b7b2ap3@2810008M24Rik
1.64e-51FFCP PHASE2:Mm9::chr2:74975548..74975563,-#_5b2748b19609c31bfa67fb9689abd2ffp1@ENSMUST00000143898
1.64e-51FFCP PHASE1:Mm9::chr2:74975548..74975563,-#_5b2748b19609c31bfa67fb9689abd2ffp1@ENSMUST00000143898
6.24e-51FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_aa8306664bc252908ecc84f8b3fd47a4p@chr7:7606139..7606151, -
6.24e-51FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_aa8306664bc252908ecc84f8b3fd47a4p@chr7:7606139..7606151, -
1.67e-50FFCP PHASE2:Mm9::chr3:96637141..96637180,+#_6ee22ed867664842cbb349fb36ce8802p4@Pdzk1
1.67e-50FFCP PHASE1:Mm9::chr3:96637141..96637180,+#_6ee22ed867664842cbb349fb36ce8802p4@Pdzk1
2.31e-50FFCP PHASE1:Mm9::chr13:98786159..98786170,-#_ea58d19e29ad31a8192e84eea2a8756ep8@Rgnef
2.31e-50FFCP PHASE2:Mm9::chr13:98786159..98786170,-#_ea58d19e29ad31a8192e84eea2a8756ep8@Rgnef
2.36e-50FFCP PHASE2:Mm9::chr16:88563303..88563315,-#_24ee8803274e0093ebdb066eaddfc47cp5@Cldn8
2.36e-50FFCP PHASE1:Mm9::chr16:88563303..88563315,-#_24ee8803274e0093ebdb066eaddfc47cp5@Cldn8
2.38e-50FFCP PHASE2:Mm9::chr7:31244710..31244719,+#_cc2cfa98dad0d300a47f0a98ca82eeedp4@Nphs1
2.38e-50FFCP PHASE1:Mm9::chr3:154257229..154257241,-#_cc2cfa98dad0d300a47f0a98ca82eeedp@chr3:154257229..154257241, -
2.38e-50FFCP PHASE2:Mm9::chr7:126785968..126785980,-#_cc2cfa98dad0d300a47f0a98ca82eeedp2@uc009jll.1
2.38e-50FFCP PHASE2:Mm9::chr3:154257229..154257241,-#_cc2cfa98dad0d300a47f0a98ca82eeedp@chr3:154257229..154257241, -
2.38e-50FFCP PHASE1:Mm9::chr7:31244710..31244719,+#_cc2cfa98dad0d300a47f0a98ca82eeedp4@Nphs1
2.38e-50FFCP PHASE1:Mm9::chr7:126785968..126785980,-#_cc2cfa98dad0d300a47f0a98ca82eeedp2@uc009jll.1
2.38e-50FFCP PHASE2:Mm9::chr10:12353875..12353921,-#_cc2cfa98dad0d300a47f0a98ca82eeedp@chr10:12353875..12353921, -
2.38e-50FFCP PHASE1:Mm9::chr10:12353875..12353921,-#_cc2cfa98dad0d300a47f0a98ca82eeedp@chr10:12353875..12353921, -
3.53e-50FFCP PHASE2:Mm9::chr10:3291584..3291599,+#_c5b9bcff3f822b0de006a4b232372c72p@chr10:3291584..3291599, +
3.53e-50FFCP PHASE1:Mm9::chr10:3291584..3291599,+#_c5b9bcff3f822b0de006a4b232372c72p@chr10:3291584..3291599, +
5.98e-50FFCP PHASE2:Mm9::chr17:34764056..34764069,-#_312535c85320f4e62a287013fa0314a8p9@Ppt2
5.98e-50FFCP PHASE1:Mm9::chr17:34764056..34764069,-#_312535c85320f4e62a287013fa0314a8p9@Ppt2
6.48e-50FFCP PHASE1:Mm9::chr4:107817557..107817589,-#_abdc2c1fa79291021f61bcc83482603fp5@Scp2
6.48e-50FFCP PHASE2:Mm9::chr4:107817557..107817589,-#_abdc2c1fa79291021f61bcc83482603fp5@Scp2
7.43e-50FFCP PHASE2:Mm9::chr2:74543235..74543246,+#_5f81860d8af0a9b7d7f0339d95be898cp7@Hoxd8
7.43e-50FFCP PHASE1:Mm9::chr2:74543235..74543246,+#_5f81860d8af0a9b7d7f0339d95be898cp7@Hoxd8
1.21e-49FFCP PHASE1:Mm9::chr6:83708841..83708859,+#_d64802432b9b45e31ac67962301aeecep@chr6:83708841..83708859, +
1.21e-49FFCP PHASE2:Mm9::chr7:86741766..86741778,-#_d64802432b9b45e31ac67962301aeecep@chr7:86741766..86741778, -
1.21e-49FFCP PHASE1:Mm9::chr2:124984656..124984673,+#_d64802432b9b45e31ac67962301aeecep@chr2:124984656..124984673, +
1.21e-49FFCP PHASE2:Mm9::chr10:127286959..127286970,+#_d64802432b9b45e31ac67962301aeecep3@Rdh19

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