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{{UBERON
{{UBERON
|id=UBERON:0005281
|alt_id=
|name=ventricular system of central nervous system
|anatomical_img_id=FMA:242675
|namespace=
|def="a set of structures containing cerebrospinal fluid in the brain. It is continuous with the central canal of the spinal cord." [Wikipedia:Ventricular_system]
|xref=EFO:0003650;;EHDAA2:0004362;;EV:0100306;;FMA:242675;;http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png;;TAO:0001261;;ZFA:0001261
|is_a=UBERON:0000467;;UBERON:0004121
|synonym="ventricular system" EXACT [ZFA:0001261];;"ventricular system of neuraxis" EXACT [FMA:242675]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="a set of structures containing cerebrospinal fluid in the brain. It is continuous with the central canal of the spinal cord." [Wikipedia:Ventricular_system]
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005281
|is_a=UBERON:0000467 ;;UBERON:0004121
|is_obsolete=
|located_in=
|located_in=
|name=ventricular system of central nervous system
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001017
|part_of=UBERON:0001017
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym="ventricular system" EXACT [ZFA:0001261];;"ventricular system of neuraxis" EXACT [FMA:242675]
|union_of=
|xref=EFO:0003650;;EHDAA2:0004362;;EV:0100306;;FMA:242675;;http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png;;TAO:0001261;;ZFA:0001261
}}
}}

Latest revision as of 17:52, 12 September 2014

Name:ventricular system of central nervous system
Namespace:FANTOM
Definition:"a set of structures containing cerebrospinal fluid in the brain. It is continuous with the central canal of the spinal cord." [Wikipedia:Ventricular_system]
Xrefs:
links:

EFO:0003650
EHDAA2:0004362
EV:0100306
FMA:242675
[ Gray734.png Gray734.png]
[ 200px-Gray734.png 200px-Gray734.png]
TAO:0001261

ZFA:0001261
Synonyms: "ventricular system" EXACT [ZFA:0001261]
"ventricular system of neuraxis" EXACT [FMA:242675]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000467(anatomical system),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0001017(central nervous system)



Children

part of:UBERON:0005282 (ventricular system of brain),UBERON:0013150 (future brain vesicle)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005281 (ventricular system of central nervous system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr1:201708485..201708494,+#_3741cb8aee2f3b69597dfda9491ee555p55@NAV1
3.29e-195FFCP PHASE1:Hg19::chr1:201708474..201708479,+#_3741cb8aee2f3b69597dfda9491ee555p58@NAV1
3.29e-195FFCP PHASE1:Hg19::chr1:201708485..201708494,+#_3741cb8aee2f3b69597dfda9491ee555p55@NAV1
3.29e-195FFCP PHASE2:Hg19::chr1:201708474..201708479,+#_3741cb8aee2f3b69597dfda9491ee555p58@NAV1
8.99e-131FFCP PHASE1:Hg19::chr8:24997361..24997368,-#_93b24e18d1e343beb7cc5bbb53b48fc5p@chr8:24997361..24997368, -
8.99e-131FFCP PHASE2:Hg19::chr8:24997361..24997368,-#_93b24e18d1e343beb7cc5bbb53b48fc5p@chr8:24997361..24997368, -
3.96e-66FFCP PHASE1:Hg19::chr17:75471711..75471726,+#_b48fd2ca66e6eeb8175c562753cc824bp73@SEPT9
3.96e-66FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_b48fd2ca66e6eeb8175c562753cc824bp@chr3:146517344..146517356, +
3.96e-66FFCP PHASE2:Hg19::chr17:75471711..75471726,+#_b48fd2ca66e6eeb8175c562753cc824bp73@SEPT9
3.96e-66FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_b48fd2ca66e6eeb8175c562753cc824bp@chr3:146517344..146517356, +
4.77e-57FFCP PHASE1:Hg19::chr12:15941738..15941768,+#_761f28eebca0e3a42f39ce4365c80c5dp@chr12:15941738..15941768, +
4.77e-57FFCP PHASE2:Hg19::chr12:15941738..15941768,+#_761f28eebca0e3a42f39ce4365c80c5dp@chr12:15941738..15941768, +
6.36e-57FFCP PHASE1:Hg19::chr5:149537789..149537803,-#_071012f63db5077158ee580037c09b43p@chr5:149537789..149537803, -
6.36e-57FFCP PHASE2:Hg19::chr5:149537789..149537803,-#_071012f63db5077158ee580037c09b43p@chr5:149537789..149537803, -
8.82e-51FFCP PHASE2:Hg19::chr14:76072096..76072107,+#_663482a148772dd91003d7ef48796a87p7@FLVCR2
8.82e-51FFCP PHASE1:Hg19::chr14:76072096..76072107,+#_663482a148772dd91003d7ef48796a87p7@FLVCR2
8.82e-51FFCP PHASE1:Hg19::chr10:105677427..105677438,-#_663482a148772dd91003d7ef48796a87p7@OBFC1
8.82e-51FFCP PHASE2:Hg19::chr10:105677427..105677438,-#_663482a148772dd91003d7ef48796a87p7@OBFC1
5.15e-50FFCP PHASE2:Hg19::chr16:65159735..65159744,-#_8e625d227aa525ef4a846aadaff9fbcbp@chr16:65159735..65159744, -
5.15e-50FFCP PHASE1:Hg19::chr16:65159735..65159744,-#_8e625d227aa525ef4a846aadaff9fbcbp@chr16:65159735..65159744, -
1.22e-44FFCP PHASE1:Hg19::chr5:158523468..158523481,-#_eaebbed70e7658f58847860f467e1e2ap20@EBF1
1.22e-44FFCP PHASE2:Hg19::chr5:158523468..158523481,-#_eaebbed70e7658f58847860f467e1e2ap20@EBF1
1.53e-44FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_29c2016a82f8557226818f50360e846fp@chr11:60680190..60680212, +
1.53e-44FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_29c2016a82f8557226818f50360e846fp@chr11:60680190..60680212, +
5.99e-41FFCP PHASE1:Hg19::chr9:132390755..132390781,+#_aafc4678a1d288ddbad5e23e064ca2e3p7@METTL11A
5.99e-41FFCP PHASE2:Hg19::chr9:132390755..132390781,+#_aafc4678a1d288ddbad5e23e064ca2e3p7@METTL11A
8.98e-41FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_b0301d1a254ca2994aa5ab61e8e018b8p@chr1:19778678..19778689, -
8.98e-41FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_b0301d1a254ca2994aa5ab61e8e018b8p@chr1:19778678..19778689, -
1.34e-40FFCP PHASE1:Hg19::chr4:111397216..111397250,+#_d8cdbaf6456fc2287cfb01d0962b7e75p8@ENPEP
1.34e-40FFCP PHASE2:Hg19::chr4:111397216..111397250,+#_d8cdbaf6456fc2287cfb01d0962b7e75p8@ENPEP
9.84e-37FFCP PHASE1:Hg19::chr11:44331735..44331747,-#_0cfffbd741f0121617d6a9f92cb554ccp3@ALX4
9.84e-37FFCP PHASE2:Hg19::chr11:44331735..44331747,-#_0cfffbd741f0121617d6a9f92cb554ccp3@ALX4
1.18e-36FFCP PHASE2:Hg19::chr1:236203048..236203055,-#_57d1e74025e8095242a90e3473de9052p@chr1:236203048..236203055, -
1.18e-36FFCP PHASE1:Hg19::chr1:236203048..236203055,-#_57d1e74025e8095242a90e3473de9052p@chr1:236203048..236203055, -
1.42e-36FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_69bb1a7afaa3f33cc8fc609be64c8034p20@RIMS1
1.42e-36FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_69bb1a7afaa3f33cc8fc609be64c8034p20@RIMS1
1.7e-36FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_fabfec2b9c4b33367acade50b95629c7p@chr14:87636652..87636657, -
1.7e-36FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_fabfec2b9c4b33367acade50b95629c7p@chr14:87636652..87636657, -
2.04e-36FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_64f0f95c3e2592166233cc62b506bc46p30@PRKCH
2.04e-36FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_64f0f95c3e2592166233cc62b506bc46p30@PRKCH
1.11e-34FFCP PHASE2:Hg19::chr12:108732917..108732935,-#_f2add0d5381592a5f6fc29e446f0bfb2p5@CMKLR1
1.11e-34FFCP PHASE1:Hg19::chr12:108732917..108732935,-#_f2add0d5381592a5f6fc29e446f0bfb2p5@CMKLR1
5.04e-34FFCP PHASE1:Hg19::chr9:130830760..130830783,+#_e7f5b1efc657a79a1aa51b2bcca21568p11@SLC25A25
5.04e-34FFCP PHASE2:Hg19::chr9:130830760..130830783,+#_e7f5b1efc657a79a1aa51b2bcca21568p11@SLC25A25
7.05e-34FFCP PHASE2:Hg19::chr15:95869480..95869493,+#_8ddb6ce5ca52a42331ff6bb35558db67p@chr15:95869480..95869493, +
7.05e-34FFCP PHASE1:Hg19::chr15:95869480..95869493,+#_8ddb6ce5ca52a42331ff6bb35558db67p@chr15:95869480..95869493, +
7.05e-34FFCP PHASE1:Hg19::chr2:231988425..231988433,-#_8ddb6ce5ca52a42331ff6bb35558db67p11@HTR2B
7.05e-34FFCP PHASE1:Hg19::chr8:128902610..128902630,+#_8ddb6ce5ca52a42331ff6bb35558db67p17@PVT1
7.05e-34FFCP PHASE1:Hg19::chr6:36906253..36906260,-#_8ddb6ce5ca52a42331ff6bb35558db67p@chr6:36906253..36906260, -
7.05e-34FFCP PHASE2:Hg19::chr6:36906253..36906260,-#_8ddb6ce5ca52a42331ff6bb35558db67p@chr6:36906253..36906260, -
7.05e-34FFCP PHASE2:Hg19::chr2:231988425..231988433,-#_8ddb6ce5ca52a42331ff6bb35558db67p11@HTR2B
7.05e-34FFCP PHASE2:Hg19::chr8:128902610..128902630,+#_8ddb6ce5ca52a42331ff6bb35558db67p17@PVT1
1.37e-31FFCP PHASE1:Hg19::chr2:223536233..223536234,+#_8a42b8b7ac1a3c0548343dca3b8ad372p3@MOGAT1
1.37e-31FFCP PHASE2:Hg19::chr2:223536233..223536234,+#_8a42b8b7ac1a3c0548343dca3b8ad372p3@MOGAT1
4.71e-31FFCP PHASE1:Hg19::chr5:134260455..134260471,-#_f6c6ce062d06c5e1a37cc1c0ab89dbd6p@chr5:134260455..134260471, -
4.71e-31FFCP PHASE2:Hg19::chr5:134260455..134260471,-#_f6c6ce062d06c5e1a37cc1c0ab89dbd6p@chr5:134260455..134260471, -
4.71e-31FFCP PHASE1:Hg19::chr3:147127961..147127972,+#_f6c6ce062d06c5e1a37cc1c0ab89dbd6p3@AB464362
4.71e-31FFCP PHASE2:Hg19::chr3:147127961..147127972,+#_f6c6ce062d06c5e1a37cc1c0ab89dbd6p3@AB464362
6.96e-30FFCP PHASE2:Hg19::chr16:65159902..65159909,-#_0be7bad9a53beccc9bb841fb0043667fp@chr16:65159902..65159909, -
6.96e-30FFCP PHASE1:Hg19::chr16:65159902..65159909,-#_0be7bad9a53beccc9bb841fb0043667fp@chr16:65159902..65159909, -
1.08e-29FFCP PHASE1:Hg19::chr5:149537807..149537827,-#_483116e6f39bcf5b28a8a513790921b3p@chr5:149537807..149537827, -
1.08e-29FFCP PHASE2:Hg19::chr5:149537807..149537827,-#_483116e6f39bcf5b28a8a513790921b3p@chr5:149537807..149537827, -
9.09e-27FFCP PHASE1:Hg19::chr3:147124547..147124563,-#_b124b6599e6a9fc6434d8f39117d9f6ap6@ZIC4
9.09e-27FFCP PHASE2:Hg19::chr3:147124547..147124563,-#_b124b6599e6a9fc6434d8f39117d9f6ap6@ZIC4
1.67e-26FFCP PHASE1:Hg19::chr2:238066183..238066194,-#_c52c5b0cbb9f9db9a151c8d74a898e73p@chr2:238066183..238066194, -
1.67e-26FFCP PHASE2:Hg19::chr2:238066183..238066194,-#_c52c5b0cbb9f9db9a151c8d74a898e73p@chr2:238066183..238066194, -
4.08e-26FFCP PHASE1:Hg19::chr5:40910094..40910097,+#_fa0e3e87cb63b32e09a4706bba91703ap@chr5:40910094..40910097, +
4.08e-26FFCP PHASE2:Hg19::chr5:40910094..40910097,+#_fa0e3e87cb63b32e09a4706bba91703ap@chr5:40910094..40910097, +
5.56e-26FFCP PHASE1:Hg19::chr11:61634768..61634777,+#_49e2b8788d6d6dbe3f264704de8cab27p@chr11:61634768..61634777, +
5.56e-26FFCP PHASE2:Hg19::chr11:61634768..61634777,+#_49e2b8788d6d6dbe3f264704de8cab27p@chr11:61634768..61634777, +
7.14e-26FFCP PHASE1:Hg19::chr8:58658778..58658788,+#_3d345c373eee9711e4f31e47881677bcp2@ENST00000518934, p2@uc003xti.1
7.14e-26FFCP PHASE2:Hg19::chr8:58658778..58658788,+#_3d345c373eee9711e4f31e47881677bcp2@ENST00000518934, p2@uc003xti.1
9.18e-26FFCP PHASE1:Hg19::chr6:129504885..129504896,-#_ebcba8c3438d6828f27abf8fc1fcefccp@chr6:129504885..129504896, -
9.18e-26FFCP PHASE2:Hg19::chr6:129504885..129504896,-#_ebcba8c3438d6828f27abf8fc1fcefccp@chr6:129504885..129504896, -
1.44e-25FFCP PHASE2:Hg19::chr12:279773..279812,+#_11aec04f87425957a88a744f0c6b24b8p@chr12:279773..279812, +
1.44e-25FFCP PHASE1:Hg19::chr12:279773..279812,+#_11aec04f87425957a88a744f0c6b24b8p@chr12:279773..279812, +
1.44e-25FFCP PHASE1:Hg19::chr3:147127358..147127369,+#_11aec04f87425957a88a744f0c6b24b8p16@ZIC1
1.44e-25FFCP PHASE2:Hg19::chr3:147127358..147127369,+#_11aec04f87425957a88a744f0c6b24b8p16@ZIC1
2.37e-25FFCP PHASE2:Hg19::chr3:147112699..147112713,-#_a934675208ab70ad73a579e955377373p@chr3:147112699..147112713, -
2.37e-25FFCP PHASE1:Hg19::chr3:147112699..147112713,-#_a934675208ab70ad73a579e955377373p@chr3:147112699..147112713, -
1.15e-24FFCP PHASE1:Hg19::chr1:47903765..47903783,+#_db7978b4ca6d5985be63c0abdfc52459p5@FOXD2
1.15e-24FFCP PHASE2:Hg19::chr1:47903765..47903783,+#_db7978b4ca6d5985be63c0abdfc52459p5@FOXD2
1.45e-24FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_4728fbf1cb0ff564aa21b08ab6584f46p@chr9:16138889..16138902, -
1.45e-24FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_4728fbf1cb0ff564aa21b08ab6584f46p@chr9:16138889..16138902, -
2.97e-24FFCP PHASE1:Hg19::chr2:192128035..192128057,+#_b5a650a0cd218f102ef2a30765fab4b7p6@MYO1B
2.97e-24FFCP PHASE2:Hg19::chr2:192128035..192128057,+#_b5a650a0cd218f102ef2a30765fab4b7p6@MYO1B
3.34e-24FFCP PHASE2:Hg19::chr3:147088197..147088208,-#_33eb300dc80457677f46ad35843b178bp@chr3:147088197..147088208, -
3.34e-24FFCP PHASE1:Hg19::chr3:147088197..147088208,-#_33eb300dc80457677f46ad35843b178bp@chr3:147088197..147088208, -
5.35e-24FFCP PHASE1:Hg19::chr17:1013251..1013277,-#_1ae99e2927b544d0752e227dff9385a7p@chr17:1013251..1013277, -
5.35e-24FFCP PHASE2:Hg19::chr17:1013251..1013277,-#_1ae99e2927b544d0752e227dff9385a7p@chr17:1013251..1013277, -
1.01e-23FFCP PHASE2:Hg19::chr11:60640905..60640919,+#_76ef44802de1d249d62edd5d46d4cdc2p@chr11:60640905..60640919, +
1.01e-23FFCP PHASE1:Hg19::chr11:60640905..60640919,+#_76ef44802de1d249d62edd5d46d4cdc2p@chr11:60640905..60640919, +
1.42e-23FFCP PHASE2:Hg19::chr17:75446774..75446783,+#_519143a6905cde5a7a7af5f3f631a50ap49@SEPT9
1.42e-23FFCP PHASE1:Hg19::chr17:75446774..75446783,+#_519143a6905cde5a7a7af5f3f631a50ap49@SEPT9
3.49e-23FFCP PHASE1:Hg19::chr11:8832119..8832124,-#_405eeeffaf131cc77dbfe503cf59f2f2p30@ST5
3.49e-23FFCP PHASE2:Hg19::chr11:8832119..8832124,-#_405eeeffaf131cc77dbfe503cf59f2f2p30@ST5
6.84e-23FFCP PHASE1:Hg19::chr6:55739244..55739256,-#_8a15131ecdcbaa77eec684e833253bf8p2@AB527577, p2@CU693346
6.84e-23FFCP PHASE2:Hg19::chr6:55739244..55739256,-#_8a15131ecdcbaa77eec684e833253bf8p2@AB527577, p2@CU693346
2.06e-22FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_afd875dc653f3aa1d2ea62f659caeec5p6@CCDC86
2.06e-22FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_afd875dc653f3aa1d2ea62f659caeec5p6@CCDC86

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