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{{UBERON
{{UBERON
|id=UBERON:0005856
|alt_id=
|name=mesenchymal condensation
|namespace=
|def=
|xref=EHDAA:8979;;EHDAA2:0003148;;EMAPA:25351
|is_a=UBERON:0003104
|synonym="mesenchyme condensation" EXACT [EMAPA:25351]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005856
|is_a=UBERON:0007524 ;;UBERON:0011585
|is_obsolete=
|located_in=
|located_in=
|name=developing mesenchymal condensation
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="mesenchyme condensation" EXACT [EMAPA:25351]
|union_of=
|xref=EHDAA2:0003148;;EHDAA:8979;;EMAPA:25351
}}
}}

Latest revision as of 17:55, 12 September 2014

Name:developing mesenchymal condensation
Namespace:FANTOM
Xrefs:
links:

EHDAA2:0003148
EHDAA:8979

EMAPA:25351
Synonyms: "mesenchyme condensation" EXACT [EMAPA:25351]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0007524(dense mesenchyme tissue),UBERON:0011585(cell condensation)



Children

is a:UBERON:0003089 (sclerotome),UBERON:0005863 (cartilaginous condensation),UBERON:0005865 (pre-muscle condensation),UBERON:0005866 (pre-cartilage condensation)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005856 (developing mesenchymal condensation), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.25e-162FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_948fcb2896da58ebfdc7315f63869dcdp@chr3:174737010..174737023, +
1.25e-162FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_948fcb2896da58ebfdc7315f63869dcdp@chr3:174737010..174737023, +
3.92e-140FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_7be8c8e18fd49091650d79bd8059dba5p4@PAX1
3.92e-140FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_7be8c8e18fd49091650d79bd8059dba5p4@PAX1
4.22e-99FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_5c1b5dff3ad97078b72dbc093caa06c5p@chr5:30104176..30104187, -
4.22e-99FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_5c1b5dff3ad97078b72dbc093caa06c5p@chr5:30104176..30104187, -
1.06e-78FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_9877c12309292ca5b4c825e26b2ca00dp4@NKX3-2
1.06e-78FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_9877c12309292ca5b4c825e26b2ca00dp4@NKX3-2
2.52e-71FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_67a24eaac2e69e001d91d57829a21380p@chr9:114135497..114135526, -
2.52e-71FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_67a24eaac2e69e001d91d57829a21380p@chr9:114135497..114135526, -
7.4e-71FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_bf53a569bb1337ff0794337796d70385p@chr2:241897125..241897142, -
7.4e-71FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_bf53a569bb1337ff0794337796d70385p@chr2:241897125..241897142, -
6.33e-70FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_952f469a1bb7600f9b326ef3e2372a49p@chr3:80727046..80727051, -
6.33e-70FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_952f469a1bb7600f9b326ef3e2372a49p@chr3:80727046..80727051, -
4.8e-67FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_da3039c18fd6b459ca3b692cc9f8b8b4p15@SNED1
4.8e-67FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_da3039c18fd6b459ca3b692cc9f8b8b4p15@SNED1
1.24e-66FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_b6ea6e2cffb8e9504f09b983b967a0fcp20@CAPZB
1.24e-66FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_b6ea6e2cffb8e9504f09b983b967a0fcp20@CAPZB
1.26e-62FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_284e4144b7f83b9ce71799a5580899d1p@chr1:19778678..19778689, -
1.26e-62FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_284e4144b7f83b9ce71799a5580899d1p@chr1:19778678..19778689, -
1.1e-59FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_e9940acd2140d27a82773c423d7fe2dap@chr2:241897189..241897221, -
1.1e-59FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_e9940acd2140d27a82773c423d7fe2dap@chr2:241897189..241897221, -
1.55e-57FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_fb0d5be1f5c8240e4190636464f4c34ap1@uc010aki.1
1.55e-57FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_fb0d5be1f5c8240e4190636464f4c34ap1@uc010aki.1
4.09e-56FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_3ec0ead2b661a701eadecfc88a511ff5p6@SIX4
4.09e-56FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_3ec0ead2b661a701eadecfc88a511ff5p6@SIX4
3.74e-53FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_70d89066ed709908c4bf80d372ca3e78p3@uc010aki.1
3.74e-53FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_70d89066ed709908c4bf80d372ca3e78p3@uc010aki.1
1.15e-51FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_bce38c4faabebc5a3a938b80b6401b5dp3@PAX1
1.15e-51FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_bce38c4faabebc5a3a938b80b6401b5dp3@PAX1
2.3e-51FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_60ea9e26de4a89d916de05d05a3124bep@chr10:81923378..81923389, -
2.3e-51FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_60ea9e26de4a89d916de05d05a3124bep@chr10:81923378..81923389, -
3.24e-51FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_27b4ebdf6e014b720c526b1e0a982906p@chr2:12248310..12248334, -
3.24e-51FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_27b4ebdf6e014b720c526b1e0a982906p@chr2:12248310..12248334, -
8.0e-51FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_8ef7ceb552fe0a7a10f334cfb4532cb9p19@HDAC9
8.0e-51FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_8ef7ceb552fe0a7a10f334cfb4532cb9p19@HDAC9
5.06e-49FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_5c5e25bed8ea0e9c88806538d2379b8fp@chr7:158224707..158224729, -
5.06e-49FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_5c5e25bed8ea0e9c88806538d2379b8fp@chr7:158224707..158224729, -
5.24e-48FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_dfd8ec07f882bf7bff6525eb330cb497p@chr1:65888177..65888194, +
5.24e-48FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_dfd8ec07f882bf7bff6525eb330cb497p@chr1:65888177..65888194, +
2.98e-45FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_f2026df27c73ea447b3a584224aa6feep3@NKX3-2
2.98e-45FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_f2026df27c73ea447b3a584224aa6feep3@NKX3-2
2.92e-44FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_04dcc9d69eb88763eaea1c4c102f01f1p1@MGC27382
2.92e-44FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_04dcc9d69eb88763eaea1c4c102f01f1p1@MGC27382
5.38e-44FFCP PHASE2:Mm9::chr1:24217213..24217226,+#_9d1a1d1793cc8839c4e493df2a884672p@chr1:24217213..24217226, +
5.38e-44FFCP PHASE1:Mm9::chr1:24217213..24217226,+#_9d1a1d1793cc8839c4e493df2a884672p@chr1:24217213..24217226, +
1.71e-43FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_b110dcec918d312c740da8491ef036a4p18@HDAC9
1.71e-43FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_b110dcec918d312c740da8491ef036a4p18@HDAC9
1.48e-40FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_421548137cf90338765b9b86041fdee3p@chr9:33028063..33028067, -
1.48e-40FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_421548137cf90338765b9b86041fdee3p@chr9:33028063..33028067, -
1.48e-40FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_421548137cf90338765b9b86041fdee3p@chr13:24914614..24914622, -
1.48e-40FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_421548137cf90338765b9b86041fdee3p@chr13:24914614..24914622, -
1.64e-40FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_4c1ab63eb4ac7d66131d5a60477a15c0p1@PAX1
1.64e-40FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_4c1ab63eb4ac7d66131d5a60477a15c0p1@PAX1
1.81e-40FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_1c876355a5851bbf7d1137c9adfe91d4p5@PTGFR
1.81e-40FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_1c876355a5851bbf7d1137c9adfe91d4p5@PTGFR
2.13e-40FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_a541954375808fdf614c04919a31dc71p@chr2:241897363..241897398, +
2.13e-40FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_a541954375808fdf614c04919a31dc71p@chr2:241897363..241897398, +
3.04e-39FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_23bd309089495fa1a14bb34e96cbb79ep2@PAX1
3.04e-39FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_23bd309089495fa1a14bb34e96cbb79ep2@PAX1
7.19e-39FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_4fd63b293a25d8547de63f3af0684ef3p16@HDAC9
7.19e-39FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_4fd63b293a25d8547de63f3af0684ef3p@chr5:140887761..140887777, +
7.19e-39FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_4fd63b293a25d8547de63f3af0684ef3p16@HDAC9
7.19e-39FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_4fd63b293a25d8547de63f3af0684ef3p@chr5:140887761..140887777, +
1.24e-38FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_9986a102e79ae8bb6d14a3501816842ep4@NUP54
1.24e-38FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_9986a102e79ae8bb6d14a3501816842ep4@NUP54
2.08e-38FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_25dea8e05c280853e4e34e6336182cecp@chr2:241938405..241938416, +
2.08e-38FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_25dea8e05c280853e4e34e6336182cecp@chr2:241938405..241938416, +
3.34e-38FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_8db5cb035936a694e17707b6cd548995p1@NKX3-2
3.34e-38FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_8db5cb035936a694e17707b6cd548995p1@NKX3-2
3.68e-38FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_31e6c2d13df6811dbc276baa521f17cfp10@SYNJ2
3.68e-38FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_31e6c2d13df6811dbc276baa521f17cfp10@SYNJ2
5.39e-38FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_b1863d0be155328ad2658d5f379f8221p@chr9:16138889..16138902, -
5.39e-38FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_b1863d0be155328ad2658d5f379f8221p@chr9:16138889..16138902, -
8.66e-38FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_7c317828a78fdfc97819a8b0ba154a10p2@ENST00000518706
8.66e-38FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_7c317828a78fdfc97819a8b0ba154a10p2@ENST00000518706
2.96e-37FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_1e52b9324b5787a427479e3af21e42b2p1@ENST00000436845
2.96e-37FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_1e52b9324b5787a427479e3af21e42b2p1@ENST00000436845
6.92e-37FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_5ba01fa3ba9d776a20330b9c159f584dp12@CDK5RAP2
6.92e-37FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_5ba01fa3ba9d776a20330b9c159f584dp12@CDK5RAP2
3.28e-36FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_66e3838586a5a485ea8c0b30cf162e39p1@ENST00000413519
3.28e-36FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_66e3838586a5a485ea8c0b30cf162e39p1@ENST00000413519
9.62e-35FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_625081cd2a0d7c3e95c08f311e30754ep4@PAX9
9.62e-35FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_625081cd2a0d7c3e95c08f311e30754ep4@PAX9
1.8e-34FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_7ea75c91064a30afb2e493da4f1ffdf6p@chr7:100202784..100202796, -
1.8e-34FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_7ea75c91064a30afb2e493da4f1ffdf6p@chr7:100202784..100202796, -
3.69e-34FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_609033c0781d0c28f6a25ec24a1a460fp8@HOXC6
3.69e-34FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_609033c0781d0c28f6a25ec24a1a460fp8@HOXC6
5.52e-34FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_093d5c8b2ca8f5b1229b7d41fd8e1cbep6@CCDC86
5.52e-34FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_093d5c8b2ca8f5b1229b7d41fd8e1cbep6@CCDC86
1.43e-33FFCP PHASE1:Hg19::chr20:21695435..21695452,+#_a8f8e1c4227549134099443c269b8d46p@chr20:21695435..21695452, +
1.43e-33FFCP PHASE2:Hg19::chr20:21695435..21695452,+#_a8f8e1c4227549134099443c269b8d46p@chr20:21695435..21695452, +
2.03e-33FFCP PHASE2:Mm9::chr15:78817557..78817567,+#_9b51813da4529b4e3dca7527a10dde9ap@chr15:78817557..78817567, +
2.03e-33FFCP PHASE1:Mm9::chr15:78817557..78817567,+#_9b51813da4529b4e3dca7527a10dde9ap@chr15:78817557..78817567, +
3.37e-33FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_0a4ffaaa38fecfa5bc7b125dfc7b7fa4p26@Myo18a
3.37e-33FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_0a4ffaaa38fecfa5bc7b125dfc7b7fa4p26@Myo18a
4.33e-33FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_c368a1ceaaa56673b74ff73ba4524cd7p@chr8:75097542..75097549, +
4.33e-33FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_c368a1ceaaa56673b74ff73ba4524cd7p@chr9:21934585..21934591, -
4.33e-33FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_c368a1ceaaa56673b74ff73ba4524cd7p@chr8:75097542..75097549, +
4.33e-33FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_c368a1ceaaa56673b74ff73ba4524cd7p@chr2:32482372..32482381, +

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