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{{UBERON
{{UBERON
|id=UBERON:0007195
|alt_id=
|name=stroma of bone marrow
|namespace=
|def="The stroma of the bone marrow is all tissue not directly involved in the primary function of hematopoiesis. The yellow bone marrow belongs here, and makes the majority of the bone marrow stroma, in addition to stromal cells located in the red bone marrow. Yellow bone marrow is found in the Medullary cavity. Still, the stroma is indirectly involved in hematopoiesis, since it provides the hematopoietic microenvironment that facilitates hematopoiesis by the parenchymal cells. For instance, they generate colony stimulating factors, affecting hematopoiesis." [Wikipedia:Bone_marrow#Stroma]
|xref=FMA:21426
|is_a=UBERON:0002384;;UBERON:0004120
|synonym="bone marrow stroma" EXACT [FMA:21426]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The stroma of the bone marrow is all tissue not directly involved in the primary function of hematopoiesis. The yellow bone marrow belongs here, and makes the majority of the bone marrow stroma, in addition to stromal cells located in the red bone marrow. Yellow bone marrow is found in the Medullary cavity. Still, the stroma is indirectly involved in hematopoiesis, since it provides the hematopoietic microenvironment that facilitates hematopoiesis by the parenchymal cells. For instance, they generate colony stimulating factors, affecting hematopoiesis." [Wikipedia:Bone_marrow#Stroma]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007195
|is_a=UBERON:0002384 ;;UBERON:0004120
|is_obsolete=
|located_in=
|located_in=
|name=stroma of bone marrow
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002371
|part_of=UBERON:0002371
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="bone marrow stroma" EXACT [FMA:21426]
|union_of=
|xref=FMA:21426
}}
}}

Latest revision as of 18:00, 12 September 2014

Name:stroma of bone marrow
Namespace:FANTOM
Definition:"The stroma of the bone marrow is all tissue not directly involved in the primary function of hematopoiesis. The yellow bone marrow belongs here, and makes the majority of the bone marrow stroma, in addition to stromal cells located in the red bone marrow. Yellow bone marrow is found in the Medullary cavity. Still, the stroma is indirectly involved in hematopoiesis, since it provides the hematopoietic microenvironment that facilitates hematopoiesis by the parenchymal cells. For instance, they generate colony stimulating factors, affecting hematopoiesis." [Wikipedia:Bone_marrow#Stroma]
Xrefs:
links:
FMA:21426
Synonyms: "bone marrow stroma" EXACT [FMA:21426]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002384(connective tissue),UBERON:0004120(mesoderm-derived structure)
part_of:UBERON:0002371(bone marrow)



Children

derives from:FF:0103296 (bone marrow stromal cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10686-109F2 (bone marrow stromal cell line:StromaNKtert)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007195 (stroma of bone marrow), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr10:132684824..132684837,+#_7f4f8f938ed2a58f1051e6c27e5a9fe2p@chr10:132684824..132684837, +
5.42e-195FFCP PHASE1:Hg19::chr10:132684824..132684837,+#_7f4f8f938ed2a58f1051e6c27e5a9fe2p@chr10:132684824..132684837, +
9.37e-99FFCP PHASE1:Hg19::chr7:20784945..20784950,+#_13b0479e9912ba70d329ab2e62af57a1p@chr7:20784945..20784950, +
9.37e-99FFCP PHASE2:Hg19::chr7:20784945..20784950,+#_13b0479e9912ba70d329ab2e62af57a1p@chr7:20784945..20784950, +
2.55e-98FFCP PHASE1:Hg19::chr12:12492047..12492055,-#_68052170b935764f189515046601e04dp19@MANSC1
2.55e-98FFCP PHASE2:Hg19::chr7:114026271..114026287,-#_68052170b935764f189515046601e04dp@chr7:114026271..114026287, -
2.55e-98FFCP PHASE2:Hg19::chr8:136769096..136769108,-#_68052170b935764f189515046601e04dp@chr8:136769096..136769108, -
2.55e-98FFCP PHASE2:Hg19::chr17:38152590..38152594,+#_68052170b935764f189515046601e04dp@chr17:38152590..38152594, +
2.55e-98FFCP PHASE1:Hg19::chr15:33390492..33390496,-#_68052170b935764f189515046601e04dp@chr15:33390492..33390496, -
2.55e-98FFCP PHASE1:Hg19::chr1:233860255..233860261,+#_68052170b935764f189515046601e04dp2@BC032032
2.55e-98FFCP PHASE2:Hg19::chr15:33390492..33390496,-#_68052170b935764f189515046601e04dp@chr15:33390492..33390496, -
2.55e-98FFCP PHASE1:Hg19::chr13:93057514..93057522,-#_68052170b935764f189515046601e04dp@chr13:93057514..93057522, -
2.55e-98FFCP PHASE1:Hg19::chr4:86748774..86748823,+#_68052170b935764f189515046601e04dp33@ARHGAP24
2.55e-98FFCP PHASE2:Hg19::chr13:93057514..93057522,-#_68052170b935764f189515046601e04dp@chr13:93057514..93057522, -
2.55e-98FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_68052170b935764f189515046601e04dp@chr1:62928606..62928608, +
2.55e-98FFCP PHASE2:Hg19::chr1:233860255..233860261,+#_68052170b935764f189515046601e04dp2@BC032032
2.55e-98FFCP PHASE1:Hg19::chr6:132527234..132527248,+#_68052170b935764f189515046601e04dp@chr6:132527234..132527248, +
2.55e-98FFCP PHASE1:Hg19::chr17:38152590..38152594,+#_68052170b935764f189515046601e04dp@chr17:38152590..38152594, +
2.55e-98FFCP PHASE1:Hg19::chr13:31611296..31611303,-#_68052170b935764f189515046601e04dp@chr13:31611296..31611303, -
2.55e-98FFCP PHASE2:Hg19::chr11:503521..503525,-#_68052170b935764f189515046601e04dp26@RNH1
2.55e-98FFCP PHASE2:Hg19::chr16:85190888..85190894,-#_68052170b935764f189515046601e04dp@chr16:85190888..85190894, -
2.55e-98FFCP PHASE1:Hg19::chr2:933319..933328,-#_68052170b935764f189515046601e04dp@chr2:933319..933328, -
2.55e-98FFCP PHASE1:Hg19::chr11:503521..503525,-#_68052170b935764f189515046601e04dp26@RNH1
2.55e-98FFCP PHASE2:Hg19::chr4:86748774..86748823,+#_68052170b935764f189515046601e04dp33@ARHGAP24
2.55e-98FFCP PHASE2:Hg19::chr13:31611296..31611303,-#_68052170b935764f189515046601e04dp@chr13:31611296..31611303, -
2.55e-98FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_68052170b935764f189515046601e04dp@chr1:62928606..62928608, +
2.55e-98FFCP PHASE2:Hg19::chr6:132527234..132527248,+#_68052170b935764f189515046601e04dp@chr6:132527234..132527248, +
2.55e-98FFCP PHASE1:Hg19::chr7:79818490..79818497,+#_68052170b935764f189515046601e04dp@chr7:79818490..79818497, +
2.55e-98FFCP PHASE2:Hg19::chr11:86106370..86106377,+#_68052170b935764f189515046601e04dp14@CCDC81
2.55e-98FFCP PHASE1:Hg19::chr11:86106370..86106377,+#_68052170b935764f189515046601e04dp14@CCDC81
2.55e-98FFCP PHASE1:Hg19::chr13:23479449..23479452,+#_68052170b935764f189515046601e04dp@chr13:23479449..23479452, +
2.55e-98FFCP PHASE1:Hg19::chr8:48859742..48859752,-#_68052170b935764f189515046601e04dp@chr8:48859742..48859752, -
2.55e-98FFCP PHASE2:Hg19::chr12:12492047..12492055,-#_68052170b935764f189515046601e04dp19@MANSC1
2.55e-98FFCP PHASE2:Hg19::chr2:933319..933328,-#_68052170b935764f189515046601e04dp@chr2:933319..933328, -
2.55e-98FFCP PHASE2:Hg19::chr13:23479449..23479452,+#_68052170b935764f189515046601e04dp@chr13:23479449..23479452, +
2.55e-98FFCP PHASE1:Hg19::chr7:114026271..114026287,-#_68052170b935764f189515046601e04dp@chr7:114026271..114026287, -
2.55e-98FFCP PHASE2:Hg19::chr7:79818490..79818497,+#_68052170b935764f189515046601e04dp@chr7:79818490..79818497, +
2.55e-98FFCP PHASE1:Hg19::chr16:85190888..85190894,-#_68052170b935764f189515046601e04dp@chr16:85190888..85190894, -
2.55e-98FFCP PHASE1:Hg19::chr8:136769096..136769108,-#_68052170b935764f189515046601e04dp@chr8:136769096..136769108, -
2.55e-98FFCP PHASE2:Hg19::chr8:48859742..48859752,-#_68052170b935764f189515046601e04dp@chr8:48859742..48859752, -
1.23e-66FFCP PHASE1:Hg19::chr7:68782112..68782118,+#_54eae31a73f17e11c5be4595e94b2511p@chr7:68782112..68782118, +
1.23e-66FFCP PHASE1:Hg19::chr2:221311010..221311014,+#_54eae31a73f17e11c5be4595e94b2511p@chr2:221311010..221311014, +
1.23e-66FFCP PHASE2:Hg19::chr7:68782112..68782118,+#_54eae31a73f17e11c5be4595e94b2511p@chr7:68782112..68782118, +
1.23e-66FFCP PHASE1:Hg19::chr4:180555424..180555428,+#_54eae31a73f17e11c5be4595e94b2511p@chr4:180555424..180555428, +
1.23e-66FFCP PHASE2:Hg19::chr2:221311010..221311014,+#_54eae31a73f17e11c5be4595e94b2511p@chr2:221311010..221311014, +
1.23e-66FFCP PHASE2:Hg19::chr4:180555424..180555428,+#_54eae31a73f17e11c5be4595e94b2511p@chr4:180555424..180555428, +
2.39e-66FFCP PHASE1:Hg19::chr1:120285422..120285431,+#_f50a2d04a6694cef65bf1a842eb5b165p10@PHGDH
2.39e-66FFCP PHASE1:Hg19::chr13:23474099..23474105,-#_f50a2d04a6694cef65bf1a842eb5b165p@chr13:23474099..23474105, -
2.39e-66FFCP PHASE2:Hg19::chr13:23474099..23474105,-#_f50a2d04a6694cef65bf1a842eb5b165p@chr13:23474099..23474105, -
2.39e-66FFCP PHASE2:Hg19::chr1:120285422..120285431,+#_f50a2d04a6694cef65bf1a842eb5b165p10@PHGDH
2.39e-66FFCP PHASE1:Hg19::chr6:33145331..33145378,-#_f50a2d04a6694cef65bf1a842eb5b165p@chr6:33145331..33145378, -
2.39e-66FFCP PHASE1:Hg19::chr15:48442084..48442096,-#_f50a2d04a6694cef65bf1a842eb5b165p9@MYEF2
2.39e-66FFCP PHASE1:Hg19::chr13:45048408..45048415,-#_f50a2d04a6694cef65bf1a842eb5b165p80@TSC22D1
2.39e-66FFCP PHASE1:Hg19::chr13:88463369..88463374,-#_f50a2d04a6694cef65bf1a842eb5b165p3@BC040238
2.39e-66FFCP PHASE2:Hg19::chr15:48442084..48442096,-#_f50a2d04a6694cef65bf1a842eb5b165p9@MYEF2
2.39e-66FFCP PHASE2:Hg19::chr6:33145331..33145378,-#_f50a2d04a6694cef65bf1a842eb5b165p@chr6:33145331..33145378, -
2.39e-66FFCP PHASE2:Hg19::chr13:45048408..45048415,-#_f50a2d04a6694cef65bf1a842eb5b165p80@TSC22D1
2.39e-66FFCP PHASE2:Hg19::chr13:88463369..88463374,-#_f50a2d04a6694cef65bf1a842eb5b165p3@BC040238
4.66e-66FFCP PHASE1:Hg19::chr19:21452713..21452724,-#_8dba9538c7147f7980eef1ec461916eap@chr19:21452713..21452724, -
4.66e-66FFCP PHASE1:Hg19::chr5:37371278..37371289,-#_8dba9538c7147f7980eef1ec461916eap9@NUP155
4.66e-66FFCP PHASE1:Hg19::chr7:75958094..75958103,-#_8dba9538c7147f7980eef1ec461916eap@chr7:75958094..75958103, -
4.66e-66FFCP PHASE1:Hg19::chr13:71293232..71293241,+#_8dba9538c7147f7980eef1ec461916eap@chr13:71293232..71293241, +
4.66e-66FFCP PHASE2:Hg19::chr2:96943971..96943976,-#_8dba9538c7147f7980eef1ec461916eap31@SNRNP200
4.66e-66FFCP PHASE2:Hg19::chr17:46262278..46262285,-#_8dba9538c7147f7980eef1ec461916eap@chr17:46262278..46262285, -
4.66e-66FFCP PHASE2:Hg19::chr5:17302742..17302760,-#_8dba9538c7147f7980eef1ec461916eap@chr5:17302742..17302760, -
4.66e-66FFCP PHASE2:Hg19::chr11:109773840..109773869,-#_8dba9538c7147f7980eef1ec461916eap@chr11:109773840..109773869, -
4.66e-66FFCP PHASE1:Hg19::chr12:38493362..38493371,+#_8dba9538c7147f7980eef1ec461916eap@chr12:38493362..38493371, +
4.66e-66FFCP PHASE1:Hg19::chr11:109773840..109773869,-#_8dba9538c7147f7980eef1ec461916eap@chr11:109773840..109773869, -
4.66e-66FFCP PHASE2:Hg19::chr1:25215144..25215151,+#_8dba9538c7147f7980eef1ec461916eap@chr1:25215144..25215151, +
4.66e-66FFCP PHASE1:Hg19::chr7:112635723..112635728,-#_8dba9538c7147f7980eef1ec461916eap4@ENST00000451962
4.66e-66FFCP PHASE2:Hg19::chr5:37371278..37371289,-#_8dba9538c7147f7980eef1ec461916eap9@NUP155
4.66e-66FFCP PHASE2:Hg19::chr7:75958094..75958103,-#_8dba9538c7147f7980eef1ec461916eap@chr7:75958094..75958103, -
4.66e-66FFCP PHASE2:Hg19::chr13:71293232..71293241,+#_8dba9538c7147f7980eef1ec461916eap@chr13:71293232..71293241, +
4.66e-66FFCP PHASE2:Hg19::chr19:21452713..21452724,-#_8dba9538c7147f7980eef1ec461916eap@chr19:21452713..21452724, -
4.66e-66FFCP PHASE1:Hg19::chr1:156521881..156521893,-#_8dba9538c7147f7980eef1ec461916eap4@IQGAP3
4.66e-66FFCP PHASE1:Hg19::chr3:156502182..156502186,+#_8dba9538c7147f7980eef1ec461916eap@chr3:156502182..156502186, +
4.66e-66FFCP PHASE2:Hg19::chr7:112635723..112635728,-#_8dba9538c7147f7980eef1ec461916eap4@ENST00000451962
4.66e-66FFCP PHASE1:Hg19::chr17:46262278..46262285,-#_8dba9538c7147f7980eef1ec461916eap@chr17:46262278..46262285, -
4.66e-66FFCP PHASE2:Hg19::chr1:156521881..156521893,-#_8dba9538c7147f7980eef1ec461916eap4@IQGAP3
4.66e-66FFCP PHASE2:Hg19::chr3:156502182..156502186,+#_8dba9538c7147f7980eef1ec461916eap@chr3:156502182..156502186, +
4.66e-66FFCP PHASE1:Hg19::chr2:202562827..202562835,-#_8dba9538c7147f7980eef1ec461916eap10@MPP4
4.66e-66FFCP PHASE2:Hg19::chr10:85915432..85915435,-#_8dba9538c7147f7980eef1ec461916eap@chr10:85915432..85915435, -
4.66e-66FFCP PHASE1:Hg19::chr10:85915432..85915435,-#_8dba9538c7147f7980eef1ec461916eap@chr10:85915432..85915435, -
4.66e-66FFCP PHASE1:Hg19::chr4:186854595..186854606,-#_8dba9538c7147f7980eef1ec461916eap73@SORBS2
4.66e-66FFCP PHASE2:Hg19::chr2:202562827..202562835,-#_8dba9538c7147f7980eef1ec461916eap10@MPP4
4.66e-66FFCP PHASE1:Hg19::chr2:96943971..96943976,-#_8dba9538c7147f7980eef1ec461916eap31@SNRNP200
4.66e-66FFCP PHASE2:Hg19::chr12:38493362..38493371,+#_8dba9538c7147f7980eef1ec461916eap@chr12:38493362..38493371, +
4.66e-66FFCP PHASE1:Hg19::chr1:25215144..25215151,+#_8dba9538c7147f7980eef1ec461916eap@chr1:25215144..25215151, +
4.66e-66FFCP PHASE2:Hg19::chr4:186854595..186854606,-#_8dba9538c7147f7980eef1ec461916eap73@SORBS2
4.66e-66FFCP PHASE1:Hg19::chr5:17302742..17302760,-#_8dba9538c7147f7980eef1ec461916eap@chr5:17302742..17302760, -
2.42e-50FFCP PHASE2:Hg19::chr15:33390480..33390491,-#_53955b19ab12d9db2e20741251c16056p@chr15:33390480..33390491, -
2.42e-50FFCP PHASE1:Hg19::chr14:36642956..36642966,+#_53955b19ab12d9db2e20741251c16056p@chr14:36642956..36642966, +
2.42e-50FFCP PHASE1:Hg19::chr5:174252850..174252859,+#_53955b19ab12d9db2e20741251c16056p@chr5:174252850..174252859, +
2.42e-50FFCP PHASE2:Hg19::chr11:117152220..117152232,+#_53955b19ab12d9db2e20741251c16056p11@RNF214
2.42e-50FFCP PHASE1:Hg19::chr11:117152220..117152232,+#_53955b19ab12d9db2e20741251c16056p11@RNF214
2.42e-50FFCP PHASE2:Hg19::chr14:36642956..36642966,+#_53955b19ab12d9db2e20741251c16056p@chr14:36642956..36642966, +
2.42e-50FFCP PHASE2:Hg19::chr5:174252850..174252859,+#_53955b19ab12d9db2e20741251c16056p@chr5:174252850..174252859, +
2.42e-50FFCP PHASE1:Hg19::chr6:18153083..18153085,-#_53955b19ab12d9db2e20741251c16056p@chr6:18153083..18153085, -
2.42e-50FFCP PHASE2:Hg19::chr18:67285940..67285954,-#_53955b19ab12d9db2e20741251c16056p@chr18:67285940..67285954, -
2.42e-50FFCP PHASE1:Hg19::chr6:133319184..133319185,-#_53955b19ab12d9db2e20741251c16056p1@RPL23AP46

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