UBERON:0010009: Difference between revisions
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|located_in= | |located_in= | ||
|name=aggregate regional part of brain | |name=aggregate regional part of brain | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 18:07, 12 September 2014
| Name: | aggregate regional part of brain | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A regional part of brain consisting of multiple brain regions that are not related through a simple volummetric part of hierarchy, e.g., basal ganglia[NIF]." [NIF_GrossAnatomy:nlx_anat_20090509] | ||
| Xrefs: |
| ||
| Synonyms: | "set of nuclei of neuraxis" EXACT [FMA:256381] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002616(regional part of brain) |
|---|
Children
| is a: | UBERON:0010011 (collection of basal ganglia) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10151-102I7 (amygdala, adult, donor10252)
- 10152-102I8 (putamen, adult, donor10252)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10161-103A8 (globus pallidus, adult, donor10252)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10167-103B5 (amygdala - adult, donor10196)
- 10175-103C4 (globus pallidus - adult, donor10196)
- 10176-103C5 (putamen, adult, donor10196)
- 10177-103C6 (caudate nucleus - adult, donor10196)
... further results Mouse (Mus musculus)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10151-102I7 (amygdala, adult, donor10252)
- 10152-102I8 (putamen, adult, donor10252)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10161-103A8 (globus pallidus, adult, donor10252)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10167-103B5 (amygdala - adult, donor10196)
- 10175-103C4 (globus pallidus - adult, donor10196)
- 10176-103C5 (putamen, adult, donor10196)
- 10177-103C6 (caudate nucleus - adult, donor10196)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010009 (aggregate regional part of brain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.82e-133 | FFCP PHASE2:Hg19::chr18:11751466..11751475,+#_f5aeaddf46c23a6bf89eb166a044e268 | p22@GNAL |
| 1.82e-133 | FFCP PHASE1:Hg19::chr18:11751466..11751475,+#_f5aeaddf46c23a6bf89eb166a044e268 | p22@GNAL |
| 1.42e-130 | FFCP PHASE2:Hg19::chr15:40582949..40582989,+#_0d5e60ea51f41a9dd5f38e786e277b34 | p@chr15:40582949..40582989, + |
| 1.42e-130 | FFCP PHASE1:Hg19::chr15:40582949..40582989,+#_0d5e60ea51f41a9dd5f38e786e277b34 | p@chr15:40582949..40582989, + |
| 1.21e-118 | FFCP PHASE1:Hg19::chr3:35722978..35722999,+#_9eeb0a3ec917130a8471370d3e7c0037 | p28@ARPP21 |
| 1.21e-118 | FFCP PHASE2:Hg19::chr3:35722978..35722999,+#_9eeb0a3ec917130a8471370d3e7c0037 | p28@ARPP21 |
| 3.02e-112 | FFCP PHASE2:Hg19::chr13:98995904..98995913,+#_22c890d6eec46d762516903755acb474 | p@chr13:98995904..98995913, + |
| 3.02e-112 | FFCP PHASE1:Hg19::chr13:98995904..98995913,+#_22c890d6eec46d762516903755acb474 | p@chr13:98995904..98995913, + |
| 3.66e-112 | FFCP PHASE2:Hg19::chr11:80886203..80886231,+#_97817e3c73366744c13b77f293304e33 | p@chr11:80886203..80886231, + |
| 3.66e-112 | FFCP PHASE1:Hg19::chr11:80886203..80886231,+#_97817e3c73366744c13b77f293304e33 | p@chr11:80886203..80886231, + |
| 6.51e-112 | FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_b53229448965931f8ba586f4e972f0bc | p@chr2:7112752..7112770, + |
| 6.51e-112 | FFCP PHASE2:Hg19::chr2:7112752..7112770,+#_b53229448965931f8ba586f4e972f0bc | p@chr2:7112752..7112770, + |
| 7.88e-112 | FFCP PHASE1:Hg19::chr22:27727810..27727817,+#_1a86cfb26b5d299b09f6e3da4e769829 | p3@ENST00000413244 |
| 7.88e-112 | FFCP PHASE2:Hg19::chr22:27727810..27727817,+#_1a86cfb26b5d299b09f6e3da4e769829 | p3@ENST00000413244 |
| 4.6e-109 | FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_fc5bdd5c406b7fef78f66cccaca3f573 | p@chr15:35546024..35546035, - |
| 4.6e-109 | FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_fc5bdd5c406b7fef78f66cccaca3f573 | p@chr2:3853961..3853984, + |
| 4.6e-109 | FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_fc5bdd5c406b7fef78f66cccaca3f573 | p@chr15:35546024..35546035, - |
| 4.6e-109 | FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_fc5bdd5c406b7fef78f66cccaca3f573 | p@chr2:3853961..3853984, + |
| 4.6e-109 | FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_fc5bdd5c406b7fef78f66cccaca3f573 | p@chr17:19390211..19390223, + |
| 4.6e-109 | FFCP PHASE2:Hg19::chr19:719510..719520,+#_fc5bdd5c406b7fef78f66cccaca3f573 | p@chr19:719510..719520, + |
| 4.6e-109 | FFCP PHASE1:Hg19::chr19:719510..719520,+#_fc5bdd5c406b7fef78f66cccaca3f573 | p@chr19:719510..719520, + |
| 4.6e-109 | FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_fc5bdd5c406b7fef78f66cccaca3f573 | p@chr17:19390211..19390223, + |
| 4.01e-107 | FFCP PHASE1:Hg19::chr18:11751516..11751523,+#_96971685d46c45cd9e21e0cf05fa2a9a | p17@GNAL |
| 4.01e-107 | FFCP PHASE2:Hg19::chr18:11751516..11751523,+#_96971685d46c45cd9e21e0cf05fa2a9a | p17@GNAL |
| 1.41e-106 | FFCP PHASE1:Hg19::chr21:43917191..43917207,-#_ff842847903ef1bdac1f16d7f71ffd9a | p@chr21:43917191..43917207, - |
| 1.41e-106 | FFCP PHASE2:Hg19::chr21:43917191..43917207,-#_ff842847903ef1bdac1f16d7f71ffd9a | p@chr21:43917191..43917207, - |
| 3.33e-98 | FFCP PHASE2:Hg19::chr11:18765839..18765846,-#_ff05fdecc10a0831f767d47b6c3e34d4 | p10@PTPN5 |
| 3.33e-98 | FFCP PHASE1:Hg19::chr11:18765839..18765846,-#_ff05fdecc10a0831f767d47b6c3e34d4 | p10@PTPN5 |
| 1.43e-97 | FFCP PHASE2:Hg19::chr13:98995923..98995941,+#_dca22e73be6ec84997d3e3fade24f22c | p@chr13:98995923..98995941, + |
| 1.43e-97 | FFCP PHASE1:Hg19::chr13:98995923..98995941,+#_dca22e73be6ec84997d3e3fade24f22c | p@chr13:98995923..98995941, + |
| 4.08e-91 | FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_0ef7d5d2df23c7e3c03af93fe7a37758 | p@chr11:26497871..26497889, + |
| 4.08e-91 | FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_0ef7d5d2df23c7e3c03af93fe7a37758 | p@chr11:26497871..26497889, + |
| 4.08e-91 | FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_0ef7d5d2df23c7e3c03af93fe7a37758 | p@chr10:97261901..97261919, - |
| 4.08e-91 | FFCP PHASE1:Hg19::chr10:97261901..97261919,-#_0ef7d5d2df23c7e3c03af93fe7a37758 | p@chr10:97261901..97261919, - |
| 4.91e-91 | FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_152f121951bc63186e1c9002ebbe4acc | p1@ENST00000421878 |
| 4.91e-91 | FFCP PHASE2:Hg19::chr22:24828830..24828842,+#_152f121951bc63186e1c9002ebbe4acc | p14@ADORA2A |
| 4.91e-91 | FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_152f121951bc63186e1c9002ebbe4acc | p1@ENST00000421878 |
| 4.91e-91 | FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_152f121951bc63186e1c9002ebbe4acc | p@chr19:1236637..1236645, - |
| 4.91e-91 | FFCP PHASE1:Hg19::chr11:26495467..26495474,+#_152f121951bc63186e1c9002ebbe4acc | p8@ANO3 |
| 4.91e-91 | FFCP PHASE1:Hg19::chr22:24828830..24828842,+#_152f121951bc63186e1c9002ebbe4acc | p14@ADORA2A |
| 4.91e-91 | FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_152f121951bc63186e1c9002ebbe4acc | p@chr19:1236637..1236645, - |
| 4.91e-91 | FFCP PHASE2:Hg19::chr11:26495467..26495474,+#_152f121951bc63186e1c9002ebbe4acc | p8@ANO3 |
| 1.7e-89 | FFCP PHASE1:Hg19::chr11:18765553..18765567,-#_e09e07564b7f70eb8ca42f8df975694b | p7@PTPN5 |
| 1.7e-89 | FFCP PHASE2:Hg19::chr1:174417095..174417131,+#_e09e07564b7f70eb8ca42f8df975694b | p1@GPR52 |
| 1.7e-89 | FFCP PHASE1:Hg19::chr1:174417095..174417131,+#_e09e07564b7f70eb8ca42f8df975694b | p1@GPR52 |
| 1.7e-89 | FFCP PHASE2:Hg19::chr11:18765553..18765567,-#_e09e07564b7f70eb8ca42f8df975694b | p7@PTPN5 |
| 2.51e-89 | FFCP PHASE1:Hg19::chr1:101003675..101003682,+#_57e5b15b54f08b5b3293155793e6fbe4 | p5@GPR88 |
| 2.51e-89 | FFCP PHASE2:Hg19::chr1:101003675..101003682,+#_57e5b15b54f08b5b3293155793e6fbe4 | p5@GPR88 |
| 2.86e-89 | FFCP PHASE1:Hg19::chr11:67174819..67174825,-#_f8585fec163d767f7fcbba8264df984f | p14@PPP1CA |
| 2.86e-89 | FFCP PHASE2:Hg19::chr11:67174819..67174825,-#_f8585fec163d767f7fcbba8264df984f | p14@PPP1CA |
| 4.81e-88 | FFCP PHASE2:Hg19::chr11:18765881..18765897,-#_bdc200995b0c0da9b83552dd8e1380c3 | p3@PTPN5 |
| 4.81e-88 | FFCP PHASE1:Hg19::chr11:18765881..18765897,-#_bdc200995b0c0da9b83552dd8e1380c3 | p3@PTPN5 |
| 1.33e-87 | FFCP PHASE1:Hg19::chr17:19390234..19390251,+#_ce0855f619f3fd4d36b127435d9f12a7 | p@chr17:19390234..19390251, + |
| 1.33e-87 | FFCP PHASE2:Hg19::chr17:19390234..19390251,+#_ce0855f619f3fd4d36b127435d9f12a7 | p@chr17:19390234..19390251, + |
| 1.37e-87 | FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_200b5a0310c3309103abd9bd3fb87958 | p@chr13:112726433..112726446, + |
| 1.37e-87 | FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_200b5a0310c3309103abd9bd3fb87958 | p@chr14:78638610..78638621, + |
| 1.37e-87 | FFCP PHASE1:Hg19::chr15:35546154..35546174,-#_200b5a0310c3309103abd9bd3fb87958 | p@chr15:35546154..35546174, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr8:25281776..25281779,-#_200b5a0310c3309103abd9bd3fb87958 | p1@GNRH1 |
| 1.37e-87 | FFCP PHASE1:Hg19::chr7:22382758..22382765,-#_200b5a0310c3309103abd9bd3fb87958 | p@chr7:22382758..22382765, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_200b5a0310c3309103abd9bd3fb87958 | p@chr2:152828264..152828299, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr7:29846088..29846091,+#_200b5a0310c3309103abd9bd3fb87958 | p20@WIPF3 |
| 1.37e-87 | FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_200b5a0310c3309103abd9bd3fb87958 | p@chr18:47967428..47967437, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_200b5a0310c3309103abd9bd3fb87958 | p@chr18:47967428..47967437, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_200b5a0310c3309103abd9bd3fb87958 | p@chr1:31352916..31352926, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr8:25281776..25281779,-#_200b5a0310c3309103abd9bd3fb87958 | p1@GNRH1 |
| 1.37e-87 | FFCP PHASE2:Hg19::chr7:22382758..22382765,-#_200b5a0310c3309103abd9bd3fb87958 | p@chr7:22382758..22382765, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_200b5a0310c3309103abd9bd3fb87958 | p@chr12:6031299..6031315, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr8:19799565..19799589,-#_200b5a0310c3309103abd9bd3fb87958 | p@chr8:19799565..19799589, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr8:19799565..19799589,-#_200b5a0310c3309103abd9bd3fb87958 | p@chr8:19799565..19799589, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr15:35546154..35546174,-#_200b5a0310c3309103abd9bd3fb87958 | p@chr15:35546154..35546174, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_200b5a0310c3309103abd9bd3fb87958 | p@chr1:31352916..31352926, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_200b5a0310c3309103abd9bd3fb87958 | p@chr14:78638610..78638621, + |
| 1.37e-87 | FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_200b5a0310c3309103abd9bd3fb87958 | p@chr2:152828264..152828299, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_200b5a0310c3309103abd9bd3fb87958 | p@chr13:112726433..112726446, + |
| 1.37e-87 | FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_200b5a0310c3309103abd9bd3fb87958 | p@chr12:6031299..6031315, - |
| 1.37e-87 | FFCP PHASE2:Hg19::chr7:29846088..29846091,+#_200b5a0310c3309103abd9bd3fb87958 | p20@WIPF3 |
| 1.79e-87 | FFCP PHASE2:Hg19::chr11:26495447..26495461,+#_c44f41648eb2fa87b6e418f7686d969f | p5@ANO3 |
| 1.79e-87 | FFCP PHASE1:Hg19::chr10:73313437..73313451,-#_c44f41648eb2fa87b6e418f7686d969f | p@chr10:73313437..73313451, - |
| 1.79e-87 | FFCP PHASE2:Hg19::chr10:73313437..73313451,-#_c44f41648eb2fa87b6e418f7686d969f | p@chr10:73313437..73313451, - |
| 1.79e-87 | FFCP PHASE1:Hg19::chr11:26495447..26495461,+#_c44f41648eb2fa87b6e418f7686d969f | p5@ANO3 |
| 2.08e-87 | FFCP PHASE1:Hg19::chr3:16851273..16851310,+#_2fee23c448ecb1b54ed0ccc362c51387 | p@chr3:16851273..16851310, + |
| 2.08e-87 | FFCP PHASE2:Hg19::chr3:16851273..16851310,+#_2fee23c448ecb1b54ed0ccc362c51387 | p@chr3:16851273..16851310, + |
| 2.42e-87 | FFCP PHASE1:Hg19::chr7:67899920..67899958,-#_ee8617d746c69f416877b0cd53aece22 | p@chr7:67899920..67899958, - |
| 2.42e-87 | FFCP PHASE2:Hg19::chr7:67899920..67899958,-#_ee8617d746c69f416877b0cd53aece22 | p@chr7:67899920..67899958, - |
| 2.8e-87 | FFCP PHASE2:Hg19::chr9:95569585..95569596,+#_d1a3835ecba172f4f30efab1122c64cc | p@chr9:95569585..95569596, + |
| 2.8e-87 | FFCP PHASE1:Hg19::chr9:95569585..95569596,+#_d1a3835ecba172f4f30efab1122c64cc | p@chr9:95569585..95569596, + |
| 4.39e-83 | FFCP PHASE2:Hg19::chr18:11751493..11751507,+#_221982d148ab154064bedc04849eea10 | p12@GNAL |
| 4.39e-83 | FFCP PHASE1:Hg19::chr18:11751493..11751507,+#_221982d148ab154064bedc04849eea10 | p12@GNAL |
| 3.09e-79 | FFCP PHASE1:Hg19::chr11:13461601..13461620,-#_1e633958dd1fd8a6937cbc06cb964725 | p5@BTBD10 |
| 3.09e-79 | FFCP PHASE2:Hg19::chr11:13461601..13461620,-#_1e633958dd1fd8a6937cbc06cb964725 | p5@BTBD10 |
| 5.29e-79 | FFCP PHASE2:Hg19::chr6:166076645..166076657,-#_8a473f5433ef39e818c0a95754ff5a32 | p@chr6:166076645..166076657, - |
| 5.29e-79 | FFCP PHASE1:Hg19::chr6:166076645..166076657,-#_8a473f5433ef39e818c0a95754ff5a32 | p@chr6:166076645..166076657, - |
| 6.06e-79 | FFCP PHASE2:Hg19::chr2:26781521..26781537,-#_8be7f06153ec6da667f8d2b45b071749 | p2@OTOF |
| 6.06e-79 | FFCP PHASE1:Hg19::chr22:27727719..27727726,+#_8be7f06153ec6da667f8d2b45b071749 | p2@ENST00000413244 |
| 6.06e-79 | FFCP PHASE2:Hg19::chr11:18765589..18765610,-#_8be7f06153ec6da667f8d2b45b071749 | p6@PTPN5 |
| 6.06e-79 | FFCP PHASE2:Hg19::chr22:27727719..27727726,+#_8be7f06153ec6da667f8d2b45b071749 | p2@ENST00000413244 |
| 6.06e-79 | FFCP PHASE1:Hg19::chr2:26781521..26781537,-#_8be7f06153ec6da667f8d2b45b071749 | p2@OTOF |
| 6.06e-79 | FFCP PHASE1:Hg19::chr11:18765589..18765610,-#_8be7f06153ec6da667f8d2b45b071749 | p6@PTPN5 |
| 6.93e-79 | FFCP PHASE2:Hg19::chr19:19640188..19640201,+#_15d7344995935eb80ba0eb576a3cc556 | p@chr19:19640188..19640201, + |
| 6.93e-79 | FFCP PHASE1:Hg19::chr19:19640188..19640201,+#_15d7344995935eb80ba0eb576a3cc556 | p@chr19:19640188..19640201, + |
