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{{UBERON
{{UBERON
|id=UBERON:0010316
|alt_id=
|name=germ layer / neural crest
|namespace=
|def=
|xref=
|is_a=UBERON:0005291
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0002532
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010316
|is_a=UBERON:0005291
|is_obsolete=
|located_in=
|located_in=
|name=germ layer / neural crest
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
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|xref=
}}
}}

Latest revision as of 18:09, 12 September 2014

Name:germ layer / neural crest
Namespace:FANTOM

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005291(embryonic tissue)
develops_from:UBERON:0002532(epiblast (generic))



Children

is a:UBERON:0000923 (germ layer),UBERON:0002342 (neural crest)
develops from:UBERON:0010317 (germ layer / neural crest derived structure)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010316 (germ layer / neural crest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.5e-31FFCP PHASE2:Hg19::chr20:23618584..23618603,-#_256d82c877ea551ba5134aebea3042a2p1@CST3
7.5e-31FFCP PHASE1:Hg19::chr20:23618584..23618603,-#_256d82c877ea551ba5134aebea3042a2p1@CST3
6.91e-29FFCP PHASE1:Hg19::chr13:77460532..77460548,-#_0a885fc5d29167bf79045550ed94e155p1@KCTD12
6.91e-29FFCP PHASE2:Hg19::chr13:77460532..77460548,-#_0a885fc5d29167bf79045550ed94e155p1@KCTD12
1.31e-28FFCP PHASE1:Hg19::chr13:45010939..45011033,-#_b0add6070627175df01aa081b0fa5acap1@TSC22D1
1.31e-28FFCP PHASE2:Hg19::chr13:45010939..45011033,-#_b0add6070627175df01aa081b0fa5acap1@TSC22D1
6.82e-28FFCP PHASE1:Hg19::chr2:230135937..230136016,-#_9151058bcb2c377d9898700aff2bb70bp1@PID1
6.82e-28FFCP PHASE2:Hg19::chr2:230135937..230136016,-#_9151058bcb2c377d9898700aff2bb70bp1@PID1
1.74e-26FFCP PHASE1:Hg19::chr7:111846435..111846471,-#_5d9dc0fadd10e80a68a55c122c670fe2p1@DOCK4
1.74e-26FFCP PHASE2:Hg19::chr7:111846435..111846471,-#_5d9dc0fadd10e80a68a55c122c670fe2p1@DOCK4
4.12e-26FFCP PHASE2:Hg19::chr11:1330834..1330875,-#_c57a3c3c832e4cb3478a1a20010d99dap1@TOLLIP
4.12e-26FFCP PHASE1:Hg19::chr11:1330834..1330875,-#_c57a3c3c832e4cb3478a1a20010d99dap1@TOLLIP
6.68e-25FFCP PHASE1:Hg19::chr12:112204714..112204781,+#_0aac509350b31b99356bf6c76f3abbb7p1@ALDH2
6.68e-25FFCP PHASE2:Hg19::chr12:112204714..112204781,+#_0aac509350b31b99356bf6c76f3abbb7p1@ALDH2
6.83e-25FFCP PHASE2:Hg19::chr13:77460594..77460613,-#_3920210624824232d400f935e5f8d795p3@KCTD12
6.83e-25FFCP PHASE1:Hg19::chr13:77460594..77460613,-#_3920210624824232d400f935e5f8d795p3@KCTD12
1.27e-24FFCP PHASE2:Hg19::chr4:85887789..85887862,-#_98e49a6692b657accdc6818d39f7ca49p1@WDFY3
1.27e-24FFCP PHASE1:Hg19::chr4:85887789..85887862,-#_98e49a6692b657accdc6818d39f7ca49p1@WDFY3
6.07e-24FFCP PHASE2:Hg19::chr16:4852616..4852679,-#_3b3dbc2c9c144d21a4bdee912a09553cp1@ROGDI
6.07e-24FFCP PHASE1:Hg19::chr16:4852616..4852679,-#_3b3dbc2c9c144d21a4bdee912a09553cp1@ROGDI
1.62e-23FFCP PHASE1:Hg19::chr1:183774240..183774270,+#_e70b4ed08a2f573f4cf99336400f7c6bp1@RGL1
1.62e-23FFCP PHASE2:Hg19::chr1:183774240..183774270,+#_e70b4ed08a2f573f4cf99336400f7c6bp1@RGL1
2.33e-23FFCP PHASE1:Hg19::chr8:30670289..30670354,-#_1086ee59c55ccc428e5b4740e7f6fdc1p1@PPP2CB
2.33e-23FFCP PHASE2:Hg19::chr8:30670289..30670354,-#_1086ee59c55ccc428e5b4740e7f6fdc1p1@PPP2CB
2.57e-23FFCP PHASE2:Hg19::chr13:77460635..77460654,-#_dc6d48af7796bd957cd349995e108164p2@KCTD12
2.57e-23FFCP PHASE1:Hg19::chr13:77460635..77460654,-#_dc6d48af7796bd957cd349995e108164p2@KCTD12
4.06e-23FFCP PHASE1:Hg19::chr4:159094160..159094185,-#_893431a2ad17bf2fc3727919efceedbap2@FAM198B
4.06e-23FFCP PHASE2:Hg19::chr4:159094160..159094185,-#_893431a2ad17bf2fc3727919efceedbap2@FAM198B
6.15e-23FFCP PHASE1:Hg19::chr15:90456156..90456198,-#_8f5cb1440ef1b828fb8bdf57a999612bp1@C15orf38
6.15e-23FFCP PHASE2:Hg19::chr15:90456156..90456198,-#_8f5cb1440ef1b828fb8bdf57a999612bp1@C15orf38
7.82e-23FFCP PHASE2:Hg19::chr19:40871734..40871809,+#_1cc1ae1b3d54c3d43e5e8c1b3e409995p1@PLD3
7.82e-23FFCP PHASE1:Hg19::chr19:40871734..40871809,+#_1cc1ae1b3d54c3d43e5e8c1b3e409995p1@PLD3
1.53e-22FFCP PHASE2:Hg19::chr16:2563989..2564006,+#_078710a8ee79a757cbc8aafa9319f7cfp2@ATP6V0C
1.53e-22FFCP PHASE1:Hg19::chr16:2563989..2564006,+#_078710a8ee79a757cbc8aafa9319f7cfp2@ATP6V0C
2.37e-22FFCP PHASE1:Hg19::chr20:35974484..35974529,+#_fdd32a863bdd8b084aac838c66b6efc6p2@SRC
2.37e-22FFCP PHASE2:Hg19::chr20:35974484..35974529,+#_fdd32a863bdd8b084aac838c66b6efc6p2@SRC
5.65e-22FFCP PHASE2:Hg19::chr11:65082349..65082378,+#_55ae5a076096bf7d54227d0668b318b9p1@CDC42EP2
5.65e-22FFCP PHASE1:Hg19::chr11:65082349..65082378,+#_55ae5a076096bf7d54227d0668b318b9p1@CDC42EP2
5.66e-22FFCP PHASE2:Hg19::chr17:1466030..1466129,-#_28c3d6c39e7ad3402e51b103a2547bd7p1@PITPNA
5.66e-22FFCP PHASE1:Hg19::chr17:1466030..1466129,-#_28c3d6c39e7ad3402e51b103a2547bd7p1@PITPNA
5.93e-22FFCP PHASE1:Hg19::chr19:6720653..6720670,-#_5b4ca65abdfc1f391715bde4eb6b5668p1@C3
5.93e-22FFCP PHASE2:Hg19::chr19:6720653..6720670,-#_5b4ca65abdfc1f391715bde4eb6b5668p1@C3
6.18e-22FFCP PHASE2:Hg19::chr7:2671611..2671658,+#_729109e95556e91cb13d844531ce594fp2@TTYH3
6.18e-22FFCP PHASE1:Hg19::chr7:2671611..2671658,+#_729109e95556e91cb13d844531ce594fp2@TTYH3
1.1e-21FFCP PHASE2:Hg19::chr2:127864839..127864888,-#_41c09562a9802933db52ec28c23280cdp2@BIN1
1.1e-21FFCP PHASE1:Hg19::chr2:127864839..127864888,-#_41c09562a9802933db52ec28c23280cdp2@BIN1
2.41e-21FFCP PHASE2:Hg19::chr17:73851380..73851427,-#_bc343025812a91bfecb58c9d394a4066p1@WBP2
2.41e-21FFCP PHASE1:Hg19::chr17:73851380..73851427,-#_bc343025812a91bfecb58c9d394a4066p1@WBP2
3.59e-21FFCP PHASE1:Hg19::chr22:31003154..31003188,+#_92504f2e482c9ee0ef0e7a6aa3d8b182p1@TCN2
3.59e-21FFCP PHASE2:Hg19::chr22:31003154..31003188,+#_92504f2e482c9ee0ef0e7a6aa3d8b182p1@TCN2
3.69e-21FFCP PHASE1:Hg19::chr9:14314566..14314618,-#_ce870c9af84d1bccdcbef214566e0002p1@NFIB
3.69e-21FFCP PHASE2:Hg19::chr9:14314566..14314618,-#_ce870c9af84d1bccdcbef214566e0002p1@NFIB
4.02e-21FFCP PHASE1:Hg19::chr9:14314131..14314147,-#_b0fe3dbc8bbea3de82c474be240006bcp2@NFIB
4.02e-21FFCP PHASE2:Hg19::chr9:14314131..14314147,-#_b0fe3dbc8bbea3de82c474be240006bcp2@NFIB
4.54e-21FFCP PHASE2:Hg19::chr19:44100155..44100211,-#_7c1216b455cb45c0891b76023df63c10p1@IRGQ
4.54e-21FFCP PHASE1:Hg19::chr19:44100155..44100211,-#_7c1216b455cb45c0891b76023df63c10p1@IRGQ
5.7e-21FFCP PHASE2:Hg19::chr4:24914581..24914691,-#_9f02eac27a33433fda83b1ea3d469f27p1@CCDC149
5.7e-21FFCP PHASE1:Hg19::chr4:24914581..24914691,-#_9f02eac27a33433fda83b1ea3d469f27p1@CCDC149
6.27e-21FFCP PHASE2:Hg19::chr2:127864608..127864688,-#_11fe85a43e5e12c974b0ef82bd0d4375p1@BIN1
6.27e-21FFCP PHASE1:Hg19::chr2:127864608..127864688,-#_11fe85a43e5e12c974b0ef82bd0d4375p1@BIN1
1.02e-20FFCP PHASE1:Hg19::chr19:14228541..14228582,-#_afa6a7b4fc9db4af08da8e416d8967ebp1@PRKACA
1.02e-20FFCP PHASE2:Hg19::chr19:14228541..14228582,-#_afa6a7b4fc9db4af08da8e416d8967ebp1@PRKACA
1.29e-20FFCP PHASE2:Hg19::chr16:89787269..89787359,-#_d6cdba83c4c22756362982517ef3afb2p1@C16orf7
1.29e-20FFCP PHASE1:Hg19::chr16:89787269..89787359,-#_d6cdba83c4c22756362982517ef3afb2p1@C16orf7
1.45e-20FFCP PHASE1:Hg19::chr1:10270620..10270637,+#_d5c0f7a4377dbde049d513f5f291794cp1@KIF1B
1.45e-20FFCP PHASE2:Hg19::chr1:10270620..10270637,+#_d5c0f7a4377dbde049d513f5f291794cp1@KIF1B
2.63e-20FFCP PHASE2:Hg19::chr18:59561635..59561651,-#_4358bbc4a9d6e249a2c396eb6a383b12p@chr18:59561635..59561651, -
2.63e-20FFCP PHASE1:Hg19::chr18:59561635..59561651,-#_4358bbc4a9d6e249a2c396eb6a383b12p@chr18:59561635..59561651, -
3.08e-20FFCP PHASE1:Hg19::chr12:52345448..52345532,+#_aabf0b469747374b801b06a5c370d26bp1@ACVR1B
3.08e-20FFCP PHASE2:Hg19::chr12:52345448..52345532,+#_aabf0b469747374b801b06a5c370d26bp1@ACVR1B
3.96e-20FFCP PHASE2:Hg19::chr20:23614485..23614564,-#_d7295e16103af3d3f6fa9e3a5f09bcf3p@chr20:23614485..23614564, -
3.96e-20FFCP PHASE1:Hg19::chr20:23614485..23614564,-#_d7295e16103af3d3f6fa9e3a5f09bcf3p@chr20:23614485..23614564, -
5.35e-20FFCP PHASE1:Hg19::chr1:68698197..68698214,-#_0a4a5ca46a5b372e5e917eca72da4230p1@WLS
5.35e-20FFCP PHASE2:Hg19::chr1:68698197..68698214,-#_0a4a5ca46a5b372e5e917eca72da4230p1@WLS
6.51e-20FFCP PHASE1:Hg19::chr10:30025922..30025958,-#_772342fabf2020bbb1fdece5313d8ad2p3@SVIL
6.51e-20FFCP PHASE2:Hg19::chr10:30025922..30025958,-#_772342fabf2020bbb1fdece5313d8ad2p3@SVIL
6.99e-20FFCP PHASE1:Hg19::chr15:64995399..64995422,-#_e3c3b3816acd078c33b0447e94d93520p1@OAZ2
6.99e-20FFCP PHASE2:Hg19::chr15:64995399..64995422,-#_e3c3b3816acd078c33b0447e94d93520p1@OAZ2
8.06e-20FFCP PHASE1:Hg19::chr9:34989685..34989748,+#_0138781322affb02dc97e275aea60792p1@DNAJB5
8.06e-20FFCP PHASE2:Hg19::chr9:34989685..34989748,+#_0138781322affb02dc97e275aea60792p1@DNAJB5
9.9e-20FFCP PHASE1:Hg19::chrX:100333858..100333876,+#_bfb1ae6d49bb87a6b3f3f9eba96130fcp1@TMEM35
9.9e-20FFCP PHASE2:Hg19::chrX:100333858..100333876,+#_bfb1ae6d49bb87a6b3f3f9eba96130fcp1@TMEM35
1.09e-19FFCP PHASE1:Hg19::chr16:2563941..2563983,+#_562c416734ba2ea54680133705740f45p1@ATP6V0C
1.09e-19FFCP PHASE2:Hg19::chr16:2563941..2563983,+#_562c416734ba2ea54680133705740f45p1@ATP6V0C
1.11e-19FFCP PHASE2:Hg19::chr17:68165657..68165688,+#_4d6e1754d94bf92e8961588a20adaeebp1@KCNJ2
1.11e-19FFCP PHASE1:Hg19::chr17:68165657..68165688,+#_4d6e1754d94bf92e8961588a20adaeebp1@KCNJ2
1.12e-19FFCP PHASE2:Hg19::chr17:7492684..7492778,-#_bdb3180386eb6d27e32e52a49d4918e8p2@SOX15
1.12e-19FFCP PHASE1:Hg19::chr17:7492684..7492778,-#_bdb3180386eb6d27e32e52a49d4918e8p2@SOX15
1.16e-19FFCP PHASE1:Hg19::chr19:11466086..11466159,+#_563444897d2efa09968f032d920cdfbbp1@LPPR2
1.16e-19FFCP PHASE2:Hg19::chr19:11466086..11466159,+#_563444897d2efa09968f032d920cdfbbp1@LPPR2
1.32e-19FFCP PHASE1:Hg19::chr18:59561658..59561685,-#_0b4e9b8f283994fff86b236cff2e8712p@chr18:59561658..59561685, -
1.32e-19FFCP PHASE2:Hg19::chr18:59561658..59561685,-#_0b4e9b8f283994fff86b236cff2e8712p@chr18:59561658..59561685, -
1.38e-19FFCP PHASE1:Hg19::chr12:110719036..110719113,+#_9d052bc3e1a9305a8db5684427c56ce6p1@ATP2A2
1.38e-19FFCP PHASE2:Hg19::chr12:110719036..110719113,+#_9d052bc3e1a9305a8db5684427c56ce6p1@ATP2A2
1.45e-19FFCP PHASE1:Hg19::chr6:123110389..123110441,+#_182c49bb53f3984a899ce0b62005088cp1@SMPDL3A
1.45e-19FFCP PHASE2:Hg19::chr6:123110389..123110441,+#_182c49bb53f3984a899ce0b62005088cp1@SMPDL3A
1.86e-19FFCP PHASE1:Hg19::chr10:118764649..118764683,-#_ae9fa991454446dd411d5524d5adfca4p2@KIAA1598
1.86e-19FFCP PHASE2:Hg19::chr10:118764649..118764683,-#_ae9fa991454446dd411d5524d5adfca4p2@KIAA1598
3.3e-19FFCP PHASE2:Hg19::chr2:153191678..153191697,+#_e4e5d5e4f02a4cc59190b7535bfad104p1@FMNL2
3.3e-19FFCP PHASE1:Hg19::chr2:153191678..153191697,+#_e4e5d5e4f02a4cc59190b7535bfad104p1@FMNL2

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