FFCP PHASE1:Hg19::chr12:105962745..105962748,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:105962745..105962748,+ | |||
|coexpression_cluster_id=C3225 | |coexpression_cluster_id=C3225 | ||
|description=CAGE_peak_at_chr12:105962745..105962748,+ | |description=CAGE_peak_at_chr12:105962745..105962748,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002139!2.59e-19!24;CL:0002078!1.82e-13!44;CL:0000115!4.92e-12!35;CL:0005020!1.31e-11!6;CL:0002138!1.31e-11!6;CL:0005022!1.31e-11!6;CL:0000071!9.17e-11!18;CL:0002546!9.17e-11!18;CL:0000213!2.34e-09!57;CL:0000215!2.34e-09!57;CL:0002618!2.64e-09!3;CL:0002543!8.63e-08!6;CL:1000413!2.60e-07!9 | |ontology_enrichment_celltype=CL:0002139!2.59e-19!24;CL:0002078!1.82e-13!44;CL:0000115!4.92e-12!35;CL:0005020!1.31e-11!6;CL:0002138!1.31e-11!6;CL:0005022!1.31e-11!6;CL:0000071!9.17e-11!18;CL:0002546!9.17e-11!18;CL:0000213!2.34e-09!57;CL:0000215!2.34e-09!57;CL:0002618!2.64e-09!3;CL:0002543!8.63e-08!6;CL:1000413!2.60e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002618;3.03e-98;3!CL:0002543;1.05e-49;6!CL:0002139;1.24e-34;24!CL:0002138;5.13e-23;6!CL:0000115;4.55e-18;36!CL:0000047;8.34e-18;2!CL:0000071;3.30e-17;18!CL:0000213;8.41e-11;58!CL:0000215;8.41e-11;58!CL:0002078;1.35e-10;45 | |ontology_enrichment_celltype_v019=CL:0002618;3.03e-98;3!CL:0002543;1.05e-49;6!CL:0002139;1.24e-34;24!CL:0002138;5.13e-23;6!CL:0000115;4.55e-18;36!CL:0000047;8.34e-18;2!CL:0000071;3.30e-17;18!CL:0000213;8.41e-11;58!CL:0000215;8.41e-11;58!CL:0002078;1.35e-10;45 | ||
|ontology_enrichment_celltype_v019_2=CL:0002618,3.03e-98,3;CL:0002543,1.05e-49,6;CL:0002139,1.20e-34,24;CL:0000115,2.54e-23,36;CL:0005020,4.86e-23,6;CL:0002138,4.86e-23,6;CL:0005022,4.86e-23,6;CL:0002078,8.89e-19,45;CL:0000071,3.30e-17,18;CL:0002546,3.30e-17,18;CL:0000213,1.09e-14,58;CL:0000215,1.09e-14,58;CL:0000222,2.95e-07,121 | |||
|ontology_enrichment_development_v019=CL:0005022;5.13e-23;6!CL:0002546;3.30e-17;18 | |ontology_enrichment_development_v019=CL:0005022;5.13e-23;6!CL:0002546;3.30e-17;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!9.17e-11!18;UBERON:0004638!9.17e-11!18;UBERON:0004852!9.17e-11!18;UBERON:0006914!6.66e-09!25;UBERON:0001473!1.43e-08!8;UBERON:0004536!1.43e-08!8;UBERON:0006558!1.43e-08!8;UBERON:0000487!1.91e-08!22;UBERON:0003915!2.60e-07!9;UBERON:0004700!2.60e-07!9;UBERON:0001917!2.60e-07!9;UBERON:0000055!4.09e-07!69;UBERON:0002465!9.54e-07!10 | |ontology_enrichment_uberon=UBERON:0001986!9.17e-11!18;UBERON:0004638!9.17e-11!18;UBERON:0004852!9.17e-11!18;UBERON:0006914!6.66e-09!25;UBERON:0001473!1.43e-08!8;UBERON:0004536!1.43e-08!8;UBERON:0006558!1.43e-08!8;UBERON:0000487!1.91e-08!22;UBERON:0003915!2.60e-07!9;UBERON:0004700!2.60e-07!9;UBERON:0001917!2.60e-07!9;UBERON:0000055!4.09e-07!69;UBERON:0002465!9.54e-07!10 | ||
|ontology_enrichment_uberon_v019=UBERON:0002066;2.01e-59;5!UBERON:0001638;1.73e-33;9!UBERON:0010260;1.73e-33;9!UBERON:0003920;1.73e-33;9!UBERON:0004582;1.73e-33;9!UBERON:0001473;1.50e-17;8!UBERON:0004536;1.50e-17;8!UBERON:0006558;1.50e-17;8!UBERON:0004638;3.30e-17;18!UBERON:0001986;3.30e-17;18!UBERON:0004852;3.30e-17;18!UBERON:0002465;2.94e-14;10!UBERON:0000487;3.13e-14;22!UBERON:0006914;1.28e-12;25!UBERON:0000490;1.79e-07;33!UBERON:0002049;3.71e-07;75!UBERON:0007798;3.71e-07;75!UBERON:0000055;7.50e-07;65 | |ontology_enrichment_uberon_v019=UBERON:0002066;2.01e-59;5!UBERON:0001638;1.73e-33;9!UBERON:0010260;1.73e-33;9!UBERON:0003920;1.73e-33;9!UBERON:0004582;1.73e-33;9!UBERON:0001473;1.50e-17;8!UBERON:0004536;1.50e-17;8!UBERON:0006558;1.50e-17;8!UBERON:0004638;3.30e-17;18!UBERON:0001986;3.30e-17;18!UBERON:0004852;3.30e-17;18!UBERON:0002465;2.94e-14;10!UBERON:0000487;3.13e-14;22!UBERON:0006914;1.28e-12;25!UBERON:0000490;1.79e-07;33!UBERON:0002049;3.71e-07;75!UBERON:0007798;3.71e-07;75!UBERON:0000055;7.50e-07;65 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002066,2.01e-59,5;UBERON:0001638,1.73e-33,9;UBERON:0010260,1.73e-33,9;UBERON:0003920,1.73e-33,9;UBERON:0004582,1.73e-33,9;UBERON:0001473,1.44e-17,8;UBERON:0004536,1.44e-17,8;UBERON:0006558,1.44e-17,8;UBERON:0004638,3.30e-17,18;UBERON:0001986,3.30e-17,18;UBERON:0004852,3.30e-17,18;UBERON:0002465,2.84e-14,10;UBERON:0000487,3.13e-14,22;UBERON:0006914,1.28e-12,25;UBERON:0000055,1.33e-12,68;UBERON:0002049,4.79e-11,78;UBERON:0007798,4.79e-11,78;UBERON:0004535,5.11e-08,109;UBERON:0001009,8.20e-08,112 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0.596287222100115,0,0.347140501607594,0.56530794192401,0,0.550236083880135,0.626984899610432,3.10100111003195,2.84613010149368,0.33472061276467,0,0,0,0,0,4.55428614248807,1.79623498100936,1.68917220724983,0,0,0.732806975721629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0,0,0,0,0,0,0,0.37223371266318,0.168776332241266,0,0,0,0,0.710019185033229,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0.925971025153221,0.761016608938393,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0.179060963239896,0,0,0,0,0.254094624222463,2.60279707715243,0,0.167516265334349,0,0,0,0,0,0,0,0.207970861530807,0,0,0.234282829985426,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340187410553031,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.247528499761764,0,0,0,0.096670718292122,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0.106824071127473,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0.296964680832639,0,0,0,0,0,0,0.996239941255349,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0.110579259931225,0,0,0,0,0.153900517007594,0,0,0,0.108647371922008,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0.428883182749851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0.20170506870352,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0.150962843566674,0.154348316215889,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0.0620747142958579,0.112131862580613,0,0.202117188958219,0,0,0,0,0,0,0.106727345877715,0,0.0898252021065869,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0.596287222100115,0,0.347140501607594,0.56530794192401,0,0.550236083880135,0.626984899610432,3.10100111003195,2.84613010149368,0.33472061276467,0,0,0,0,0,4.55428614248807,1.79623498100936,1.68917220724983,0,0,0.732806975721629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0,0,0,0,0,0,0,0.37223371266318,0.168776332241266,0,0,0,0,0.710019185033229,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0.925971025153221,0.761016608938393,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0.179060963239896,0,0,0,0,0.254094624222463,2.60279707715243,0,0.167516265334349,0,0,0,0,0,0,0,0.207970861530807,0,0,0.234282829985426,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340187410553031,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.247528499761764,0,0,0,0.096670718292122,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0.106824071127473,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0.296964680832639,0,0,0,0,0,0,0.996239941255349,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0.110579259931225,0,0,0,0,0.153900517007594,0,0,0,0.108647371922008,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0.428883182749851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0.20170506870352,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0.150962843566674,0.154348316215889,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0.0620747142958579,0.112131862580613,0,0.202117188958219,0,0,0,0,0,0,0.106727345877715,0,0.0898252021065869,0,0,0,0,0,0 | ||
|short_description=p@chr12:105962745..105962748,+ | |short_description=p@chr12:105962745..105962748,+ | ||
}} | }} |
Latest revision as of 04:24, 24 July 2015
Short description: | p@chr12:105962745..105962748, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:105962745..105962748, + |
Coexpression cluster: | C3225_Endothelial_Neural_Lymphatic_Aortic_aorta_Whole_ductus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of umbilical vein | 3.03e-98 | 3 |
vein endothelial cell | 1.05e-49 | 6 |
endothelial cell of vascular tree | 1.20e-34 | 24 |
endothelial cell | 2.54e-23 | 36 |
lymphangioblast | 4.86e-23 | 6 |
endothelial cell of lymphatic vessel | 4.86e-23 | 6 |
vascular lymphangioblast | 4.86e-23 | 6 |
meso-epithelial cell | 8.89e-19 | 45 |
blood vessel endothelial cell | 3.30e-17 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.30e-17 | 18 |
lining cell | 1.09e-14 | 58 |
barrier cell | 1.09e-14 | 58 |
mesodermal cell | 2.95e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
umbilical vein | 2.01e-59 | 5 |
vein | 1.73e-33 | 9 |
umbilical blood vessel | 1.73e-33 | 9 |
venous blood vessel | 1.73e-33 | 9 |
venous system | 1.73e-33 | 9 |
lymphatic vessel | 1.44e-17 | 8 |
lymph vasculature | 1.44e-17 | 8 |
lymphatic part of lymphoid system | 1.44e-17 | 8 |
blood vessel endothelium | 3.30e-17 | 18 |
endothelium | 3.30e-17 | 18 |
cardiovascular system endothelium | 3.30e-17 | 18 |
lymphoid system | 2.84e-14 | 10 |
simple squamous epithelium | 3.13e-14 | 22 |
squamous epithelium | 1.28e-12 | 25 |
vessel | 1.33e-12 | 68 |
vasculature | 4.79e-11 | 78 |
vascular system | 4.79e-11 | 78 |
cardiovascular system | 5.11e-08 | 109 |
circulatory system | 8.20e-08 | 112 |