FFCP PHASE1:Hg19::chr12:52642530..52642567,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:52642530..52642567,+ | |||
|coexpression_cluster_id=C689 | |||
|description=CAGE_peak_at_chr12:52642530..52642567,+ | |description=CAGE_peak_at_chr12:52642530..52642567,+ | ||
|id=chr12:52642530..52642567,+ | |id=chr12:52642530..52642567,+ | ||
|ontology_enrichment_celltype=CL:0000066!5.04e-37!254;CL:0000077!4.28e-11!19;CL:0000076!1.28e-10!62;CL:0000063!2.82e-10!578;CL:0002076!3.19e-10!43;CL:0002368!1.14e-09!13 | |ontology_enrichment_celltype=CL:0000066!5.04e-37!254;CL:0000077!4.28e-11!19;CL:0000076!1.28e-10!62;CL:0000063!2.82e-10!578;CL:0002076!3.19e-10!43;CL:0002368!1.14e-09!13 | ||
|ontology_enrichment_celltype_v019=CL:0000077;3.77e-19;19!CL:0002368;3.64e-09;13!CL:0002577;4.88e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.74e-28,253;CL:0000077,3.26e-19,19;CL:0002368,3.58e-09,13;CL:0000076,1.17e-08,63;CL:0002577,3.61e-08,3;CL:0002076,7.11e-08,42;CL:0000213,2.10e-07,58;CL:0000215,2.10e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0008947;7.34e-13;29 | |||
|ontology_enrichment_disease=DOID:305!2.20e-13!106;DOID:0050687!2.83e-09!143 | |ontology_enrichment_disease=DOID:305!2.20e-13!106;DOID:0050687!2.83e-09!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.69e-13,106;DOID:0050687,9.50e-09,143;DOID:162,9.92e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.13e-13!169;UBERON:0000925!4.13e-13!169;UBERON:0006595!4.13e-13!169;UBERON:0000065!4.65e-13!53;UBERON:0008947!5.03e-13!38;UBERON:0003258!5.03e-13!38;UBERON:0001737!2.19e-11!9;UBERON:0000077!2.03e-10!130;UBERON:0000072!1.50e-09!46;UBERON:0001004!3.17e-09!72;UBERON:0000464!8.64e-09!104;UBERON:0001048!1.00e-08!168;UBERON:0005153!4.56e-08!37;UBERON:0005631!6.86e-08!14;UBERON:0000158!6.86e-08!14;UBERON:0001041!8.35e-08!98;UBERON:0001007!9.29e-08!155;UBERON:0001555!9.29e-08!155;UBERON:0007026!9.29e-08!155;UBERON:0005911!1.05e-07!82;UBERON:0003124!1.09e-07!7;UBERON:0000466!2.54e-07!126;UBERON:0004921!6.03e-07!129;UBERON:0004185!6.03e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.69e-23;9!UBERON:0001557;6.69e-23;9!UBERON:0000065;3.53e-14;44!UBERON:0000072;3.52e-11;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.57e-23,9;UBERON:0000065,7.54e-15,54;UBERON:0008947,2.42e-14,38;UBERON:0003258,2.42e-14,38;UBERON:0001557,2.22e-12,19;UBERON:0004119,4.58e-12,160;UBERON:0000925,4.58e-12,160;UBERON:0006595,4.58e-12,160;UBERON:0000072,7.47e-11,47;UBERON:0001004,1.82e-09,74;UBERON:0001041,2.50e-07,87;UBERON:0001007,3.23e-07,145;UBERON:0001555,3.23e-07,145;UBERON:0007026,3.23e-07,145;UBERON:0004921,7.73e-07,118 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,1.0007329835313,0,0,0,0,0,3.44027511102112,23.7252397110625,2.18441372130172,1.84636884759917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.90361775633475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,0,2.02785126545153,0,0,0,0.886917589850256,0.966182642624386,0.0654895377488563,0,0.741568885568859,0,0,0,0,0,0,0,0,0.347140501607594,0.56530794192401,0.838998872419812,1.37559020970034,0,0,0,0,0.805658634218294,0,0,0.735326160691737,3.24056779152704,0,0,0,0,0,0.183201743930407,0,0,0.872188104285069,0.496971951695318,0.12663051166458,0,0.286836620748814,0.709336764396714,3.36406560085384,1.06748995729705,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51145489964407,0,0,0,0,1.54584324027377,0.18611685633159,0.337552664482532,0.194874010322397,0,0,0,0,0,0.169560592310488,0.57978255948989,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,1.8929088006375,2.86593973132773,2.41011029883482,2.86764329104224,4.57546832594053,1.18635309555548,2.42696354688296,2.35465758150415,1.15424147083917,0,0,0.4115740113314,0,0,0,0,0,0,1.88724591328378,0.878002283269004,0,0,0.185176890317059,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0.626909658919938,0.581267877027924,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0.904318131178758,0,4.99864955910285,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,2.70362119990049,0.713715955188647,0.315404830067869,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,1.21251028578504,1.66435439510497,1.81434175997808,0,0.460385919864187,0.280660094433074,0.128139149255701,0,0,1.48418066444991,0,0,0,0,0,0,4.41114234667227,1.84161977871793,0.34444334449382,0,0,0.902399225814824,0.308061348417659,0,0,0.211103257785751,0,0,0.215915916102139,0,0,0,1.27438136522519,0.831076008928724,0,0,0,0,4.92021968549559,2.60302715731442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.97512847649761,1.53752053892085,1.78657797492418,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0.329294892959902,0,0,0.384888450902048,1.34060455107157,2.17781969722645,0.282431402330337,0.43050537267123,5.05414427002877,1.33029046061003,0.229723400206959,0,0,0,0,0,0,0,0,0,0,2.20536194382929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0.111443384277478,0,0.23874448473769,0.296964680832639,0,0,0,0,0,2.53350489753592,0.19924798825107,0,0,0,0,0,1.43789361835723,1.43216939740487,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,2.03402920234213,1.89110145414349,0,0,0,0,0,0,0,0,0,0.435753854075961,0,0,0,0,0.179515288819544,0.217294743844016,0.638002319463839,0.549585560411174,7.46248686426089,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,0,0,0,0.123563938946503,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,1.19472429772959,1.13843818411917,0,0.347119476670262,0,0.870592065804026,0.17472666824203,0,1.06431964417994,0.65780385377567,0.739039113478883,0,0,0,0,0,0,21.3151007180935,0.160317640503067,0,2.99714414373195,0.144090417154106,0,0,0.576219191952599,0,1.64985824231757,0,0,0,0,0,0,0,0.429765441419957,0.262887354279314,0,0,0,0.998395002494955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342173675768659,0.704815022316672,0.106787412567695,0,2.48543433208317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0.310525913752519,0,0,0,0.150257608997218,0.761610424337591,0.813741466409323,0,0.966695013382396,0,0,0,0,0,0,0,1.07220795687463,1.56596575179127,16.3228266368836,4.63044948647668,7.09736443068756,6.98446480217801,1.85280868296583,5.04353314031026,0.176689145945881,12.7323265258804,2.53413660979609,0,0,3.03859956177382,0,0,0,0,0,1.96618327002975,1.05656061679314,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.77261598760812,0,0,0,0,0,0.781514011233092,0,1.14640342257068,0.739280431085226,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,0.177404740325278,0,0,0,0,1.18193840883968,2.33585943973345,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0.828864656652147,0,0,0,0,0,0.846774100381858,2.52017555398455,0,0,0.894843454382338,0.294450700845729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0.0999411559249289,0.178553938605658,0,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26721740526556,0.0918948995348449,0,0,0,0,0,0,0.476128862927481,0,0,4.59740636580515,0.381882949668989,2.42540626749863,0.435433495793923,0,0,0.0717222053926763,0,0.651226148887796,0.533636729388577,0,0.0898252021065869,2.34640942403454,0,0,0,0,0 | |phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,1.0007329835313,0,0,0,0,0,3.44027511102112,23.7252397110625,2.18441372130172,1.84636884759917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.90361775633475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,0,2.02785126545153,0,0,0,0.886917589850256,0.966182642624386,0.0654895377488563,0,0.741568885568859,0,0,0,0,0,0,0,0,0.347140501607594,0.56530794192401,0.838998872419812,1.37559020970034,0,0,0,0,0.805658634218294,0,0,0.735326160691737,3.24056779152704,0,0,0,0,0,0.183201743930407,0,0,0.872188104285069,0.496971951695318,0.12663051166458,0,0.286836620748814,0.709336764396714,3.36406560085384,1.06748995729705,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51145489964407,0,0,0,0,1.54584324027377,0.18611685633159,0.337552664482532,0.194874010322397,0,0,0,0,0,0.169560592310488,0.57978255948989,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,1.8929088006375,2.86593973132773,2.41011029883482,2.86764329104224,4.57546832594053,1.18635309555548,2.42696354688296,2.35465758150415,1.15424147083917,0,0,0.4115740113314,0,0,0,0,0,0,1.88724591328378,0.878002283269004,0,0,0.185176890317059,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0.626909658919938,0.581267877027924,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0.904318131178758,0,4.99864955910285,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,2.70362119990049,0.713715955188647,0.315404830067869,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,1.21251028578504,1.66435439510497,1.81434175997808,0,0.460385919864187,0.280660094433074,0.128139149255701,0,0,1.48418066444991,0,0,0,0,0,0,4.41114234667227,1.84161977871793,0.34444334449382,0,0,0.902399225814824,0.308061348417659,0,0,0.211103257785751,0,0,0.215915916102139,0,0,0,1.27438136522519,0.831076008928724,0,0,0,0,4.92021968549559,2.60302715731442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.97512847649761,1.53752053892085,1.78657797492418,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0.329294892959902,0,0,0.384888450902048,1.34060455107157,2.17781969722645,0.282431402330337,0.43050537267123,5.05414427002877,1.33029046061003,0.229723400206959,0,0,0,0,0,0,0,0,0,0,2.20536194382929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0.111443384277478,0,0.23874448473769,0.296964680832639,0,0,0,0,0,2.53350489753592,0.19924798825107,0,0,0,0,0,1.43789361835723,1.43216939740487,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,2.03402920234213,1.89110145414349,0,0,0,0,0,0,0,0,0,0.435753854075961,0,0,0,0,0.179515288819544,0.217294743844016,0.638002319463839,0.549585560411174,7.46248686426089,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,0,0,0,0.123563938946503,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,1.19472429772959,1.13843818411917,0,0.347119476670262,0,0.870592065804026,0.17472666824203,0,1.06431964417994,0.65780385377567,0.739039113478883,0,0,0,0,0,0,21.3151007180935,0.160317640503067,0,2.99714414373195,0.144090417154106,0,0,0.576219191952599,0,1.64985824231757,0,0,0,0,0,0,0,0.429765441419957,0.262887354279314,0,0,0,0.998395002494955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342173675768659,0.704815022316672,0.106787412567695,0,2.48543433208317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0.310525913752519,0,0,0,0.150257608997218,0.761610424337591,0.813741466409323,0,0.966695013382396,0,0,0,0,0,0,0,1.07220795687463,1.56596575179127,16.3228266368836,4.63044948647668,7.09736443068756,6.98446480217801,1.85280868296583,5.04353314031026,0.176689145945881,12.7323265258804,2.53413660979609,0,0,3.03859956177382,0,0,0,0,0,1.96618327002975,1.05656061679314,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.77261598760812,0,0,0,0,0,0.781514011233092,0,1.14640342257068,0.739280431085226,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,0.177404740325278,0,0,0,0,1.18193840883968,2.33585943973345,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0.828864656652147,0,0,0,0,0,0.846774100381858,2.52017555398455,0,0,0.894843454382338,0.294450700845729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0.0999411559249289,0.178553938605658,0,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26721740526556,0.0918948995348449,0,0,0,0,0,0,0.476128862927481,0,0,4.59740636580515,0.381882949668989,2.42540626749863,0.435433495793923,0,0,0.0717222053926763,0,0.651226148887796,0.533636729388577,0,0.0898252021065869,2.34640942403454,0,0,0,0,0 | ||
|short_description=p@chr12:52642530..52642567,+ | |short_description=p@chr12:52642530..52642567,+ | ||
}} | }} |
Latest revision as of 09:30, 24 July 2015
Short description: | p@chr12:52642530..52642567, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52642530..52642567, + |
Coexpression cluster: | C689_Alveolar_mesothelioma_Retinal_Mesothelial_Prostate_bile_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.74e-28 | 253 |
mesothelial cell | 3.26e-19 | 19 |
respiratory epithelial cell | 3.58e-09 | 13 |
squamous epithelial cell | 1.17e-08 | 63 |
placental epithelial cell | 3.61e-08 | 3 |
endo-epithelial cell | 7.11e-08 | 42 |
lining cell | 2.10e-07 | 58 |
barrier cell | 2.10e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
larynx | 5.57e-23 | 9 |
respiratory tract | 7.54e-15 | 54 |
respiratory primordium | 2.42e-14 | 38 |
endoderm of foregut | 2.42e-14 | 38 |
upper respiratory tract | 2.22e-12 | 19 |
endoderm-derived structure | 4.58e-12 | 160 |
endoderm | 4.58e-12 | 160 |
presumptive endoderm | 4.58e-12 | 160 |
segment of respiratory tract | 7.47e-11 | 47 |
respiratory system | 1.82e-09 | 74 |
foregut | 2.50e-07 | 87 |
digestive system | 3.23e-07 | 145 |
digestive tract | 3.23e-07 | 145 |
primitive gut | 3.23e-07 | 145 |
subdivision of digestive tract | 7.73e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.69e-13 | 106 |
cell type cancer | 9.50e-09 | 143 |
cancer | 9.92e-07 | 235 |