FFCP PHASE1:Hg19::chr16:3064994..3065011,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:3064994..3065011,- | |||
|coexpression_cluster_id=C130 | |coexpression_cluster_id=C130 | ||
|description=CAGE_peak_at_chr16:3064994..3065011,- | |description=CAGE_peak_at_chr16:3064994..3065011,- | ||
|id=chr16:3064994..3065011,- | |id=chr16:3064994..3065011,- | ||
|ontology_enrichment_celltype=CL:0000039;4.90e-47;7!CL:0000586;4.90e-47;7!CL:0002322;3.13e-35;5!CL:1000507;2.86e-32;10!CL:1000494;2.86e-32;10!CL:1000449;5.49e-28;15!CL:1000497;1.42e-24;17!CL:0002518;1.42e-24;17!CL:0002681;2.78e-14;12!CL:0002584;2.78e-14;12!CL:0002321;1.18e-11;15!CL:0000540;1.46e-11;6!CL:0000404;1.46e-11;6!CL:0000148;6.38e-07;10 | |ontology_enrichment_celltype=CL:0000039!1.41e-24!7;CL:0000586!1.41e-24!7;CL:0002322!1.28e-18!5;CL:1000507!1.36e-17!12;CL:1000494!1.36e-17!12;CL:1000449!1.99e-16!16;CL:1000497!2.11e-14!18;CL:0002518!2.11e-14!18;CL:0000540!3.61e-10!6;CL:0000031!3.61e-10!6;CL:0000404!3.61e-10!6;CL:0002681!2.44e-09!13;CL:0002584!2.44e-09!13;CL:0002319!1.25e-08!25;CL:0000047!1.30e-07!8 | ||
| | |ontology_enrichment_celltype_v019=CL:0000039;4.90e-47;7!CL:0000586;4.90e-47;7!CL:0002322;3.13e-35;5!CL:1000507;2.86e-32;10!CL:1000494;2.86e-32;10!CL:1000449;5.49e-28;15!CL:1000497;1.42e-24;17!CL:0002518;1.42e-24;17!CL:0002681;2.78e-14;12!CL:0002584;2.78e-14;12!CL:0002321;1.18e-11;15!CL:0000540;1.46e-11;6!CL:0000404;1.46e-11;6!CL:0000148;6.38e-07;10 | ||
|ontology_enrichment_disease=DOID:3095;8.81e-24;22!DOID:2994;8.81e-24;22!DOID:1799;3.97e-08;1!DOID:10165;3.97e-08;1!DOID:1798;3.97e-08;1!DOID:178;6.03e-08;1!DOID:326;6.03e-08;1!DOID:3978;6.03e-08;1!DOID:3394;6.03e-08;1!DOID:5844;6.03e-08;1 | |ontology_enrichment_celltype_v019_2=CL:0000039,4.27e-47,7;CL:0000586,4.27e-47,7;CL:0002322,2.92e-35,5;CL:1000507,4.00e-32,10;CL:1000494,4.00e-32,10;CL:1000449,7.07e-28,15;CL:1000497,1.78e-24,17;CL:0002518,1.78e-24,17;CL:0002681,3.29e-14,12;CL:0002584,3.29e-14,12;CL:0000540,1.46e-11,6;CL:0000031,1.46e-11,6;CL:0000404,1.46e-11,6;CL:0000047,8.70e-09,8;CL:0000148,6.31e-07,10;CL:0000541,6.31e-07,10 | ||
|ontology_enrichment_uberon=UBERON:0004211;2.86e-32;10!UBERON:0009773;2.86e-32;10!UBERON:0001231;2.86e-32;10!UBERON:0004810;2.86e-32;10!UBERON:0006555;5.49e-28;15!UBERON:0004819;5.49e-28;15!UBERON:0001285;5.49e-28;15!UBERON:0007684;5.49e-28;15!UBERON:0002113;4.26e-17;24!UBERON:0011143;4.26e-17;24!UBERON:0001225;2.78e-14;12!UBERON:0008987;2.78e-14;12!UBERON:0000473;5.55e-14;8!UBERON:0000489;5.81e-14;29!UBERON:0006554;1.85e-13;30!UBERON:0001008;1.85e-13;30!UBERON:0001851;2.16e-11;15!UBERON:0000353;2.16e-11;15!UBERON:0003135;3.25e-10;11!UBERON:0000991;4.42e-08;21 | |ontology_enrichment_development_v019=UBERON:0009117;3.56e-17;10!UBERON:0005564;3.56e-17;10!CL:0000031;1.46e-11;6 | ||
|ontology_enrichment_disease=DOID:3095!2.74e-14!22;DOID:2994!2.74e-14!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;8.81e-24;22!DOID:2994;8.81e-24;22!DOID:1799;3.97e-08;1!DOID:10165;3.97e-08;1!DOID:1798;3.97e-08;1!DOID:178;6.03e-08;1!DOID:326;6.03e-08;1!DOID:3978;6.03e-08;1!DOID:3394;6.03e-08;1!DOID:5844;6.03e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,7.68e-24,22;DOID:2994,7.68e-24,22;DOID:1799,3.57e-08,1;DOID:10165,3.57e-08,1;DOID:1798,3.57e-08,1;DOID:178,6.24e-08,1;DOID:326,6.24e-08,1;DOID:3978,6.24e-08,1;DOID:3394,6.24e-08,1;DOID:5844,6.24e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0009773!1.36e-17!12;UBERON:0001231!1.36e-17!12;UBERON:0004810!1.36e-17!12;UBERON:0004211!1.99e-16!16;UBERON:0001285!1.99e-16!16;UBERON:0007684!1.99e-16!16;UBERON:0003220!1.99e-16!16;UBERON:0004208!1.99e-16!16;UBERON:0006555!2.35e-15!17;UBERON:0005103!2.35e-15!17;UBERON:0000083!2.35e-15!17;UBERON:0009201!2.35e-15!17;UBERON:0004819!2.35e-15!17;UBERON:0006553!2.35e-15!17;UBERON:0003074!2.35e-15!17;UBERON:0003060!2.35e-15!17;UBERON:0000080!2.11e-14!18;UBERON:0002120!2.11e-14!18;UBERON:0004875!2.11e-14!18;UBERON:0005721!2.11e-14!18;UBERON:0005754!2.11e-14!18;UBERON:0007297!2.11e-14!18;UBERON:0002113!3.18e-13!27;UBERON:0003918!3.18e-13!27;UBERON:0005095!3.18e-13!27;UBERON:0007687!3.18e-13!27;UBERON:0004876!8.73e-13!20;UBERON:0003887!4.30e-12!21;UBERON:0003886!6.00e-12!63;UBERON:0000058!1.56e-11!26;UBERON:0000473!6.40e-11!8;UBERON:0000489!8.62e-11!32;UBERON:0002553!2.40e-10!70;UBERON:0001225!2.44e-09!13;UBERON:0008987!2.44e-09!13;UBERON:0005172!7.76e-09!55;UBERON:0005173!7.76e-09!55;UBERON:0006554!1.20e-08!44;UBERON:0001008!2.13e-08!45;UBERON:0003135!7.69e-08!11;UBERON:0000466!9.25e-08!126;UBERON:0002417!1.13e-07!61;UBERON:0000916!1.13e-07!61;UBERON:0003064!1.55e-07!37;UBERON:0001851!1.89e-07!16;UBERON:0000353!5.71e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.86e-32;10!UBERON:0009773;2.86e-32;10!UBERON:0001231;2.86e-32;10!UBERON:0004810;2.86e-32;10!UBERON:0006555;5.49e-28;15!UBERON:0004819;5.49e-28;15!UBERON:0001285;5.49e-28;15!UBERON:0007684;5.49e-28;15!UBERON:0002113;4.26e-17;24!UBERON:0011143;4.26e-17;24!UBERON:0001225;2.78e-14;12!UBERON:0008987;2.78e-14;12!UBERON:0000473;5.55e-14;8!UBERON:0000489;5.81e-14;29!UBERON:0006554;1.85e-13;30!UBERON:0001008;1.85e-13;30!UBERON:0001851;2.16e-11;15!UBERON:0000353;2.16e-11;15!UBERON:0003135;3.25e-10;11!UBERON:0000991;4.42e-08;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,4.00e-32,10;UBERON:0004211,7.07e-28,15;UBERON:0009773,7.07e-28,15;UBERON:0001231,7.07e-28,15;UBERON:0001285,7.07e-28,15;UBERON:0007684,7.07e-28,15;UBERON:0004208,7.07e-28,15;UBERON:0006555,4.52e-26,16;UBERON:0004819,4.52e-26,16;UBERON:0002113,1.23e-15,26;UBERON:0003918,1.23e-15,26;UBERON:0011143,1.23e-15,26;UBERON:0005095,1.23e-15,26;UBERON:0007687,1.23e-15,26;UBERON:0001225,3.29e-14,12;UBERON:0008987,3.29e-14,12;UBERON:0000473,5.74e-14,8;UBERON:0000489,6.12e-13,31;UBERON:0001851,2.47e-11,15;UBERON:0000353,2.47e-11,15;UBERON:0003135,3.33e-10,11;UBERON:0006554,3.66e-08,47;UBERON:0000991,4.45e-08,21;UBERON:0009196,4.45e-08,21;UBERON:0009117,4.45e-08,21;UBERON:0005564,4.45e-08,21;UBERON:0001008,5.71e-08,48;UBERON:0004176,1.06e-07,22;UBERON:0003886,4.22e-07,54;UBERON:0005172,5.79e-07,54;UBERON:0005173,5.79e-07,54 | |||
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| ||
|short_description=p@chr16:3064994..3065011,- | |short_description=p@chr16:3064994..3065011,- | ||
}} | }} |
Latest revision as of 08:13, 25 July 2015
Short description: | p@chr16:3064994..3065011, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:3064994..3065011, - |
Coexpression cluster: | C130_iPS_HES3GFP_H9_teratocarcinoma_testicular_colon_Alveolar |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 4.27e-47 | 7 |
germ cell | 4.27e-47 | 7 |
embryonic stem cell | 2.92e-35 | 5 |
kidney tubule cell | 4.00e-32 | 10 |
nephron tubule epithelial cell | 4.00e-32 | 10 |
epithelial cell of nephron | 7.07e-28 | 15 |
kidney cell | 1.78e-24 | 17 |
kidney epithelial cell | 1.78e-24 | 17 |
kidney cortical cell | 3.29e-14 | 12 |
renal cortical epithelial cell | 3.29e-14 | 12 |
neuron | 1.46e-11 | 6 |
neuroblast | 1.46e-11 | 6 |
electrically signaling cell | 1.46e-11 | 6 |
neuronal stem cell | 8.70e-09 | 8 |
melanocyte | 6.31e-07 | 10 |
melanoblast | 6.31e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 4.00e-32 | 10 |
nephron epithelium | 7.07e-28 | 15 |
renal tubule | 7.07e-28 | 15 |
nephron tubule | 7.07e-28 | 15 |
nephron | 7.07e-28 | 15 |
uriniferous tubule | 7.07e-28 | 15 |
nephrogenic mesenchyme | 7.07e-28 | 15 |
excretory tube | 4.52e-26 | 16 |
kidney epithelium | 4.52e-26 | 16 |
kidney | 1.23e-15 | 26 |
kidney mesenchyme | 1.23e-15 | 26 |
upper urinary tract | 1.23e-15 | 26 |
kidney rudiment | 1.23e-15 | 26 |
kidney field | 1.23e-15 | 26 |
cortex of kidney | 3.29e-14 | 12 |
renal parenchyma | 3.29e-14 | 12 |
testis | 5.74e-14 | 8 |
cavitated compound organ | 6.12e-13 | 31 |
cortex | 2.47e-11 | 15 |
parenchyma | 2.47e-11 | 15 |
male reproductive organ | 3.33e-10 | 11 |
urinary system structure | 3.66e-08 | 47 |
gonad | 4.45e-08 | 21 |
indifferent external genitalia | 4.45e-08 | 21 |
indifferent gonad | 4.45e-08 | 21 |
gonad primordium | 4.45e-08 | 21 |
renal system | 5.71e-08 | 48 |
external genitalia | 1.06e-07 | 22 |
body cavity precursor | 4.22e-07 | 54 |
abdomen element | 5.79e-07 | 54 |
abdominal segment element | 5.79e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 7.68e-24 | 22 |
germ cell cancer | 7.68e-24 | 22 |
islet cell tumor | 3.57e-08 | 1 |
endocrine pancreas cancer | 3.57e-08 | 1 |
pancreatic endocrine carcinoma | 3.57e-08 | 1 |
vascular disease | 6.24e-08 | 1 |
ischemia | 6.24e-08 | 1 |
extrinsic cardiomyopathy | 6.24e-08 | 1 |
myocardial ischemia | 6.24e-08 | 1 |
myocardial infarction | 6.24e-08 | 1 |