FFCP PHASE1:Hg19::chr16:89971162..89971177,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr16:89971162..89971177,+
|short_description=p@chr16:89971162..89971177,+
|description=CAGE_peak_at_chr16:89971162..89971177,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr16:89971162..89971177,+ | |||
|coexpression_cluster_id=C159 | |||
|description=CAGE_peak_at_chr16:89971162..89971177,+ | |||
|id=chr16:89971162..89971177,+ | |||
|ontology_enrichment_celltype=CL:0002202!4.78e-10!9;CL:0002632!4.78e-10!9;CL:0002536!1.50e-08!2;CL:0000223!1.64e-07!59;CL:0002368!7.59e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0000322;1.67e-16;3!CL:0000082;4.06e-10;19!CL:0000039;8.49e-08;7!CL:0000586;8.49e-08;7!CL:0002536;4.55e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.88e-16,3;CL:0000082,4.52e-10,19;CL:0000039,8.64e-08,7;CL:0000586,8.64e-08,7;CL:0002536,5.60e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0003124;2.78e-13;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1799;1.61e-13;1!DOID:10165;1.61e-13;1!DOID:1798;1.61e-13;1!DOID:1325;9.72e-08;7!DOID:3904;9.72e-08;7!DOID:1324;1.22e-07;15!DOID:3910;3.28e-07;2!DOID:0050615;3.42e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,1.61e-13,1;DOID:10165,1.61e-13,1;DOID:1798,1.61e-13,1;DOID:1325,1.02e-07,7;DOID:3904,1.02e-07,7;DOID:1324,1.34e-07,15;DOID:3910,3.48e-07,2;DOID:0050615,3.73e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0005631!5.01e-16!14;UBERON:0000158!5.01e-16!14;UBERON:0003124!1.96e-13!7;UBERON:0000077!4.02e-11!130;UBERON:0001987!3.21e-09!4;UBERON:0004340!3.21e-09!4;UBERON:0007196!8.51e-09!14;UBERON:0001558!8.51e-09!14;UBERON:0004119!9.03e-09!169;UBERON:0000925!9.03e-09!169;UBERON:0006595!9.03e-09!169;UBERON:0000478!9.28e-09!24;UBERON:0004921!5.66e-08!129;UBERON:0004185!5.66e-08!129;UBERON:0004923!7.16e-08!57;UBERON:0000464!7.26e-08!104;UBERON:0001041!1.18e-07!98;UBERON:0000466!1.76e-07!126;UBERON:0001007!2.46e-07!155;UBERON:0001555!2.46e-07!155;UBERON:0007026!2.46e-07!155;UBERON:0000072!2.96e-07!46;UBERON:0005178!3.62e-07!34;UBERON:0002224!3.62e-07!34;UBERON:0005181!6.45e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0004821;1.67e-16;3!UBERON:0007499;1.67e-16;3!UBERON:0003215;1.67e-16;3!UBERON:0010368;1.67e-16;3!UBERON:0009911;1.67e-16;3!UBERON:0002299;1.67e-16;3!UBERON:0006524;1.67e-16;3!UBERON:0008874;1.67e-16;3!UBERON:0002169;1.67e-16;3!UBERON:0004894;1.67e-16;3!UBERON:0001987;1.10e-12;4!UBERON:0009856;1.27e-12;4!UBERON:0004802;4.06e-10;19!UBERON:0000115;4.06e-10;19!UBERON:0002048;9.11e-09;22!UBERON:0004807;9.11e-09;22!UBERON:0000117;9.11e-09;22!UBERON:0000171;9.11e-09;22!UBERON:0000170;9.11e-09;22!UBERON:0000478;4.91e-08;24!UBERON:0004903;3.28e-07;2!UBERON:0002173;3.28e-07;2!UBERON:0002186;3.28e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004821,1.88e-16,3;UBERON:0003215,1.88e-16,3;UBERON:0010368,1.88e-16,3;UBERON:0009911,1.88e-16,3;UBERON:0002299,1.88e-16,3;UBERON:0006524,1.88e-16,3;UBERON:0008874,1.88e-16,3;UBERON:0002169,1.88e-16,3;UBERON:0004894,1.88e-16,3;UBERON:0003124,8.74e-16,7;UBERON:0005631,1.27e-13,14;UBERON:0000158,1.27e-13,14;UBERON:0001987,9.20e-13,4;UBERON:0004340,9.20e-13,4;UBERON:0004802,4.52e-10,19;UBERON:0000115,4.52e-10,19;UBERON:0002048,1.00e-08,22;UBERON:0000117,1.00e-08,22;UBERON:0000171,1.00e-08,22;UBERON:0000170,1.00e-08,22;UBERON:0005597,1.00e-08,22;UBERON:0000118,1.00e-08,22;UBERON:0000478,4.86e-08,24;UBERON:0004903,3.48e-07,2;UBERON:0002173,3.48e-07,2;UBERON:0002186,3.48e-07,2;UBERON:0004807,6.79e-07,28 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,1.47440361900905,9.76921635161399,0.873765488520689,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0.590129310341499,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.614942192715568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.47298427954533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0.670302275535787,0,1.7887322147588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61119057208048,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.455173793141999,2.2882828526349,9.45550727071745,0,0,0,0,0,0,0,0,0,0,0,0,0,29.9733075704478,0.807818799687949,6.7361370591645,2.87101043758728,0,0.533034776018635,0,0,0,0,0,0.167821586975843,0,0,0,0,0.424059214301822,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56203764501618,0,0,0,0,0,0,0,0.678923115418936,0,0,0,0,0,0.586654148204409,0,0,0,0,0,0,0,0,1.41416420770077,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40963004463334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0.106691729694141,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,30.9049899488078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.83008250252319,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0.535928260312357,0,0.103432995861895,0,0.23806443146374,0,0,0.112131862580613,0,0,0.217716747896961,0.684466602170562,0.0673520530145875,0.358611026963382,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr16:89971162..89971177,+ | |||
}} | }} |
Latest revision as of 13:33, 25 July 2015
Short description: | p@chr16:89971162..89971177, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:89971162..89971177, + |
Coexpression cluster: | C159_choriocarcinoma_pancreatic_placenta_chorionic_testicular_bronchioalveolar_seminal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.88e-16 | 3 |
epithelial cell of lung | 4.52e-10 | 19 |
germ line cell | 8.64e-08 | 7 |
germ cell | 8.64e-08 | 7 |
amniotic epithelial cell | 5.60e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
pulmonary alveolus epithelium | 1.88e-16 | 3 |
alveolus | 1.88e-16 | 3 |
pulmonary lobule | 1.88e-16 | 3 |
lobule | 1.88e-16 | 3 |
alveolus of lung | 1.88e-16 | 3 |
alveolar system | 1.88e-16 | 3 |
pulmonary acinus | 1.88e-16 | 3 |
alveolar sac | 1.88e-16 | 3 |
alveolar wall | 1.88e-16 | 3 |
chorion | 8.74e-16 | 7 |
extraembryonic membrane | 1.27e-13 | 14 |
membranous layer | 1.27e-13 | 14 |
placenta | 9.20e-13 | 4 |
allantois | 9.20e-13 | 4 |
respiratory tract epithelium | 4.52e-10 | 19 |
lung epithelium | 4.52e-10 | 19 |
lung | 1.00e-08 | 22 |
respiratory tube | 1.00e-08 | 22 |
respiration organ | 1.00e-08 | 22 |
pair of lungs | 1.00e-08 | 22 |
lung primordium | 1.00e-08 | 22 |
lung bud | 1.00e-08 | 22 |
extraembryonic structure | 4.86e-08 | 24 |
bronchoalveolar duct junction | 3.48e-07 | 2 |
alveolar duct | 3.48e-07 | 2 |
bronchiole | 3.48e-07 | 2 |
respiratory system epithelium | 6.79e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 1.61e-13 | 1 |
endocrine pancreas cancer | 1.61e-13 | 1 |
pancreatic endocrine carcinoma | 1.61e-13 | 1 |
bronchus cancer | 1.02e-07 | 7 |
bronchogenic carcinoma | 1.02e-07 | 7 |
lung cancer | 1.34e-07 | 15 |
lung adenocarcinoma | 3.48e-07 | 2 |
respiratory system cancer | 3.73e-07 | 16 |