FFCP PHASE1:Hg19::chr17:4851434..4851461,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:4851434..4851461,- to FFCP PHASE1:Hg19::chr17:4851434..4851461,-: NSchange) |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr17:4851434..4851461,- | |||
|description=CAGE_peak_at_chr17:4851434..4851461,- | |||
|id=chr17:4851434..4851461,- | |||
|ontology_enrichment_celltype=CL:0000192!3.70e-09!42;CL:0000514!3.70e-09!42;CL:0000359!9.54e-08!32;CL:0000548!3.56e-07!679;CL:0000004!3.56e-07!679;CL:0000255!3.56e-07!679 | |||
|ontology_enrichment_celltype_v019=CL:0000359;6.18e-12;32!CL:0000192;6.25e-10;43!CL:0002537;2.82e-09;5!CL:0002594;6.44e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,1.49e-13,43;CL:0000514,1.49e-13,43;CL:0000359,6.07e-13,32;CL:0000680,8.85e-12,58;CL:0000056,8.85e-12,58;CL:0000355,8.85e-12,58;CL:0000187,1.83e-11,55;CL:0000393,1.00e-09,61;CL:0000211,1.00e-09,61;CL:0002537,6.07e-09,5;CL:0002594,2.09e-08,4;CL:0000222,5.79e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000514;6.25e-10;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;3.64e-07;3!DOID:127;3.64e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,2.74e-07,3;DOID:127,2.74e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0004535!1.81e-09!110;UBERON:0001009!5.58e-09!113;UBERON:0000926!9.20e-08!448;UBERON:0004120!9.20e-08!448;UBERON:0006603!9.20e-08!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.82e-11;15!UBERON:0000179;8.82e-11;15!UBERON:0000463;8.82e-11;15!UBERON:0000305;5.49e-09;7!UBERON:0001310;6.44e-08;4!UBERON:0000478;5.06e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.53e-11,83;UBERON:0000178,4.79e-11,15;UBERON:0000179,4.79e-11,15;UBERON:0000463,4.79e-11,15;UBERON:0007524,5.63e-11,73;UBERON:0001134,1.35e-10,62;UBERON:0002036,1.35e-10,62;UBERON:0003082,1.35e-10,62;UBERON:0002329,2.07e-10,71;UBERON:0003059,2.07e-10,71;UBERON:0007282,2.07e-10,71;UBERON:0004290,2.07e-10,71;UBERON:0009618,2.07e-10,71;UBERON:0003077,3.61e-10,72;UBERON:0007285,3.61e-10,72;UBERON:0002385,4.61e-10,64;UBERON:0001015,4.61e-10,64;UBERON:0000383,4.61e-10,64;UBERON:0004871,5.38e-10,8;UBERON:0007503,7.70e-10,78;UBERON:0000305,1.68e-08,7;UBERON:0001310,2.09e-08,4;UBERON:0004535,5.59e-08,109;UBERON:0001009,1.47e-07,112;UBERON:0003104,3.12e-07,160;UBERON:0009142,3.12e-07,160;UBERON:0005256,3.16e-07,122;UBERON:0005631,3.37e-07,14;UBERON:0000158,3.37e-07,14;UBERON:0000926,7.19e-07,315;UBERON:0004120,7.19e-07,315;UBERON:0006603,7.19e-07,315 | |||
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| ||
|short_description=p@chr17:4851434..4851461,- | |||
}} | }} |
Latest revision as of 18:42, 25 July 2015
Short description: | p@chr17:4851434..4851461, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:4851434..4851461, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 1.49e-13 | 43 |
smooth muscle myoblast | 1.49e-13 | 43 |
vascular associated smooth muscle cell | 6.07e-13 | 32 |
muscle precursor cell | 8.85e-12 | 58 |
myoblast | 8.85e-12 | 58 |
multi-potent skeletal muscle stem cell | 8.85e-12 | 58 |
muscle cell | 1.83e-11 | 55 |
electrically responsive cell | 1.00e-09 | 61 |
electrically active cell | 1.00e-09 | 61 |
amnion mesenchymal stem cell | 6.07e-09 | 5 |
smooth muscle cell of the umbilical artery | 2.09e-08 | 4 |
mesodermal cell | 5.79e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 1.53e-11 | 83 |
blood | 4.79e-11 | 15 |
haemolymphatic fluid | 4.79e-11 | 15 |
organism substance | 4.79e-11 | 15 |
dense mesenchyme tissue | 5.63e-11 | 73 |
skeletal muscle tissue | 1.35e-10 | 62 |
striated muscle tissue | 1.35e-10 | 62 |
myotome | 1.35e-10 | 62 |
somite | 2.07e-10 | 71 |
presomitic mesoderm | 2.07e-10 | 71 |
presumptive segmental plate | 2.07e-10 | 71 |
dermomyotome | 2.07e-10 | 71 |
trunk paraxial mesoderm | 2.07e-10 | 71 |
paraxial mesoderm | 3.61e-10 | 72 |
presumptive paraxial mesoderm | 3.61e-10 | 72 |
muscle tissue | 4.61e-10 | 64 |
musculature | 4.61e-10 | 64 |
musculature of body | 4.61e-10 | 64 |
somatic layer of lateral plate mesoderm | 5.38e-10 | 8 |
epithelial vesicle | 7.70e-10 | 78 |
amnion | 1.68e-08 | 7 |
umbilical artery | 2.09e-08 | 4 |
cardiovascular system | 5.59e-08 | 109 |
circulatory system | 1.47e-07 | 112 |
mesenchyme | 3.12e-07 | 160 |
entire embryonic mesenchyme | 3.12e-07 | 160 |
trunk mesenchyme | 3.16e-07 | 122 |
extraembryonic membrane | 3.37e-07 | 14 |
membranous layer | 3.37e-07 | 14 |
mesoderm | 7.19e-07 | 315 |
mesoderm-derived structure | 7.19e-07 | 315 |
presumptive mesoderm | 7.19e-07 | 315 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 2.74e-07 | 3 |
leiomyoma | 2.74e-07 | 3 |