FFCP PHASE1:Hg19::chr18:72618246..72618294,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr18:72618246..72618294,- | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_at_chr18:72618246..72618294,- | |||
|id=chr18:72618246..72618294,- | |||
|ontology_enrichment_celltype=CL:0002195!6.62e-13!2;CL:0002571!6.62e-13!2;CL:0002127!2.36e-07!1;CL:0000914!2.36e-07!1;CL:0000911!2.36e-07!1;CL:0000814!2.36e-07!1;CL:0002042!2.36e-07!1;CL:0002039!2.36e-07!1;CL:0002040!2.36e-07!1;CL:0002041!2.36e-07!1;CL:0002553!2.99e-07!1;CL:0000167!8.49e-07!1;CL:0000164!8.49e-07!1;CL:0000502!8.49e-07!1;CL:0000172!8.49e-07!1;CL:0000173!8.49e-07!1;CL:0002351!8.49e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0002195;7.72e-66;2!CL:0002571;7.72e-66;2!CL:0002127;3.61e-34;1!CL:0000911;3.61e-34;1!CL:0000814;3.61e-34;1!CL:0002537;1.59e-27;5!CL:0000349;1.94e-16;19!CL:0002541;2.89e-12;3!CL:0000134;4.08e-11;55!CL:0000048;8.76e-11;58!CL:0000723;1.07e-09;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0002195,1.08e-65,2;CL:0002571,1.08e-65,2;CL:0002127,3.61e-34,1;CL:0000914,3.61e-34,1;CL:0000911,3.61e-34,1;CL:0000814,3.61e-34,1;CL:0002042,3.61e-34,1;CL:0002039,3.61e-34,1;CL:0002040,3.61e-34,1;CL:0002041,3.61e-34,1;CL:0002537,1.59e-27,5;CL:0000893,7.67e-18,2;CL:0002489,7.67e-18,2;CL:0000809,7.67e-18,2;CL:0000808,7.67e-18,2;CL:0000894,7.67e-18,2;CL:0000806,7.67e-18,2;CL:0000807,7.67e-18,2;CL:0000805,7.67e-18,2;CL:0002425,7.67e-18,2;CL:0000349,1.84e-16,19;CL:0002541,2.59e-12,3 | |||
|ontology_enrichment_development_v019=CL:0002425;7.67e-18;2 | |||
|ontology_enrichment_disease=DOID:4430!8.49e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!5.06e-13!4;UBERON:0005058!5.06e-13!4;UBERON:0009113!5.06e-13!4;UBERON:0003295!5.06e-13!4;UBERON:0005562!5.06e-13!4;UBERON:0003351!7.60e-09!6;UBERON:0004177!1.21e-07!7;UBERON:0002079!3.36e-07!1;UBERON:0005631!6.49e-07!14;UBERON:0000158!6.49e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;2.06e-30;10!UBERON:0000158;2.06e-30;10!UBERON:0000305;5.35e-20;7!UBERON:0000478;3.48e-13;24!UBERON:0003124;2.89e-12;3!UBERON:0000920;2.89e-12;3!UBERON:0002107;6.59e-08;19!UBERON:0006925;6.59e-08;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.01e-22,14;UBERON:0000158,5.01e-22,14;UBERON:0000305,5.35e-20,7;UBERON:0004871,1.22e-17,8;UBERON:0000478,3.34e-13,24;UBERON:0000920,2.59e-12,3;UBERON:0002370,1.32e-09,4;UBERON:0005058,1.32e-09,4;UBERON:0009113,1.32e-09,4;UBERON:0003295,1.32e-09,4;UBERON:0005562,1.32e-09,4;UBERON:0002368,3.33e-09,35;UBERON:0002107,6.82e-08,19;UBERON:0006925,6.82e-08,19;UBERON:0008836,6.82e-08,19;UBERON:0000949,2.60e-07,45;UBERON:0008835,6.09e-07,22;UBERON:0003894,6.09e-07,22;UBERON:0003351,8.02e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42977993658148,0,0,0,1.06617584622764,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4658731678576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.56357616999166,10.7506245734731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.524759999977174,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0.250381861413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0.406870733204662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0.3062454773532,0,0,0.798169295285756,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413373593002368,0,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0.235676547101626,0,0,0,0,0,0,0,0,0,0.240724100067505,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.124149428591716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr18:72618246..72618294,- | |||
}} |
Latest revision as of 02:09, 26 July 2015
Short description: | p@chr18:72618246..72618294, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:72618246..72618294, - |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatic stem cell | 1.08e-65 | 2 |
hepatic mesenchymal stem cell | 1.08e-65 | 2 |
innate effector T cell | 3.61e-34 | 1 |
immature NK T cell | 3.61e-34 | 1 |
effector T cell | 3.61e-34 | 1 |
mature NK T cell | 3.61e-34 | 1 |
immature NK T cell stage IV | 3.61e-34 | 1 |
immature NK T cell stage I | 3.61e-34 | 1 |
immature NK T cell stage II | 3.61e-34 | 1 |
immature NK T cell stage III | 3.61e-34 | 1 |
amnion mesenchymal stem cell | 1.59e-27 | 5 |
thymocyte | 7.67e-18 | 2 |
double negative thymocyte | 7.67e-18 | 2 |
double-positive, alpha-beta thymocyte | 7.67e-18 | 2 |
DN4 thymocyte | 7.67e-18 | 2 |
DN1 thymic pro-T cell | 7.67e-18 | 2 |
DN2 thymocyte | 7.67e-18 | 2 |
DN3 thymocyte | 7.67e-18 | 2 |
immature single positive thymocyte | 7.67e-18 | 2 |
early T lineage precursor | 7.67e-18 | 2 |
extraembryonic cell | 1.84e-16 | 19 |
chorionic membrane mesenchymal stem cell | 2.59e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 5.01e-22 | 14 |
membranous layer | 5.01e-22 | 14 |
amnion | 5.35e-20 | 7 |
somatic layer of lateral plate mesoderm | 1.22e-17 | 8 |
extraembryonic structure | 3.34e-13 | 24 |
egg chorion | 2.59e-12 | 3 |
thymus | 1.32e-09 | 4 |
hemolymphoid system gland | 1.32e-09 | 4 |
thymic region | 1.32e-09 | 4 |
pharyngeal gland | 1.32e-09 | 4 |
thymus primordium | 1.32e-09 | 4 |
endocrine gland | 3.33e-09 | 35 |
liver | 6.82e-08 | 19 |
digestive gland | 6.82e-08 | 19 |
liver bud | 6.82e-08 | 19 |
endocrine system | 2.60e-07 | 45 |
hepatic diverticulum | 6.09e-07 | 22 |
liver primordium | 6.09e-07 | 22 |
pharyngeal epithelium | 8.02e-07 | 6 |