FFCP PHASE1:Hg19::chr19:14172854..14172901,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:14172854..14172901,- | |||
|coexpression_cluster_id=C1607 | |coexpression_cluster_id=C1607 | ||
|description=CAGE_peak_at_chr19:14172854..14172901,- | |description=CAGE_peak_at_chr19:14172854..14172901,- | ||
|id=chr19:14172854..14172901,- | |id=chr19:14172854..14172901,- | ||
|ontology_enrichment_celltype=CL:0002541!3.66e-07!3 | |ontology_enrichment_celltype=CL:0002541!3.66e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002541;1.06e-10;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.19e-10,3 | |||
|ontology_enrichment_development_v019=UBERON:0007297;1.52e-08;2 | |||
|ontology_enrichment_disease=DOID:299!2.28e-14!25;DOID:5093!2.55e-08!4;DOID:1612!2.55e-08!4;DOID:305!3.86e-08!106 | |ontology_enrichment_disease=DOID:299!2.28e-14!25;DOID:5093!2.55e-08!4;DOID:1612!2.55e-08!4;DOID:305!3.86e-08!106 | ||
|ontology_enrichment_disease_v019=DOID:299;2.99e-09;25!DOID:5093;5.01e-08;4!DOID:1612;5.01e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:299,3.06e-09,25;DOID:5093,5.53e-08,4;DOID:1612,5.53e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0000466!9.29e-14!126;UBERON:0004921!1.01e-13!129;UBERON:0004185!1.01e-13!129;UBERON:0004119!2.79e-13!169;UBERON:0000925!2.79e-13!169;UBERON:0006595!2.79e-13!169;UBERON:0001007!5.66e-13!155;UBERON:0001555!5.66e-13!155;UBERON:0007026!5.66e-13!155;UBERON:0000077!1.04e-12!130;UBERON:0005911!7.59e-12!82;UBERON:0005177!5.69e-11!107;UBERON:0009569!1.25e-10!113;UBERON:0001008!6.60e-10!45;UBERON:0005172!6.83e-10!55;UBERON:0005173!6.83e-10!55;UBERON:0000058!7.26e-10!26;UBERON:0003064!8.24e-10!37;UBERON:0000464!2.06e-09!104;UBERON:0005156!4.35e-09!59;UBERON:0000990!4.35e-09!59;UBERON:0006554!5.15e-09!44;UBERON:0003929!8.44e-09!54;UBERON:0004175!9.53e-09!25;UBERON:0002417!2.08e-08!61;UBERON:0000916!2.08e-08!61;UBERON:0004876!3.79e-08!20;UBERON:0006947!5.23e-08!3;UBERON:0004054!5.23e-08!3;UBERON:0005631!6.74e-08!14;UBERON:0000158!6.74e-08!14;UBERON:0001041!9.06e-08!98;UBERON:0003133!1.46e-07!48;UBERON:0007499!1.53e-07!25;UBERON:0009497!1.53e-07!25;UBERON:0000015!1.53e-07!25;UBERON:0002423!1.53e-07!25;UBERON:0006235!1.53e-07!25;UBERON:0004161!1.53e-07!25;UBERON:0000080!1.70e-07!18;UBERON:0002120!1.70e-07!18;UBERON:0004875!1.70e-07!18;UBERON:0005721!1.70e-07!18;UBERON:0005754!1.70e-07!18;UBERON:0007297!1.70e-07!18;UBERON:0002553!2.12e-07!70;UBERON:0003104!2.36e-07!238;UBERON:0009142!2.36e-07!238;UBERON:0003124!2.94e-07!7;UBERON:0000476!3.66e-07!3;UBERON:0000920!3.66e-07!3;UBERON:0009856!3.71e-07!26;UBERON:0007023!4.18e-07!115;UBERON:0002113!5.38e-07!27;UBERON:0003918!5.38e-07!27;UBERON:0005095!5.38e-07!27;UBERON:0007687!5.38e-07!27;UBERON:0002530!7.02e-07!59 | |ontology_enrichment_uberon=UBERON:0000466!9.29e-14!126;UBERON:0004921!1.01e-13!129;UBERON:0004185!1.01e-13!129;UBERON:0004119!2.79e-13!169;UBERON:0000925!2.79e-13!169;UBERON:0006595!2.79e-13!169;UBERON:0001007!5.66e-13!155;UBERON:0001555!5.66e-13!155;UBERON:0007026!5.66e-13!155;UBERON:0000077!1.04e-12!130;UBERON:0005911!7.59e-12!82;UBERON:0005177!5.69e-11!107;UBERON:0009569!1.25e-10!113;UBERON:0001008!6.60e-10!45;UBERON:0005172!6.83e-10!55;UBERON:0005173!6.83e-10!55;UBERON:0000058!7.26e-10!26;UBERON:0003064!8.24e-10!37;UBERON:0000464!2.06e-09!104;UBERON:0005156!4.35e-09!59;UBERON:0000990!4.35e-09!59;UBERON:0006554!5.15e-09!44;UBERON:0003929!8.44e-09!54;UBERON:0004175!9.53e-09!25;UBERON:0002417!2.08e-08!61;UBERON:0000916!2.08e-08!61;UBERON:0004876!3.79e-08!20;UBERON:0006947!5.23e-08!3;UBERON:0004054!5.23e-08!3;UBERON:0005631!6.74e-08!14;UBERON:0000158!6.74e-08!14;UBERON:0001041!9.06e-08!98;UBERON:0003133!1.46e-07!48;UBERON:0007499!1.53e-07!25;UBERON:0009497!1.53e-07!25;UBERON:0000015!1.53e-07!25;UBERON:0002423!1.53e-07!25;UBERON:0006235!1.53e-07!25;UBERON:0004161!1.53e-07!25;UBERON:0000080!1.70e-07!18;UBERON:0002120!1.70e-07!18;UBERON:0004875!1.70e-07!18;UBERON:0005721!1.70e-07!18;UBERON:0005754!1.70e-07!18;UBERON:0007297!1.70e-07!18;UBERON:0002553!2.12e-07!70;UBERON:0003104!2.36e-07!238;UBERON:0009142!2.36e-07!238;UBERON:0003124!2.94e-07!7;UBERON:0000476!3.66e-07!3;UBERON:0000920!3.66e-07!3;UBERON:0009856!3.71e-07!26;UBERON:0007023!4.18e-07!115;UBERON:0002113!5.38e-07!27;UBERON:0003918!5.38e-07!27;UBERON:0005095!5.38e-07!27;UBERON:0007687!5.38e-07!27;UBERON:0002530!7.02e-07!59 | ||
|ontology_enrichment_uberon_v019=UBERON:0006947;5.15e-12;3!UBERON:0004054;5.15e-12;3!UBERON:0003124;1.06e-10;3!UBERON:0000920;1.06e-10;3!UBERON:0005904;4.25e-09;4!UBERON:0003101;1.69e-08;22!UBERON:0000079;1.69e-08;22!UBERON:0001829;7.11e-08;2!UBERON:0003135;1.09e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,4.34e-12,101;UBERON:0006947,5.16e-12,3;UBERON:0004054,5.16e-12,3;UBERON:0000920,1.19e-10,3;UBERON:0005911,2.81e-10,82;UBERON:0004921,2.94e-10,118;UBERON:0009569,2.97e-10,112;UBERON:0001007,4.76e-10,145;UBERON:0001555,4.76e-10,145;UBERON:0007026,4.76e-10,145;UBERON:0004119,2.23e-09,160;UBERON:0000925,2.23e-09,160;UBERON:0006595,2.23e-09,160;UBERON:0005172,2.76e-09,54;UBERON:0005173,2.76e-09,54;UBERON:0005904,4.25e-09,4;UBERON:0006554,4.59e-09,47;UBERON:0001008,8.10e-09,48;UBERON:0003101,1.86e-08,22;UBERON:0000079,1.86e-08,22;UBERON:0002530,3.99e-08,59;UBERON:0002417,4.81e-08,60;UBERON:0000916,4.81e-08,60;UBERON:0001829,7.36e-08,2;UBERON:0003929,8.10e-08,54;UBERON:0002100,8.92e-08,199;UBERON:0003124,9.62e-08,7;UBERON:0003135,1.14e-07,11;UBERON:0000489,2.73e-07,31;UBERON:0002113,3.67e-07,26;UBERON:0003918,3.67e-07,26;UBERON:0011143,3.67e-07,26;UBERON:0005095,3.67e-07,26;UBERON:0007687,3.67e-07,26 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,4.91467873003018,2.79120467188971,0.218441372130172,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.03755620934217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.1536580090211,20.6393715502301,10.0434284135839,0,10.3310288376215,0,0,0,0,0,0,0,0,0,0,0,0,0,2.37061319387782,3.43394464837949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,2.41718899183244,0,0,0.114814448164607,0,0,1.80479845162965,0.616122696835318,0,0,0.105551628892876,0,0,0,0,0.270946437543853,0,1.52925763827023,1.66215201785745,0,0,0,0,0,0,9.273691048295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.43736026136555,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,2.20536194382929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55567026775618,0,0,0,0,0.95497793895076,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,2.56472854656027,0,0,0,0,0,3.1251331330228,0.0874599999961957,0,0,0.254253650292766,1.18193840883968,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,2.99733075704478,6.28303510868405,0.651884231532048,6.69902435437031,1.00757352742049,5.86338253620498,0,0,0,0,0,0,0,0,0,1.79556088975062,14.1353071433941,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,51.6905567732702,3.62972148145992,0,0,0,0,0,0,0,0,0.853828638089378,0,0.173559738335131,0.195984794828755,0.0870592065804026,16.4243068147508,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0,0.400794101257669,4.0556069000477,0,0.144090417154106,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0,0,0,1.10296455230113,0.824158583811665,0.876246070104404,0,0,0,0,0,0.137539436597234,0,0,0,0,0,23.2476836532635,14.3725571489895,0,0,0,0,0,0,0,0,0,0,0,0,0,13.0431487973493,0,0,0,0,18.3251905802335,4.59185874041087,2.20086027139532,10.3559763836799,0,0,0,0,0,0,0,0,1.88464915500281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601682626794058,0,21.1008783032935,4.45241380618418,0,0.147856086217045,0,0,0,0,0,5.48257766857182,1.48863353516788,0,0.511049710558381,0,0,0,0,2.39496399439125,0,0,0,0,0,1.00108261702862,2.43328587836593,0,1.40136081656895,0,0,0,0,0,0,0,0,0,0,0,2.58136415292167,0,0,59.697574076921,1.14553434272025,0,0,5.8164824534852,0.098150233615243,0.731507549893617,0,0,0,0,0,0,0,0,0,0,1.92935395269862,0,0,0.980593287015622,0,0,0,0,0,0,0,0,0,0,0.481448200135009,13.8763913766838,4.12856355064087,0,0,0,0,5.290268405154,0,0,0.432626562123789,0,0,0,0,0,0,0,1.13668047327359,0,0,0,0.213233981900981,0,0,0,0,7.82860046821428,5.05292972395548,0,0,0,0.143444410785353,0,0,0,0,0,2.34640942403454,0.611207220914332,0.813792356631477,0.665756774185513,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,4.91467873003018,2.79120467188971,0.218441372130172,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.03755620934217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.1536580090211,20.6393715502301,10.0434284135839,0,10.3310288376215,0,0,0,0,0,0,0,0,0,0,0,0,0,2.37061319387782,3.43394464837949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,2.41718899183244,0,0,0.114814448164607,0,0,1.80479845162965,0.616122696835318,0,0,0.105551628892876,0,0,0,0,0.270946437543853,0,1.52925763827023,1.66215201785745,0,0,0,0,0,0,9.273691048295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.43736026136555,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,2.20536194382929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55567026775618,0,0,0,0,0.95497793895076,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,2.56472854656027,0,0,0,0,0,3.1251331330228,0.0874599999961957,0,0,0.254253650292766,1.18193840883968,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,2.99733075704478,6.28303510868405,0.651884231532048,6.69902435437031,1.00757352742049,5.86338253620498,0,0,0,0,0,0,0,0,0,1.79556088975062,14.1353071433941,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,51.6905567732702,3.62972148145992,0,0,0,0,0,0,0,0,0.853828638089378,0,0.173559738335131,0.195984794828755,0.0870592065804026,16.4243068147508,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0,0.400794101257669,4.0556069000477,0,0.144090417154106,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0,0,0,1.10296455230113,0.824158583811665,0.876246070104404,0,0,0,0,0,0.137539436597234,0,0,0,0,0,23.2476836532635,14.3725571489895,0,0,0,0,0,0,0,0,0,0,0,0,0,13.0431487973493,0,0,0,0,18.3251905802335,4.59185874041087,2.20086027139532,10.3559763836799,0,0,0,0,0,0,0,0,1.88464915500281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601682626794058,0,21.1008783032935,4.45241380618418,0,0.147856086217045,0,0,0,0,0,5.48257766857182,1.48863353516788,0,0.511049710558381,0,0,0,0,2.39496399439125,0,0,0,0,0,1.00108261702862,2.43328587836593,0,1.40136081656895,0,0,0,0,0,0,0,0,0,0,0,2.58136415292167,0,0,59.697574076921,1.14553434272025,0,0,5.8164824534852,0.098150233615243,0.731507549893617,0,0,0,0,0,0,0,0,0,0,1.92935395269862,0,0,0.980593287015622,0,0,0,0,0,0,0,0,0,0,0.481448200135009,13.8763913766838,4.12856355064087,0,0,0,0,5.290268405154,0,0,0.432626562123789,0,0,0,0,0,0,0,1.13668047327359,0,0,0,0.213233981900981,0,0,0,0,7.82860046821428,5.05292972395548,0,0,0,0.143444410785353,0,0,0,0,0,2.34640942403454,0.611207220914332,0.813792356631477,0.665756774185513,0,0 | ||
|short_description=p@chr19:14172854..14172901,- | |short_description=p@chr19:14172854..14172901,- | ||
}} | }} |
Latest revision as of 04:16, 26 July 2015
Short description: | p@chr19:14172854..14172901, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:14172854..14172901, - |
Coexpression cluster: | C1607_seminal_ductus_Hepatocyte_epididymis_pancreas_kidney_stomach |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.19e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 4.34e-12 | 101 |
male genital duct | 5.16e-12 | 3 |
internal male genitalia | 5.16e-12 | 3 |
egg chorion | 1.19e-10 | 3 |
endo-epithelium | 2.81e-10 | 82 |
subdivision of digestive tract | 2.94e-10 | 118 |
subdivision of trunk | 2.97e-10 | 112 |
digestive system | 4.76e-10 | 145 |
digestive tract | 4.76e-10 | 145 |
primitive gut | 4.76e-10 | 145 |
endoderm-derived structure | 2.23e-09 | 160 |
endoderm | 2.23e-09 | 160 |
presumptive endoderm | 2.23e-09 | 160 |
abdomen element | 2.76e-09 | 54 |
abdominal segment element | 2.76e-09 | 54 |
duct of male reproductive system | 4.25e-09 | 4 |
urinary system structure | 4.59e-09 | 47 |
renal system | 8.10e-09 | 48 |
male organism | 1.86e-08 | 22 |
male reproductive system | 1.86e-08 | 22 |
gland | 3.99e-08 | 59 |
abdominal segment of trunk | 4.81e-08 | 60 |
abdomen | 4.81e-08 | 60 |
major salivary gland | 7.36e-08 | 2 |
gut epithelium | 8.10e-08 | 54 |
trunk | 8.92e-08 | 199 |
chorion | 9.62e-08 | 7 |
male reproductive organ | 1.14e-07 | 11 |
cavitated compound organ | 2.73e-07 | 31 |
kidney | 3.67e-07 | 26 |
kidney mesenchyme | 3.67e-07 | 26 |
upper urinary tract | 3.67e-07 | 26 |
kidney rudiment | 3.67e-07 | 26 |
kidney field | 3.67e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 3.06e-09 | 25 |
thoracic cancer | 5.53e-08 | 4 |
breast cancer | 5.53e-08 | 4 |