FFCP PHASE1:Hg19::chr19:34618510..34618515,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:34618510..34618515,- | |||
|coexpression_cluster_id=C19 | |coexpression_cluster_id=C19 | ||
|description=CAGE_peak_at_chr19:34618510..34618515,- | |description=CAGE_peak_at_chr19:34618510..34618515,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000817!2.43e-09!3 | |ontology_enrichment_celltype=CL:0000817!2.43e-09!3 | ||
|ontology_enrichment_celltype_v019=CL:0000946;5.05e-34;1!CL:1001319;5.05e-34;1!CL:1000600;5.05e-34;1!CL:0000786;5.05e-34;1 | |ontology_enrichment_celltype_v019=CL:0000946;5.05e-34;1!CL:1001319;5.05e-34;1!CL:1000600;5.05e-34;1!CL:0000786;5.05e-34;1 | ||
|ontology_enrichment_celltype_v019_2=CL:1001319,5.05e-34,1;CL:1000600,5.05e-34,1;CL:0000946,9.85e-34,1;CL:0000786,9.85e-34,1;CL:0000980,9.85e-34,1;CL:0000785,1.27e-17,2;CL:0000955,1.27e-17,2;CL:0000818,1.27e-17,2;CL:0000954,1.27e-17,2;CL:0000816,1.27e-17,2;CL:0000817,3.24e-12,3 | |||
|ontology_enrichment_development_v019=CL:0000954;9.07e-18;2!UBERON:0009847;2.59e-12;3!UBERON:0003353;2.59e-12;3 | |ontology_enrichment_development_v019=CL:0000954;9.07e-18;2!UBERON:0009847;2.59e-12;3!UBERON:0003353;2.59e-12;3 | ||
|ontology_enrichment_disease=DOID:14566!3.27e-19!239;DOID:162!6.26e-19!235;DOID:305!1.68e-13!106;DOID:0050687!1.37e-12!143;DOID:1749!1.65e-08!14 | |ontology_enrichment_disease=DOID:14566!3.27e-19!239;DOID:162!6.26e-19!235;DOID:305!1.68e-13!106;DOID:0050687!1.37e-12!143;DOID:1749!1.65e-08!14 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0004645;5.05e-34;1!UBERON:0001256;5.05e-34;1!UBERON:0001259;5.05e-34;1!UBERON:0001255;9.07e-18;2!UBERON:0001556;9.07e-18;2!UBERON:0000365;6.55e-08;5!UBERON:0005910;8.48e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0004645;5.05e-34;1!UBERON:0001256;5.05e-34;1!UBERON:0001259;5.05e-34;1!UBERON:0001255;9.07e-18;2!UBERON:0001556;9.07e-18;2!UBERON:0000365;6.55e-08;5!UBERON:0005910;8.48e-07;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,5.05e-34,1;UBERON:0001256,5.05e-34,1;UBERON:0001259,5.05e-34,1;UBERON:0001255,9.07e-18,2;UBERON:0001556,9.07e-18,2;UBERON:0000162,2.08e-10,14;UBERON:0001353,2.08e-10,14;UBERON:0000163,2.08e-10,14;UBERON:0006866,2.08e-10,14;UBERON:0000164,2.08e-10,14;UBERON:0000931,2.08e-10,14;UBERON:0004122,8.85e-10,15;UBERON:0001046,6.36e-08,19;UBERON:0000365,6.55e-08,5;UBERON:0006554,4.59e-07,47;UBERON:0001008,6.25e-07,48;UBERON:0005910,8.48e-07,6 | |||
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| ||
|short_description=p@chr19:34618510..34618515,- | |short_description=p@chr19:34618510..34618515,- | ||
}} | }} |
Latest revision as of 06:20, 26 July 2015
Short description: | p@chr19:34618510..34618515, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:34618510..34618515, - |
Coexpression cluster: | C19_embryonic_testis_cord_chronic_CD14_NK_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bladder cell | 5.05e-34 | 1 |
lower urinary tract cell | 5.05e-34 | 1 |
antibody secreting cell | 9.85e-34 | 1 |
plasma cell | 9.85e-34 | 1 |
plasmablast | 9.85e-34 | 1 |
mature B cell | 1.27e-17 | 2 |
pre-B-II cell | 1.27e-17 | 2 |
transitional stage B cell | 1.27e-17 | 2 |
small pre-B-II cell | 1.27e-17 | 2 |
immature B cell | 1.27e-17 | 2 |
precursor B cell | 3.24e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 5.05e-34 | 1 |
wall of urinary bladder | 5.05e-34 | 1 |
mucosa of urinary bladder | 5.05e-34 | 1 |
urinary bladder | 9.07e-18 | 2 |
lower urinary tract | 9.07e-18 | 2 |
cloaca | 2.08e-10 | 14 |
anal region | 2.08e-10 | 14 |
embryonic cloaca | 2.08e-10 | 14 |
terminal part of digestive tract | 2.08e-10 | 14 |
primitive urogenital sinus | 2.08e-10 | 14 |
proctodeum | 2.08e-10 | 14 |
genitourinary system | 8.85e-10 | 15 |
hindgut | 6.36e-08 | 19 |
urothelium | 6.55e-08 | 5 |
urinary system structure | 4.59e-07 | 47 |
renal system | 6.25e-07 | 48 |
transitional epithelium | 8.48e-07 | 6 |