FFCP PHASE1:Hg19::chr1:244869185..244869203,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:244869185..244869203,+ | |||
|description=CAGE_peak_at_chr1:244869185..244869203,+ | |description=CAGE_peak_at_chr1:244869185..244869203,+ | ||
|id=chr1:244869185..244869203,+ | |id=chr1:244869185..244869203,+ | ||
|ontology_enrichment_celltype=CL:0000039!1.24e-07!7;CL:0000586!1.24e-07!7 | |ontology_enrichment_celltype=CL:0000039!1.24e-07!7;CL:0000586!1.24e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0002591;1.66e-15;1!CL:0000039;4.75e-09;7!CL:0000586;4.75e-09;7!CL:0002545;1.29e-08;2!CL:0000047;2.07e-08;2!CL:0000317;2.07e-08;2!CL:1000448;2.07e-08;2!CL:0002308;2.07e-08;2!CL:0002140;2.07e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002591,1.78e-15,1;CL:0000039,6.83e-09,7;CL:0000586,6.83e-09,7;CL:0002545,1.29e-08,2;CL:0000317,1.86e-08,2;CL:1000448,1.86e-08,2;CL:0002308,1.86e-08,2;CL:0002140,1.86e-08,2;CL:0000047,6.18e-08,8 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.67e-13;10!UBERON:0005564;1.67e-13;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1909;2.07e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,2.48e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0003101!6.93e-11!22;UBERON:0000079!6.93e-11!22;UBERON:0003937!4.09e-07!12;UBERON:0005399!4.09e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.02e-16;8!UBERON:0002171;1.66e-15;1!UBERON:0006518;1.66e-15;1!UBERON:0008949;1.66e-15;1!UBERON:0000101;1.66e-15;1!UBERON:0002167;1.66e-15;1!UBERON:0003135;2.48e-12;11!UBERON:0005800;1.29e-08;2!UBERON:0001515;1.29e-08;2!UBERON:0002419;2.07e-08;2!UBERON:0007771;2.07e-08;2!UBERON:0000078;2.07e-08;2!UBERON:0003297;2.07e-08;2!UBERON:0001821;2.07e-08;2!UBERON:0003487;2.07e-08;2!UBERON:0002012;2.07e-08;2!UBERON:0001820;2.07e-08;2!UBERON:0008886;2.07e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.65e-16,8;UBERON:0002171,9.99e-16,1;UBERON:0006518,9.99e-16,1;UBERON:0008949,9.99e-16,1;UBERON:0000101,9.99e-16,1;UBERON:0002167,9.99e-16,1;UBERON:0003135,3.51e-12,11;UBERON:0005800,1.29e-08,2;UBERON:0001515,1.29e-08,2;UBERON:0002419,1.86e-08,2;UBERON:0007771,1.86e-08,2;UBERON:0003297,1.86e-08,2;UBERON:0001821,1.86e-08,2;UBERON:0003487,1.86e-08,2;UBERON:0001820,1.86e-08,2;UBERON:0005089,1.86e-08,2;UBERON:0005088,1.86e-08,2;UBERON:0000078,2.15e-08,2;UBERON:0007497,2.15e-08,2;UBERON:0003643,2.15e-08,2;UBERON:0003504,2.15e-08,2;UBERON:0003469,2.15e-08,2;UBERON:0003496,2.15e-08,2;UBERON:0002012,2.15e-08,2;UBERON:0008886,2.15e-08,2;UBERON:0007303,2.15e-08,2;UBERON:0002061,2.15e-08,2;UBERON:0005432,2.15e-08,2;UBERON:0004363,2.15e-08,2 | |||
|phase1_expression=0.363356758541113,0,0.140954404095971,0,0.446961094427288,0,0,0.631719873426831,0.261185628199839,0,0,0,0.263766978228454,0.247532705920093,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0.0787107813136792,0,0,0,0,0,0.369754010166788,0.0774672005803016,0,0,0,0,0,0,0.32389366601898,0,0.290796477559129,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0.376484679085209,0.272906150057846,0,0.612167784741805,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0.167186495390678,0,0,0,0,0,0,0,0.25618263945135,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.261958150995425,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0.419499436209906,0,0.208994966536811,0,0,0,0,0,0,0,2.43042584364528,0.0892997282840798,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0.936480230490962,0,0.149448680551801,0,0,0,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0.103052529238439,0,0.18611685633159,0,0,0,0.0920498986422993,0.484938170456436,0,0,0,0.57978255948989,0.272746120590835,0,0.243947412259191,0.132529768321485,0.232387885739037,0.310983165046111,0,0.36497735907583,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.219500570817251,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0.462985512576611,0.380508304469197,0,0,0,0,0,0,0,0.141775097242386,0.179117045405697,0,0,0,0.264145302039678,0,0,0,0.126995788584338,0,0,0,0.102827492703324,0,0.571652865261156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,1.2162378064119,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,0,0,0,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0,0.157702415033935,0.117141414992713,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0.280660094433074,0.384417447767103,0,0.160853921143607,0,0,0.177561725313127,0.0821271560138091,0,0.116210378459959,0.362578348774867,0.601519410909855,0.460404944679482,0,0,0.262248829918848,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,1.14853107599234,0,0,0.580024309752732,0,0,0,0,0.145016693914229,0,0.178064071293475,0.330569830721956,0.384380134730212,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0.318203247925937,0,0.359744915166629,0,0,0,0,0,0,0.243713489631284,0,0.545999645631943,0.424216295861138,1.13008116620243,0,0,0,0,0,0.202910376962704,0,0.281695602532241,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0.185803175125719,0.144269212976445,0,0,0,0,0.211673582723883,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.439524537815682,0,0.222886768554957,0.284136146806413,0,0.296964680832639,0.307160702099232,0,0,0,0.329607748453519,0,0,0,0,0,0,0,0,0.179021174675609,0,0.197286811273867,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0.110579259931225,0,0,0.10893846351899,0,0.461701551022782,0,0.23056390438806,0.718061155278177,0.217294743844016,0,0.732780747214898,1.5991043280559,0,0.156980256395025,0,0.225595660617181,0,0,0,0,0,0.163232808159148,0,0,0,0.353830258013357,0,0,0.247127877893006,0,0,0,0.234264445725339,0.364909578431332,0,0,0.394584402849391,0,0,0.063186579628488,1.50323419414493,0.311064574191741,0,0,0,0,0,0.138674673013139,0.173559738335131,0,0,0.52418000472609,0,0.0967563312890851,0,0,0.0969890164884194,0.0882561266915003,0.225980740780532,0.137041924646751,0,0.0633107959558787,0,0,0.213452994739353,0.19980960958213,0,0.114536596165916,0,0,0,0.471388069233591,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0.201550417460179,0,0,0,0.0824158583811665,0,0,0,0,0,0.482259445395058,1.10031549277787,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0.732761168390412,0,0,0,0,0,0.320362237703084,0,1.24271716604159,0,0,0,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0,1.14681839138014,0,0.124192805882767,0.138348634936231,0,1.06154382279153,0.285465333544967,0.235265819698172,0,0,0,0,0,0,0,0,0.228840068396924,0.151230923763239,0,0.147855149989634,0,0.449803112163605,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0.226705925512272,0,0,0,0,0.219284049578707,0,0.192914038270915,0.337884881306145,0,0,0,0,0.194860308839388,0,0.327130788511688,0,0,0,0,0,0.344429959321631,0,0.184105950251841,0.279759015438889,0,0,0.215649622793364,0,0,0,0,0,0,0,0.23658523500376,0,0.352675943690684,0.3062454773532,0,0,0,0.205116364240755,0,0,0,0,0,0.235939446695481,0.183428598521679,0.115525666150338,0.381382095467167,0,0.397832444232549,0.526472298444801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.177404740325278,0,0,0,0,0.118193840883968,0.111231401892069,0.235479278551542,0,0,0,0,0.47775168788705,0.0714765441766563,0,0,0,0,0,0.51215543128185,0,0,0.118332000730565,0,0.423387050190929,0,0.62041277132864,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0.22589216407792,0.109940516745429,0,0.154348316215889,0,0,0,0,0,0.297046400327086,0.4226557275834,0,0.0939839179798536,0,0,0,0,0,0.730336388246517,0,0.143339583151451,0,0,0,0,0,0,0,0.504665699340316,0.109265571963696,0,1.01988829741982,0.534434810531121,1.01084389488329,0.250707539292375,5.91073846102267,0,0,0.103432995861895,0,0,0.193766729508018,0.0620747142958579,0,0.445530107947154,0,0.653150243690884,0,0.0673520530145875,0,0,0.0814032686109745,0.640364075266293,0,0,0,0,0,0,0,0 | |phase1_expression=0.363356758541113,0,0.140954404095971,0,0.446961094427288,0,0,0.631719873426831,0.261185628199839,0,0,0,0.263766978228454,0.247532705920093,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0.0787107813136792,0,0,0,0,0,0.369754010166788,0.0774672005803016,0,0,0,0,0,0,0.32389366601898,0,0.290796477559129,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0.376484679085209,0.272906150057846,0,0.612167784741805,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0.167186495390678,0,0,0,0,0,0,0,0.25618263945135,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.261958150995425,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0.419499436209906,0,0.208994966536811,0,0,0,0,0,0,0,2.43042584364528,0.0892997282840798,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0.936480230490962,0,0.149448680551801,0,0,0,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0.103052529238439,0,0.18611685633159,0,0,0,0.0920498986422993,0.484938170456436,0,0,0,0.57978255948989,0.272746120590835,0,0.243947412259191,0.132529768321485,0.232387885739037,0.310983165046111,0,0.36497735907583,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.219500570817251,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0.462985512576611,0.380508304469197,0,0,0,0,0,0,0,0.141775097242386,0.179117045405697,0,0,0,0.264145302039678,0,0,0,0.126995788584338,0,0,0,0.102827492703324,0,0.571652865261156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,1.2162378064119,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,0,0,0,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0,0.157702415033935,0.117141414992713,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0.280660094433074,0.384417447767103,0,0.160853921143607,0,0,0.177561725313127,0.0821271560138091,0,0.116210378459959,0.362578348774867,0.601519410909855,0.460404944679482,0,0,0.262248829918848,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,1.14853107599234,0,0,0.580024309752732,0,0,0,0,0.145016693914229,0,0.178064071293475,0.330569830721956,0.384380134730212,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0.318203247925937,0,0.359744915166629,0,0,0,0,0,0,0.243713489631284,0,0.545999645631943,0.424216295861138,1.13008116620243,0,0,0,0,0,0.202910376962704,0,0.281695602532241,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0.185803175125719,0.144269212976445,0,0,0,0,0.211673582723883,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.439524537815682,0,0.222886768554957,0.284136146806413,0,0.296964680832639,0.307160702099232,0,0,0,0.329607748453519,0,0,0,0,0,0,0,0,0.179021174675609,0,0.197286811273867,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0.110579259931225,0,0,0.10893846351899,0,0.461701551022782,0,0.23056390438806,0.718061155278177,0.217294743844016,0,0.732780747214898,1.5991043280559,0,0.156980256395025,0,0.225595660617181,0,0,0,0,0,0.163232808159148,0,0,0,0.353830258013357,0,0,0.247127877893006,0,0,0,0.234264445725339,0.364909578431332,0,0,0.394584402849391,0,0,0.063186579628488,1.50323419414493,0.311064574191741,0,0,0,0,0,0.138674673013139,0.173559738335131,0,0,0.52418000472609,0,0.0967563312890851,0,0,0.0969890164884194,0.0882561266915003,0.225980740780532,0.137041924646751,0,0.0633107959558787,0,0,0.213452994739353,0.19980960958213,0,0.114536596165916,0,0,0,0.471388069233591,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0.201550417460179,0,0,0,0.0824158583811665,0,0,0,0,0,0.482259445395058,1.10031549277787,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0.732761168390412,0,0,0,0,0,0.320362237703084,0,1.24271716604159,0,0,0,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0,1.14681839138014,0,0.124192805882767,0.138348634936231,0,1.06154382279153,0.285465333544967,0.235265819698172,0,0,0,0,0,0,0,0,0.228840068396924,0.151230923763239,0,0.147855149989634,0,0.449803112163605,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0.226705925512272,0,0,0,0,0.219284049578707,0,0.192914038270915,0.337884881306145,0,0,0,0,0.194860308839388,0,0.327130788511688,0,0,0,0,0,0.344429959321631,0,0.184105950251841,0.279759015438889,0,0,0.215649622793364,0,0,0,0,0,0,0,0.23658523500376,0,0.352675943690684,0.3062454773532,0,0,0,0.205116364240755,0,0,0,0,0,0.235939446695481,0.183428598521679,0.115525666150338,0.381382095467167,0,0.397832444232549,0.526472298444801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.177404740325278,0,0,0,0,0.118193840883968,0.111231401892069,0.235479278551542,0,0,0,0,0.47775168788705,0.0714765441766563,0,0,0,0,0,0.51215543128185,0,0,0.118332000730565,0,0.423387050190929,0,0.62041277132864,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0.22589216407792,0.109940516745429,0,0.154348316215889,0,0,0,0,0,0.297046400327086,0.4226557275834,0,0.0939839179798536,0,0,0,0,0,0.730336388246517,0,0.143339583151451,0,0,0,0,0,0,0,0.504665699340316,0.109265571963696,0,1.01988829741982,0.534434810531121,1.01084389488329,0.250707539292375,5.91073846102267,0,0,0.103432995861895,0,0,0.193766729508018,0.0620747142958579,0,0.445530107947154,0,0.653150243690884,0,0.0673520530145875,0,0,0.0814032686109745,0.640364075266293,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:244869185..244869203,+ | |short_description=p@chr1:244869185..244869203,+ | ||
}} | }} |
Latest revision as of 05:58, 28 July 2015
Short description: | p@chr1:244869185..244869203, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:244869185..244869203, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the pulmonary artery | 1.78e-15 | 1 |
germ line cell | 6.83e-09 | 7 |
germ cell | 6.83e-09 | 7 |
thoracic aorta endothelial cell | 1.29e-08 | 2 |
sebum secreting cell | 1.86e-08 | 2 |
epithelial cell of sweat gland | 1.86e-08 | 2 |
epithelial cell of skin gland | 1.86e-08 | 2 |
acinar cell of sebaceous gland | 1.86e-08 | 2 |
neuronal stem cell | 6.18e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
testis | 1.65e-16 | 8 |
lower lobe of right lung | 9.99e-16 | 1 |
right lung lobe | 9.99e-16 | 1 |
lower lobe of lung | 9.99e-16 | 1 |
lobe of lung | 9.99e-16 | 1 |
right lung | 9.99e-16 | 1 |
male reproductive organ | 3.51e-12 | 11 |
segment of aorta | 1.29e-08 | 2 |
thoracic aorta | 1.29e-08 | 2 |
skin gland | 1.86e-08 | 2 |
epidermis gland | 1.86e-08 | 2 |
gland of integumental system | 1.86e-08 | 2 |
sebaceous gland | 1.86e-08 | 2 |
skin sebaceous gland | 1.86e-08 | 2 |
sweat gland | 1.86e-08 | 2 |
sweat gland placode | 1.86e-08 | 2 |
sebaceous gland placode | 1.86e-08 | 2 |
mixed ectoderm/mesoderm/endoderm-derived structure | 2.15e-08 | 2 |
developing epithelial placode | 2.15e-08 | 2 |
respiratory system arterial blood vessel | 2.15e-08 | 2 |
respiratory system blood vessel | 2.15e-08 | 2 |
respiratory system artery | 2.15e-08 | 2 |
head blood vessel | 2.15e-08 | 2 |
pulmonary artery | 2.15e-08 | 2 |
pulmonary vascular system | 2.15e-08 | 2 |
pharyngeal vasculature | 2.15e-08 | 2 |
truncus arteriosus | 2.15e-08 | 2 |
aortic sac | 2.15e-08 | 2 |
pharyngeal arch artery | 2.15e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.48e-08 | 2 |