FFCP PHASE1:Hg19::chr21:47424225..47424238,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr21:47424225..47424238,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_at_chr21:47424225..47424238,+ | |description=CAGE_peak_at_chr21:47424225..47424238,+ | ||
|id=chr21:47424225..47424238,+ | |id=chr21:47424225..47424238,+ | ||
|ontology_enrichment_celltype=CL:0000055!4.38e-39!180;CL:0000057!3.29e-24!75;CL:0000680!7.12e-16!57;CL:0000056!7.12e-16!57;CL:0000355!7.12e-16!57;CL:0000187!1.37e-15!54;CL:0000183!2.78e-15!59;CL:0000393!5.03e-14!60;CL:0000211!5.03e-14!60;CL:0000192!9.62e-12!42;CL:0000514!9.62e-12!42;CL:0002620!1.52e-10!23;CL:0000048!2.86e-09!430;CL:0000359!5.29e-09!32;CL:0000723!1.51e-08!436;CL:0000034!4.08e-08!444;CL:0002334!1.64e-07!12 | |ontology_enrichment_celltype=CL:0000055!4.38e-39!180;CL:0000057!3.29e-24!75;CL:0000680!7.12e-16!57;CL:0000056!7.12e-16!57;CL:0000355!7.12e-16!57;CL:0000187!1.37e-15!54;CL:0000183!2.78e-15!59;CL:0000393!5.03e-14!60;CL:0000211!5.03e-14!60;CL:0000192!9.62e-12!42;CL:0000514!9.62e-12!42;CL:0002620!1.52e-10!23;CL:0000048!2.86e-09!430;CL:0000359!5.29e-09!32;CL:0000723!1.51e-08!436;CL:0000034!4.08e-08!444;CL:0002334!1.64e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000499;3.14e-11;28!CL:0002570;1.19e-07;8!CL:0000135;3.04e-07;3!CL:0000388;3.04e-07;3!CL:0000057;3.07e-07;73!CL:0002334;4.06e-07;12!CL:0000187;5.56e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.99e-19,76;CL:0000048,4.12e-15,427;CL:0000723,1.44e-14,433;CL:0000034,7.19e-14,441;CL:0000680,2.16e-11,58;CL:0000056,2.16e-11,58;CL:0000355,2.16e-11,58;CL:0000187,2.86e-11,55;CL:0000499,3.80e-11,28;CL:0002320,7.05e-10,361;CL:0000393,1.49e-09,61;CL:0000211,1.49e-09,61;CL:0000192,4.79e-08,43;CL:0000514,4.79e-08,43;CL:0002570,1.51e-07,8;CL:0000134,2.92e-07,354;CL:0000135,3.46e-07,3;CL:0000388,3.46e-07,3;CL:0002334,6.30e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000355;3.92e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!6.93e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:17;3.92e-08;5!DOID:450;3.92e-08;5!DOID:66;3.92e-08;5!DOID:423;3.92e-08;5!DOID:0080000;3.92e-08;5!DOID:11722;3.92e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.67e-08,5;DOID:450,2.67e-08,5;DOID:66,2.67e-08,5;DOID:423,2.67e-08,5;DOID:0080000,2.67e-08,5;DOID:11722,2.67e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!9.89e-18!83;UBERON:0002329!9.89e-18!83;UBERON:0003077!9.89e-18!83;UBERON:0003059!9.89e-18!83;UBERON:0007282!9.89e-18!83;UBERON:0009618!9.89e-18!83;UBERON:0007285!9.89e-18!83;UBERON:0004290!4.43e-17!70;UBERON:0002385!3.83e-15!63;UBERON:0001015!3.83e-15!63;UBERON:0000383!3.83e-15!63;UBERON:0001134!9.15e-15!61;UBERON:0002036!9.15e-15!61;UBERON:0003082!9.15e-15!61;UBERON:0000486!1.00e-13!82;UBERON:0005256!3.27e-12!143;UBERON:0000475!3.10e-10!365;UBERON:0003102!8.79e-10!95;UBERON:0002199!1.81e-09!45;UBERON:0002416!1.81e-09!45;UBERON:0002100!7.67e-08!216;UBERON:0001013!2.03e-07!14;UBERON:0000490!4.57e-07!138;UBERON:0004872!8.44e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;3.16e-11;14!UBERON:0002072;4.17e-10;5!UBERON:0002385;7.50e-08;31!UBERON:0001015;7.50e-08;31!UBERON:0000383;7.50e-08;31!UBERON:0002199;8.37e-08;46!UBERON:0002416;8.37e-08;46!UBERON:0004905;9.40e-08;8!UBERON:0000982;9.40e-08;8!UBERON:0004770;9.40e-08;8!UBERON:0007846;3.04e-07;3!UBERON:0000043;3.04e-07;3!UBERON:0007845;3.04e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.20e-12,73;UBERON:0002329,3.44e-12,71;UBERON:0003059,3.44e-12,71;UBERON:0007282,3.44e-12,71;UBERON:0004290,3.44e-12,71;UBERON:0009618,3.44e-12,71;UBERON:0003077,6.49e-12,72;UBERON:0007285,6.49e-12,72;UBERON:0000486,3.00e-11,83;UBERON:0001134,3.25e-11,62;UBERON:0002036,3.25e-11,62;UBERON:0003082,3.25e-11,62;UBERON:0001013,3.35e-11,14;UBERON:0002385,1.18e-10,64;UBERON:0001015,1.18e-10,64;UBERON:0000383,1.18e-10,64;UBERON:0005256,1.62e-10,122;UBERON:0007503,2.05e-10,78;UBERON:0002199,2.22e-10,46;UBERON:0002416,2.22e-10,46;UBERON:0003104,3.57e-10,160;UBERON:0009142,3.57e-10,160;UBERON:0002072,3.58e-10,5;UBERON:0002384,1.35e-09,371;UBERON:0003102,1.30e-08,99;UBERON:0004905,4.53e-08,8;UBERON:0000982,4.53e-08,8;UBERON:0004770,4.53e-08,8;UBERON:0000490,1.34e-07,148;UBERON:0007846,3.46e-07,3;UBERON:0000043,3.46e-07,3;UBERON:0007845,3.46e-07,3 | |||
|phase1_expression=0,2.78330681058278,0.986680828671798,0,0.893922188854576,2.61701557230111,2.53299878168311,2.52687949370732,2.87304191019822,0,0,0,0,0.866364470720326,2.98257638155124,3.36162573225888,3.01347264011988,4.38186054232424,4.87932798790507,0.369363174230364,1.22400414746552,0.313454721478088,0.286235987131057,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0.255725123687061,2.53007406669196,0,5.21447468258965,0,1.45990461090791,0,0,0.087834785693126,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.633152558322899,0.397227542439656,4.30254931123221,0.354668382198357,0,0,1.72667283892012,0.311211035399766,0.269421344139376,0.653847612453835,1.51357427644931,4.60940739583999,0.234321431833797,1.87296046098192,0.570471821544449,3.43731965269142,0.469737994575059,0.323745888736263,0.561803226808994,0.408308342509787,0.982674538494144,1.23990937410919,3.56400857184616,2.71993622206413,1.82032272387605,2.87447256726495,0,0.250237039743928,0,0,0.919463387397059,1.05166641234618,0.226864366320042,1.61450672119976,2.13557388818567,1.69545520927649,1.20036438433761,1.75189299705346,2.06112432036503,0.930584281657949,1.0126579934476,0.876933046450788,0.504867548488229,0.276149695926898,3.87950536365149,1.06502877754984,0.403008392910561,0.67824236924195,0,0,0,0,0,0.232387885739037,0.10366105501537,0,0,0,12.8648187638577,0,2.3218396401599,2.16563844500876,0,0,0,0,0,0,0,0,0,0,0,2.057870056657,1.47008711385542,0,0,1.18157981336281,0,0,0.171567810298526,0,0,0,0,0.651616610620649,2.07986957055916,0,0.34779121492523,0.352226082707465,0.144366447761074,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0.207328115540772,0,0,0.063497894292169,0,0,0,0.719792448923265,0,0,0.672786506072164,0,0.51336800074665,0.129271715757778,3.57656445851882,3.381211010224,0.531876233169741,1.04007436911366,0,0,0.799266537048298,3.57444984145369,5.96883765930587,0,0.977208552881205,1.77695974371273,0,0.301439377059586,0,0.099972991182057,0,0,0,1.4377491329495,0,0,1.30303176000821,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82190430954022,2.00068208423871,2.98391526069709,2.07970861530807,3.7470087647404,0.473107245101804,1.05427273493442,0,0,2.0694614258501,0.664225598535437,0.184369168541703,2.43274120510632,2.93701736194111,3.77457766191941,0,0,0,0,0,0.604780586659361,0.496215615637554,0.767309866440312,2.24528075546459,0.512556597022804,1.02341449813341,0.965123526861645,0,5.08891989548763,7.63515418846446,1.31403449622095,5.71179872101983,5.11325665223821,0,0,0.0920809889358963,1.03333003348146,2.00300284807389,3.40923478894503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0.183138929636687,0.082509499920588,0,0,4.82051789532479,2.99679226705578,1.3864375540318,0.614014698904518,0.275673144969061,1.07420244868274,1.45016693914229,0.767039646744908,4.27353771104339,0,0,0,0,0.464845549297286,4.7221852024596,0,1.54016790088044,0,0,1.66791797193528,0.143124886741991,0.372158369359667,0,0.38126038784765,0,2.56763392820352,0.318203247925937,2.35484592059769,0.359744915166629,0.274537029736055,1.53156123049392,0.404364963146632,0,0.842516912477962,0.975267478179181,3.41198885483798,0,1.50149902548784,3.95935209470396,0,1.65409603063837,2.65375590096488,0.876901770507525,1.15755106853338,1.9676842561399,0.202910376962704,0.92947049429925,0.281695602532241,0.573645408816206,0.785992328104969,0.35667105148125,0,2.9555068941673,1.97576935775941,1.13841952129715,0.699869440489966,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.796991953004279,0,0,0,0,1.55519793830904,0,0,0,0.493217028184668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0,0,0.769502585037971,0,0,0,0,0,0.549585560411174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0.252746318513952,0,0,0,0.330991955875499,0,0,0.284609546029793,0,0,0,0,0,0.343972064943233,0,0,0,0.193978032976839,0,0.677942222341597,0,0.19871461170299,0,0.195551382734803,0.160317640503067,0.640358984218058,0.19980960958213,0,0,0,0,0.124252535565433,0,0,0.104602846312333,0.101998217636322,0.577901179803038,0,0,0,0,0,0,0.458320848023367,0,0.199679000498991,0.429226048136571,0,0.134366944973453,1.44119953416961,0,0,0,0,0,0,0,0.136203406111576,0.482259445395058,0.275078873194468,0,0,0,0,0,0,0.157363764404994,0,0,0,0.714695326373367,0,0,1.62899880526114,0.864221491201268,0.326587360109409,0,0,0.170388021785422,0.113312091520126,0,0,0,0,0,0,0.320362237703084,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.221858103073705,0.0620964029413835,0,0,0,0.570930667089935,0.470531639396343,0,0,1.64180283175561,3.03827302801392,1.10961172300523,0.757612021100357,2.264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| ||
|short_description=p@chr21:47424225..47424238,+ | |short_description=p@chr21:47424225..47424238,+ | ||
}} | }} |
Latest revision as of 18:44, 28 July 2015
Short description: | p@chr21:47424225..47424238, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr21:47424225..47424238, + |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.99e-19 | 76 |
multi fate stem cell | 4.12e-15 | 427 |
somatic stem cell | 1.44e-14 | 433 |
stem cell | 7.19e-14 | 441 |
muscle precursor cell | 2.16e-11 | 58 |
myoblast | 2.16e-11 | 58 |
multi-potent skeletal muscle stem cell | 2.16e-11 | 58 |
muscle cell | 2.86e-11 | 55 |
stromal cell | 3.80e-11 | 28 |
connective tissue cell | 7.05e-10 | 361 |
electrically responsive cell | 1.49e-09 | 61 |
electrically active cell | 1.49e-09 | 61 |
smooth muscle cell | 4.79e-08 | 43 |
smooth muscle myoblast | 4.79e-08 | 43 |
mesenchymal stem cell of adipose | 1.51e-07 | 8 |
mesenchymal cell | 2.92e-07 | 354 |
fibrocyte | 3.46e-07 | 3 |
tendon cell | 3.46e-07 | 3 |
preadipocyte | 6.30e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.20e-12 | 73 |
somite | 3.44e-12 | 71 |
presomitic mesoderm | 3.44e-12 | 71 |
presumptive segmental plate | 3.44e-12 | 71 |
dermomyotome | 3.44e-12 | 71 |
trunk paraxial mesoderm | 3.44e-12 | 71 |
paraxial mesoderm | 6.49e-12 | 72 |
presumptive paraxial mesoderm | 6.49e-12 | 72 |
multilaminar epithelium | 3.00e-11 | 83 |
skeletal muscle tissue | 3.25e-11 | 62 |
striated muscle tissue | 3.25e-11 | 62 |
myotome | 3.25e-11 | 62 |
adipose tissue | 3.35e-11 | 14 |
muscle tissue | 1.18e-10 | 64 |
musculature | 1.18e-10 | 64 |
musculature of body | 1.18e-10 | 64 |
trunk mesenchyme | 1.62e-10 | 122 |
epithelial vesicle | 2.05e-10 | 78 |
integument | 2.22e-10 | 46 |
integumental system | 2.22e-10 | 46 |
mesenchyme | 3.57e-10 | 160 |
entire embryonic mesenchyme | 3.57e-10 | 160 |
hypodermis | 3.58e-10 | 5 |
connective tissue | 1.35e-09 | 371 |
surface structure | 1.30e-08 | 99 |
articulation | 4.53e-08 | 8 |
skeletal joint | 4.53e-08 | 8 |
articular system | 4.53e-08 | 8 |
unilaminar epithelium | 1.34e-07 | 148 |
dense regular connective tissue | 3.46e-07 | 3 |
tendon | 3.46e-07 | 3 |
regular connective tissue | 3.46e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.67e-08 | 5 |
myotonic disease | 2.67e-08 | 5 |
muscle tissue disease | 2.67e-08 | 5 |
myopathy | 2.67e-08 | 5 |
muscular disease | 2.67e-08 | 5 |
myotonic dystrophy | 2.67e-08 | 5 |