FFCP PHASE1:Hg19::chr2:28582698..28582710,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:28582698..28582710,+ | |||
|coexpression_cluster_id=C1214 | |coexpression_cluster_id=C1214 | ||
|description=CAGE_peak_at_chr2:28582698..28582710,+ | |description=CAGE_peak_at_chr2:28582698..28582710,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002057!1.53e-63!42;CL:0000860!1.58e-58!45;CL:0000738!6.02e-58!140;CL:0000766!9.34e-58!76;CL:0000037!1.17e-53!172;CL:0000566!1.17e-53!172;CL:0000988!3.10e-51!182;CL:0000763!2.27e-49!112;CL:0000049!2.27e-49!112;CL:0002032!1.45e-47!165;CL:0000837!1.45e-47!165;CL:0000557!1.25e-45!71;CL:0000839!8.30e-44!70;CL:0002009!5.50e-41!65;CL:0002194!5.49e-40!63;CL:0000576!5.49e-40!63;CL:0000040!5.49e-40!63;CL:0000559!5.49e-40!63;CL:0002031!6.67e-40!124;CL:0002087!1.08e-38!119;CL:0002393!1.03e-17!9;CL:0002397!1.03e-17!9;CL:0000134!1.14e-16!358;CL:0002320!5.44e-16!365;CL:0000094!1.14e-14!8;CL:0000219!1.32e-13!390;CL:0000048!5.28e-12!430;CL:0000034!9.98e-12!444;CL:0000723!1.40e-11!436;CL:0000081!2.72e-10!11;CL:0000767!2.30e-08!3;CL:0000623!3.35e-08!3;CL:0000825!3.35e-08!3;CL:0000775!5.44e-08!3;CL:0000842!1.53e-07!3;CL:0002274!5.28e-07!5;CL:0000457!5.28e-07!5;CL:0002191!5.28e-07!5;CL:0000097!5.28e-07!5;CL:0000831!5.28e-07!5;CL:0002028!5.28e-07!5;CL:0000784!8.92e-07!3 | |ontology_enrichment_celltype=CL:0002057!1.53e-63!42;CL:0000860!1.58e-58!45;CL:0000738!6.02e-58!140;CL:0000766!9.34e-58!76;CL:0000037!1.17e-53!172;CL:0000566!1.17e-53!172;CL:0000988!3.10e-51!182;CL:0000763!2.27e-49!112;CL:0000049!2.27e-49!112;CL:0002032!1.45e-47!165;CL:0000837!1.45e-47!165;CL:0000557!1.25e-45!71;CL:0000839!8.30e-44!70;CL:0002009!5.50e-41!65;CL:0002194!5.49e-40!63;CL:0000576!5.49e-40!63;CL:0000040!5.49e-40!63;CL:0000559!5.49e-40!63;CL:0002031!6.67e-40!124;CL:0002087!1.08e-38!119;CL:0002393!1.03e-17!9;CL:0002397!1.03e-17!9;CL:0000134!1.14e-16!358;CL:0002320!5.44e-16!365;CL:0000094!1.14e-14!8;CL:0000219!1.32e-13!390;CL:0000048!5.28e-12!430;CL:0000034!9.98e-12!444;CL:0000723!1.40e-11!436;CL:0000081!2.72e-10!11;CL:0000767!2.30e-08!3;CL:0000623!3.35e-08!3;CL:0000825!3.35e-08!3;CL:0000775!5.44e-08!3;CL:0000842!1.53e-07!3;CL:0002274!5.28e-07!5;CL:0000457!5.28e-07!5;CL:0002191!5.28e-07!5;CL:0000097!5.28e-07!5;CL:0000831!5.28e-07!5;CL:0002028!5.28e-07!5;CL:0000784!8.92e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.98e-34;33!CL:0002057;2.98e-34;33!CL:0000094;4.55e-31;8!CL:0000473;1.22e-24;39!CL:0000234;1.22e-24;39!CL:0000081;2.37e-22;11!CL:0000576;5.18e-21;48!CL:0000766;7.86e-20;69!CL:0000767;1.06e-16;3!CL:0000623;3.68e-16;3!CL:0000775;1.28e-15;3!CL:0002087;1.18e-11;104!CL:0000738;1.53e-10;136!CL:0000763;2.08e-09;100!CL:0002393;3.84e-08;6!CL:0002397;3.84e-08;6!CL:0000226;8.48e-08;3!CL:0000842;8.48e-08;3 | |ontology_enrichment_celltype_v019=CL:0000860;2.98e-34;33!CL:0002057;2.98e-34;33!CL:0000094;4.55e-31;8!CL:0000473;1.22e-24;39!CL:0000234;1.22e-24;39!CL:0000081;2.37e-22;11!CL:0000576;5.18e-21;48!CL:0000766;7.86e-20;69!CL:0000767;1.06e-16;3!CL:0000623;3.68e-16;3!CL:0000775;1.28e-15;3!CL:0002087;1.18e-11;104!CL:0000738;1.53e-10;136!CL:0000763;2.08e-09;100!CL:0002393;3.84e-08;6!CL:0002397;3.84e-08;6!CL:0000226;8.48e-08;3!CL:0000842;8.48e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.67e-46,136;CL:0000766,2.27e-44,72;CL:0000860,2.03e-38,42;CL:0002057,2.03e-38,42;CL:0000037,3.39e-36,168;CL:0000988,5.23e-34,177;CL:0002032,1.75e-33,161;CL:0000837,1.75e-33,161;CL:0000473,4.43e-33,48;CL:0000234,4.43e-33,48;CL:0000094,3.34e-31,8;CL:0000763,3.27e-30,108;CL:0000049,3.27e-30,108;CL:0002087,4.37e-30,115;CL:0002031,1.42e-28,120;CL:0002009,1.24e-27,61;CL:0000557,1.45e-27,67;CL:0002194,1.32e-25,59;CL:0000576,1.32e-25,59;CL:0000040,1.32e-25,59;CL:0000559,1.32e-25,59;CL:0000839,3.91e-25,66;CL:0000081,1.89e-22,11;CL:0000767,1.21e-16,3;CL:0000623,2.78e-16,3;CL:0000825,2.78e-16,3;CL:0000775,8.13e-16,3;CL:0000134,1.96e-13,354;CL:0002320,4.94e-13,361;CL:0000219,1.30e-11,386;CL:0000034,3.22e-10,441;CL:0000048,7.14e-10,427;CL:0000723,1.24e-09,433;CL:0000226,8.06e-08,3;CL:0000842,8.06e-08,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.81e-28;42!CL:0000049;6.38e-09;108 | |ontology_enrichment_development_v019=CL:0002057;1.81e-28;42!CL:0000049;6.38e-09;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.05e-39!80;UBERON:0002390!1.74e-38!102;UBERON:0003061!1.74e-38!102;UBERON:0001474!1.56e-35!86;UBERON:0002193!8.11e-34!112;UBERON:0004765!1.91e-28!101;UBERON:0001434!1.91e-28!101;UBERON:0002405!8.90e-25!115;UBERON:0002384!4.58e-15!375;UBERON:0002204!2.60e-14!167;UBERON:0003081!1.05e-12!216 | |ontology_enrichment_uberon=UBERON:0002371!4.05e-39!80;UBERON:0002390!1.74e-38!102;UBERON:0003061!1.74e-38!102;UBERON:0001474!1.56e-35!86;UBERON:0002193!8.11e-34!112;UBERON:0004765!1.91e-28!101;UBERON:0001434!1.91e-28!101;UBERON:0002405!8.90e-25!115;UBERON:0002384!4.58e-15!375;UBERON:0002204!2.60e-14!167;UBERON:0003081!1.05e-12!216 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.67e-24,76;UBERON:0002390,1.03e-23,98;UBERON:0003061,1.03e-23,98;UBERON:0001474,9.98e-22,82;UBERON:0002193,4.78e-21,108;UBERON:0004765,2.11e-19,90;UBERON:0002405,1.24e-18,93;UBERON:0001434,5.12e-17,100;UBERON:0002384,1.75e-12,371;UBERON:0003081,8.37e-09,203;UBERON:0002204,2.07e-08,167 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32700704533794,3.0706351847777,4.33485145285013,0,0,0,0,0,0,2.21598163412751,1.20326668482085,3.68918480216948,0,0,0,1.16318591023652,0.377875943688809,1.21292030593908,1.16214518452842,2.87817521615278,4.02618282163635,0.28769239232215,0.256160706529101,0,3.10271112662957,3.87290810150296,8.12558919566051,1.12945403725563,0.818718450173537,0.898893937780338,2.75475503133812,0.962787081228281,1.27867425159808,0.659702600373432,0.598390972864896,0,0.580418477257168,1.70215567407342,2.4912889959823,0.502497330513487,2.08593167368081,1.08594422352558,1.21079900526674,0.736555271975129,0.632924774881769,0.211255286311942,0.212604299965044,0.628975936525128,0,0,0,0.285012743741249,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,2.29363936875137,0,4.48406850385229,0,0.196709770113833,0.786021525498329,0.822405995998037,0,0,0,0,0,0.589211814949674,0.443067789167242,0.812411591295047,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,0,0.506039384039006,0,0,0,0,0,0,0,0,2.62088766192152,2.13952156626806,1.30341963494519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.75560528296651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,1.86595303986695,0.576479813667846,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74358444383662,1.50939302401662,6.41715181398742,0,0,0,0,0,2.99602809578873,2.99161459204025,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,1.2942852049117,7.4709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.92947049429925,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0.191505370132367,0.211673582723883,0.324621940274555,0,0,0.313359791546046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0.0898683511473268,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0.31900115973192,0,0,0,0.470940769185074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31443677139657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.82455615637551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32700704533794,3.0706351847777,4.33485145285013,0,0,0,0,0,0,2.21598163412751,1.20326668482085,3.68918480216948,0,0,0,1.16318591023652,0.377875943688809,1.21292030593908,1.16214518452842,2.87817521615278,4.02618282163635,0.28769239232215,0.256160706529101,0,3.10271112662957,3.87290810150296,8.12558919566051,1.12945403725563,0.818718450173537,0.898893937780338,2.75475503133812,0.962787081228281,1.27867425159808,0.659702600373432,0.598390972864896,0,0.580418477257168,1.70215567407342,2.4912889959823,0.502497330513487,2.08593167368081,1.08594422352558,1.21079900526674,0.736555271975129,0.632924774881769,0.211255286311942,0.212604299965044,0.628975936525128,0,0,0,0.285012743741249,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,2.29363936875137,0,4.48406850385229,0,0.196709770113833,0.786021525498329,0.822405995998037,0,0,0,0,0,0.589211814949674,0.443067789167242,0.812411591295047,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,0,0.506039384039006,0,0,0,0,0,0,0,0,2.62088766192152,2.13952156626806,1.30341963494519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.75560528296651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,1.86595303986695,0.576479813667846,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74358444383662,1.50939302401662,6.41715181398742,0,0,0,0,0,2.99602809578873,2.99161459204025,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,1.2942852049117,7.4709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.92947049429925,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0.191505370132367,0.211673582723883,0.324621940274555,0,0,0.313359791546046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0.0898683511473268,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0.31900115973192,0,0,0,0.470940769185074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31443677139657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.82455615637551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr2:28582698..28582710,+ | |short_description=p@chr2:28582698..28582710,+ | ||
}} | }} |
Latest revision as of 09:19, 29 July 2015
Short description: | p@chr2:28582698..28582710, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:28582698..28582710, + |
Coexpression cluster: | C1214_Eosinophils_Natural_CD14_Basophils_Neutrophils_Mast_CD34 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.67e-24 | 76 |
hematopoietic system | 1.03e-23 | 98 |
blood island | 1.03e-23 | 98 |
bone element | 9.98e-22 | 82 |
hemolymphoid system | 4.78e-21 | 108 |
skeletal element | 2.11e-19 | 90 |
immune system | 1.24e-18 | 93 |
skeletal system | 5.12e-17 | 100 |
connective tissue | 1.75e-12 | 371 |
lateral plate mesoderm | 8.37e-09 | 203 |
musculoskeletal system | 2.07e-08 | 167 |