FFCP PHASE1:Hg19::chr3:55002066..55002104,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:55002066..55002104,+ | |||
|coexpression_cluster_id=C221 | |coexpression_cluster_id=C221 | ||
|description=CAGE_peak_at_chr3:55002066..55002104,+ | |description=CAGE_peak_at_chr3:55002066..55002104,+ | ||
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|ontology_enrichment_celltype=CL:0000144!1.81e-09!625;CL:0002371!2.85e-09!591;CL:0002620!3.53e-07!23;CL:0000048!5.74e-07!430;CL:0000723!6.42e-07!436 | |ontology_enrichment_celltype=CL:0000144!1.81e-09!625;CL:0002371!2.85e-09!591;CL:0002620!3.53e-07!23;CL:0000048!5.74e-07!430;CL:0000723!6.42e-07!436 | ||
|ontology_enrichment_celltype_v019=CL:0000349;4.60e-26;19!CL:0002541;1.45e-25;3!CL:0002577;8.82e-12;3!CL:0000064;2.19e-11;3!CL:0000067;2.19e-11;3!CL:0005012;2.19e-11;3!CL:0002304;2.19e-11;3!CL:0000342;1.37e-09;1!CL:0002565;1.37e-09;1!CL:0000228;1.99e-09;1!CL:0002372;1.99e-09;1!CL:0000306;6.86e-09;4!CL:0002222;6.86e-09;4!CL:0002224;6.86e-09;4!CL:0000134;2.33e-08;55!CL:0000723;3.27e-07;61!CL:0002537;3.55e-07;5!CL:0000048;5.50e-07;58 | |ontology_enrichment_celltype_v019=CL:0000349;4.60e-26;19!CL:0002541;1.45e-25;3!CL:0002577;8.82e-12;3!CL:0000064;2.19e-11;3!CL:0000067;2.19e-11;3!CL:0005012;2.19e-11;3!CL:0002304;2.19e-11;3!CL:0000342;1.37e-09;1!CL:0002565;1.37e-09;1!CL:0000228;1.99e-09;1!CL:0002372;1.99e-09;1!CL:0000306;6.86e-09;4!CL:0002222;6.86e-09;4!CL:0002224;6.86e-09;4!CL:0000134;2.33e-08;55!CL:0000723;3.27e-07;61!CL:0002537;3.55e-07;5!CL:0000048;5.50e-07;58 | ||
|ontology_enrichment_celltype_v019_2=CL:0000349,4.10e-26,19;CL:0002541,1.23e-25,3;CL:0002577,9.32e-12,3;CL:0000064,1.59e-11,3;CL:0000067,1.59e-11,3;CL:0005012,1.59e-11,3;CL:0002304,1.59e-11,3;CL:0000342,1.56e-09,1;CL:0002565,1.56e-09,1;CL:0000228,1.84e-09,1;CL:0002372,1.84e-09,1;CL:0000306,7.00e-09,4;CL:0002222,7.00e-09,4;CL:0002224,7.00e-09,4;CL:0002537,2.85e-07,5 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!8.98e-14!14;UBERON:0000158!8.98e-14!14;UBERON:0000478!6.26e-11!24;UBERON:0003124!2.82e-09!7;UBERON:0000488!2.41e-07!4 | |ontology_enrichment_uberon=UBERON:0005631!8.98e-14!14;UBERON:0000158!8.98e-14!14;UBERON:0000478!6.26e-11!24;UBERON:0003124!2.82e-09!7;UBERON:0000488!2.41e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.61e-28;10!UBERON:0000158;1.61e-28;10!UBERON:0003124;1.45e-25;3!UBERON:0000920;1.45e-25;3!UBERON:0000478;2.00e-20;24!UBERON:0000488;1.78e-18;4!UBERON:0007625;6.33e-18;11!UBERON:0001801;4.62e-14;14!UBERON:0002203;1.63e-12;6!UBERON:0001768;1.63e-12;6!UBERON:0002200;1.63e-12;6!UBERON:0001778;2.19e-11;3!UBERON:0001775;2.19e-11;3!UBERON:0000305;1.25e-10;7!UBERON:0000019;2.53e-10;19!UBERON:0000047;2.53e-10;19!UBERON:0004088;2.53e-10;19!UBERON:0010230;2.53e-10;19!UBERON:0000970;8.45e-10;20!UBERON:0002506;1.37e-09;1!UBERON:0001769;1.37e-09;1!UBERON:0002104;2.52e-09;21!UBERON:0001456;2.52e-09;21!UBERON:0001987;4.69e-09;4!UBERON:0010077;6.86e-09;4!UBERON:0005389;6.86e-09;4!UBERON:0000484;6.86e-09;4!UBERON:0000965;6.86e-09;4!UBERON:0001803;6.86e-09;4!UBERON:0000020;1.69e-08;23!UBERON:0010371;2.83e-08;31!UBERON:0001032;3.89e-08;24!UBERON:0004456;3.89e-08;24!UBERON:0006876;4.75e-07;11 | |ontology_enrichment_uberon_v019=UBERON:0005631;1.61e-28;10!UBERON:0000158;1.61e-28;10!UBERON:0003124;1.45e-25;3!UBERON:0000920;1.45e-25;3!UBERON:0000478;2.00e-20;24!UBERON:0000488;1.78e-18;4!UBERON:0007625;6.33e-18;11!UBERON:0001801;4.62e-14;14!UBERON:0002203;1.63e-12;6!UBERON:0001768;1.63e-12;6!UBERON:0002200;1.63e-12;6!UBERON:0001778;2.19e-11;3!UBERON:0001775;2.19e-11;3!UBERON:0000305;1.25e-10;7!UBERON:0000019;2.53e-10;19!UBERON:0000047;2.53e-10;19!UBERON:0004088;2.53e-10;19!UBERON:0010230;2.53e-10;19!UBERON:0000970;8.45e-10;20!UBERON:0002506;1.37e-09;1!UBERON:0001769;1.37e-09;1!UBERON:0002104;2.52e-09;21!UBERON:0001456;2.52e-09;21!UBERON:0001987;4.69e-09;4!UBERON:0010077;6.86e-09;4!UBERON:0005389;6.86e-09;4!UBERON:0000484;6.86e-09;4!UBERON:0000965;6.86e-09;4!UBERON:0001803;6.86e-09;4!UBERON:0000020;1.69e-08;23!UBERON:0010371;2.83e-08;31!UBERON:0001032;3.89e-08;24!UBERON:0004456;3.89e-08;24!UBERON:0006876;4.75e-07;11 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,8.79e-36,14;UBERON:0000158,8.79e-36,14;UBERON:0003124,2.88e-29,7;UBERON:0000920,1.23e-25,3;UBERON:0000478,1.83e-20,24;UBERON:0000488,1.36e-18,4;UBERON:0007625,5.49e-18,11;UBERON:0001801,4.13e-14,14;UBERON:0002203,1.36e-12,6;UBERON:0001768,1.36e-12,6;UBERON:0002200,1.36e-12,6;UBERON:0001778,1.59e-11,3;UBERON:0001775,1.59e-11,3;UBERON:0000305,1.15e-10,7;UBERON:0004923,1.55e-10,66;UBERON:0000019,7.83e-10,20;UBERON:0000047,7.83e-10,20;UBERON:0010312,7.83e-10,20;UBERON:0004088,7.83e-10,20;UBERON:0010230,7.83e-10,20;UBERON:0003072,7.83e-10,20;UBERON:0004128,7.83e-10,20;UBERON:0003071,7.83e-10,20;UBERON:0002506,1.56e-09,1;UBERON:0001769,1.56e-09,1;UBERON:0004871,2.14e-09,8;UBERON:0000970,2.35e-09,21;UBERON:0002104,2.35e-09,21;UBERON:0001987,4.89e-09,4;UBERON:0004340,4.89e-09,4;UBERON:0001456,6.37e-09,22;UBERON:0010077,7.00e-09,4;UBERON:0005389,7.00e-09,4;UBERON:0000484,7.00e-09,4;UBERON:0002546,7.00e-09,4;UBERON:0000965,7.00e-09,4;UBERON:0001803,7.00e-09,4;UBERON:0003073,7.00e-09,4;UBERON:0005426,7.00e-09,4;UBERON:0005085,8.95e-09,31;UBERON:0000020,3.66e-08,24;UBERON:0001032,3.66e-08,24;UBERON:0004456,3.66e-08,24;UBERON:0006876,4.33e-07,11 | |||
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|short_description=p@chr3:55002066..55002104,+ | |short_description=p@chr3:55002066..55002104,+ | ||
}} | }} |
Latest revision as of 22:42, 29 July 2015
Short description: | p@chr3:55002066..55002104, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:55002066..55002104, + |
Coexpression cluster: | C221_alveolar_Osteoblast_Myoblast_mesenchymal_liposarcoma_Smooth_hepatocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 4.10e-26 | 19 |
chorionic membrane mesenchymal stem cell | 1.23e-25 | 3 |
placental epithelial cell | 9.32e-12 | 3 |
ciliated cell | 1.59e-11 | 3 |
ciliated epithelial cell | 1.59e-11 | 3 |
multi-ciliated epithelial cell | 1.59e-11 | 3 |
non-pigmented ciliary epithelial cell | 1.59e-11 | 3 |
pigment cell (sensu Vertebrata) | 1.56e-09 | 1 |
iris pigment epithelial cell | 1.56e-09 | 1 |
multinucleate cell | 1.84e-09 | 1 |
myotube | 1.84e-09 | 1 |
crystallin accumulating cell | 7.00e-09 | 4 |
vertebrate lens cell | 7.00e-09 | 4 |
lens epithelial cell | 7.00e-09 | 4 |
amnion mesenchymal stem cell | 2.85e-07 | 5 |