FFCP PHASE1:Hg19::chr4:159963463..159963478,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:159963463..159963478,- | |||
|coexpression_cluster_id=C3983 | |coexpression_cluster_id=C3983 | ||
|description=CAGE_peak_at_chr4:159963463..159963478,- | |description=CAGE_peak_at_chr4:159963463..159963478,- | ||
|id=chr4:159963463..159963478,- | |id=chr4:159963463..159963478,- | ||
|ontology_enrichment_celltype=CL:0002274!3.40e-26!5;CL:0000457!3.40e-26!5;CL:0002191!3.40e-26!5;CL:0000097!3.40e-26!5;CL:0000831!3.40e-26!5;CL:0002028!3.40e-26!5;CL:0000163!1.92e-14!9;CL:0000764!1.20e-11!2;CL:0000765!1.20e-11!2;CL:0000050!1.20e-11!2;CL:0000038!1.20e-11!2;CL:0000558!1.20e-11!2;CL:0000547!1.20e-11!2;CL:0000549!1.20e-11!2;CL:0000550!1.20e-11!2;CL:0000552!1.20e-11!2;CL:0000763!2.35e-10!112;CL:0000049!2.35e-10!112;CL:0000037!4.38e-07!172;CL:0000566!4.38e-07!172 | |ontology_enrichment_celltype=CL:0002274!3.40e-26!5;CL:0000457!3.40e-26!5;CL:0002191!3.40e-26!5;CL:0000097!3.40e-26!5;CL:0000831!3.40e-26!5;CL:0002028!3.40e-26!5;CL:0000163!1.92e-14!9;CL:0000764!1.20e-11!2;CL:0000765!1.20e-11!2;CL:0000050!1.20e-11!2;CL:0000038!1.20e-11!2;CL:0000558!1.20e-11!2;CL:0000547!1.20e-11!2;CL:0000549!1.20e-11!2;CL:0000550!1.20e-11!2;CL:0000552!1.20e-11!2;CL:0000763!2.35e-10!112;CL:0000049!2.35e-10!112;CL:0000037!4.38e-07!172;CL:0000566!4.38e-07!172 | ||
|ontology_enrichment_celltype_v019=CL:0000097;3.05e-44;5!CL:0000163;1.38e-24;9!CL:0000764;5.37e-19;2!CL:0000558;5.37e-19;2!CL:0000037;9.82e-10;1!CL:0001024;9.82e-10;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,2.92e-44,5;CL:0002028,2.92e-44,5;CL:0000163,1.35e-24,9;CL:0000764,5.37e-19,2;CL:0000765,5.37e-19,2;CL:0000050,5.37e-19,2;CL:0000038,5.37e-19,2;CL:0000558,5.37e-19,2;CL:0000547,5.37e-19,2;CL:0000549,5.37e-19,2;CL:0000550,5.37e-19,2;CL:0000552,5.37e-19,2;CL:0000763,2.73e-11,108;CL:0000049,2.73e-11,108;CL:0001024,8.99e-10,1;CL:0000037,1.14e-07,168;CL:0000988,3.69e-07,177;CL:0002032,7.11e-07,161;CL:0000837,7.11e-07,161 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1036!2.07e-21!8;DOID:8692!4.96e-17!31;DOID:1240!4.28e-13!39;DOID:2531!2.34e-11!51;DOID:0060083!2.34e-11!51 | |ontology_enrichment_disease=DOID:1036!2.07e-21!8;DOID:8692!4.96e-17!31;DOID:1240!4.28e-13!39;DOID:2531!2.34e-11!51;DOID:0060083!2.34e-11!51 | ||
|ontology_enrichment_disease_v019=DOID:8552;4.06e-10;1!DOID:8692;1.63e-09;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8552,4.06e-10,1;DOID:8692,1.96e-09,31;DOID:1240,2.09e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0000178!2.79e-26!15;UBERON:0000179!2.79e-26!15;UBERON:0000463!2.79e-26!15;UBERON:0000341!2.20e-10!2;UBERON:0002390!3.89e-09!102;UBERON:0003061!3.89e-09!102;UBERON:0007023!1.06e-08!115;UBERON:0002193!5.02e-08!112 | |ontology_enrichment_uberon=UBERON:0000178!2.79e-26!15;UBERON:0000179!2.79e-26!15;UBERON:0000463!2.79e-26!15;UBERON:0000341!2.20e-10!2;UBERON:0002390!3.89e-09!102;UBERON:0003061!3.89e-09!102;UBERON:0007023!1.06e-08!115;UBERON:0002193!5.02e-08!112 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.46e-45;15!UBERON:0000179;1.46e-45;15!UBERON:0000463;1.46e-45;15!UBERON:0002390;3.17e-23;32!UBERON:0002193;1.11e-12;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.25e-45,15;UBERON:0000179,1.25e-45,15;UBERON:0000463,1.25e-45,15;UBERON:0002390,2.67e-17,98;UBERON:0003061,2.67e-17,98;UBERON:0002193,1.78e-15,108;UBERON:0007023,1.61e-07,114;UBERON:0003081,4.68e-07,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46800219667424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46331618947972,3.96217953059517,17.6228898209656,18.1591141305371,13.2554555097699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.20891481912925,9.93454713894622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.07447609232169,6.88173486428138,7.97506062043828,1.90585420366231,2.87953591160336,7.78167973431261,6.48037724685738,3.96562588147135,0,0,0,0,0,0,0,0,0,0,0,3.36956613736151,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46174797895425,0.270455678475983,0,1.4098700508785,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784901281975124,4.82013877510454,0.451191321234361,0.392125068635479,0.671286347903371,0,1.11255605286265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,1.23138781124008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193373663920732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.23806443146374,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46800219667424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46331618947972,3.96217953059517,17.6228898209656,18.1591141305371,13.2554555097699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.20891481912925,9.93454713894622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.07447609232169,6.88173486428138,7.97506062043828,1.90585420366231,2.87953591160336,7.78167973431261,6.48037724685738,3.96562588147135,0,0,0,0,0,0,0,0,0,0,0,3.36956613736151,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46174797895425,0.270455678475983,0,1.4098700508785,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784901281975124,4.82013877510454,0.451191321234361,0.392125068635479,0.671286347903371,0,1.11255605286265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,1.23138781124008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193373663920732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.23806443146374,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p@chr4:159963463..159963478,- | |short_description=p@chr4:159963463..159963478,- | ||
}} | }} |
Latest revision as of 02:52, 30 July 2015
Short description: | p@chr4:159963463..159963478, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:159963463..159963478, - |
Coexpression cluster: | C3983_Mast_Reticulocytes_blood_Whole_acute_liver_chronic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 2.92e-44 | 5 |
basophil mast progenitor cell | 2.92e-44 | 5 |
endocrine cell | 1.35e-24 | 9 |
erythroid lineage cell | 5.37e-19 | 2 |
erythroblast | 5.37e-19 | 2 |
megakaryocyte-erythroid progenitor cell | 5.37e-19 | 2 |
erythroid progenitor cell | 5.37e-19 | 2 |
reticulocyte | 5.37e-19 | 2 |
proerythroblast | 5.37e-19 | 2 |
basophilic erythroblast | 5.37e-19 | 2 |
polychromatophilic erythroblast | 5.37e-19 | 2 |
orthochromatic erythroblast | 5.37e-19 | 2 |
myeloid cell | 2.73e-11 | 108 |
common myeloid progenitor | 2.73e-11 | 108 |
CD34-positive, CD38-negative hematopoietic stem cell | 8.99e-10 | 1 |
hematopoietic stem cell | 1.14e-07 | 168 |
hematopoietic cell | 3.69e-07 | 177 |
hematopoietic oligopotent progenitor cell | 7.11e-07 | 161 |
hematopoietic multipotent progenitor cell | 7.11e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
blood | 1.25e-45 | 15 |
haemolymphatic fluid | 1.25e-45 | 15 |
organism substance | 1.25e-45 | 15 |
hematopoietic system | 2.67e-17 | 98 |
blood island | 2.67e-17 | 98 |
hemolymphoid system | 1.78e-15 | 108 |
adult organism | 1.61e-07 | 114 |
lateral plate mesoderm | 4.68e-07 | 203 |
Ontology term | p-value | n |
---|---|---|
chronic myeloid leukemia | 4.06e-10 | 1 |
myeloid leukemia | 1.96e-09 | 31 |
leukemia | 2.09e-07 | 39 |