FFCP PHASE1:Hg19::chr4:169956294..169956301,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:169956294..169956301,- | |||
|coexpression_cluster_id=C330 | |coexpression_cluster_id=C330 | ||
|description=CAGE_peak_at_chr4:169956294..169956301,- | |description=CAGE_peak_at_chr4:169956294..169956301,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000322;4.27e-34;3!CL:0002202;2.19e-12;9!CL:0002632;2.19e-12;9!CL:0002368;5.28e-09;13 | |ontology_enrichment_celltype_v019=CL:0000322;4.27e-34;3!CL:0002202;2.19e-12;9!CL:0002632;2.19e-12;9!CL:0002368;5.28e-09;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000322,4.27e-34,3;CL:0002202,2.19e-12,9;CL:0002632,2.19e-12,9;CL:0002368,5.28e-09,13 | |||
|ontology_enrichment_development_v019=UBERON:0003918;3.02e-11;10!UBERON:0007687;3.02e-11;10 | |ontology_enrichment_development_v019=UBERON:0003918;3.02e-11;10!UBERON:0007687;3.02e-11;10 | ||
|ontology_enrichment_disease=DOID:162!4.17e-09!235;DOID:14566!8.27e-09!239;DOID:0050687!2.47e-08!143;DOID:0050619!4.97e-07!1;DOID:1357!4.97e-07!1;DOID:3371!7.82e-07!1;DOID:4549!7.82e-07!1;DOID:5861!7.82e-07!1;DOID:6496!7.82e-07!1;DOID:1036!8.07e-07!8;DOID:6193!8.27e-07!1 | |ontology_enrichment_disease=DOID:162!4.17e-09!235;DOID:14566!8.27e-09!239;DOID:0050687!2.47e-08!143;DOID:0050619!4.97e-07!1;DOID:1357!4.97e-07!1;DOID:3371!7.82e-07!1;DOID:4549!7.82e-07!1;DOID:5861!7.82e-07!1;DOID:6496!7.82e-07!1;DOID:1036!8.07e-07!8;DOID:6193!8.27e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:3910;2.74e-50;2!DOID:3908;4.21e-21;5!DOID:1325;1.65e-15;7!DOID:3904;1.65e-15;7!DOID:3905;2.19e-12;9!DOID:1324;5.55e-08;15!DOID:0050615;1.45e-07;16 | |ontology_enrichment_disease_v019=DOID:3910;2.74e-50;2!DOID:3908;4.21e-21;5!DOID:1325;1.65e-15;7!DOID:3904;1.65e-15;7!DOID:3905;2.19e-12;9!DOID:1324;5.55e-08;15!DOID:0050615;1.45e-07;16 | ||
|ontology_enrichment_disease_v019_2=DOID:3910,2.74e-50,2;DOID:3908,4.21e-21,5;DOID:1325,1.65e-15,7;DOID:3904,1.65e-15,7;DOID:3905,2.19e-12,9;DOID:1324,5.55e-08,15;DOID:0050615,1.45e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0002369!3.17e-08!3;UBERON:0001235!3.17e-08!3;UBERON:0006858!3.17e-08!3;UBERON:0001764!4.97e-07!1;UBERON:0001825!4.97e-07!1 | |ontology_enrichment_uberon=UBERON:0002369!3.17e-08!3;UBERON:0001235!3.17e-08!3;UBERON:0006858!3.17e-08!3;UBERON:0001764!4.97e-07!1;UBERON:0001825!4.97e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;2.74e-50;2!UBERON:0002173;2.74e-50;2!UBERON:0002186;2.74e-50;2!UBERON:0004821;4.27e-34;3!UBERON:0007499;4.27e-34;3!UBERON:0003215;4.27e-34;3!UBERON:0010368;4.27e-34;3!UBERON:0009911;4.27e-34;3!UBERON:0002299;4.27e-34;3!UBERON:0006524;4.27e-34;3!UBERON:0008874;4.27e-34;3!UBERON:0002169;4.27e-34;3!UBERON:0004894;4.27e-34;3!UBERON:0009856;5.56e-26;4!UBERON:0000058;2.73e-11;10!UBERON:0007196;5.55e-08;15!UBERON:0001558;5.55e-08;15 | |ontology_enrichment_uberon_v019=UBERON:0004903;2.74e-50;2!UBERON:0002173;2.74e-50;2!UBERON:0002186;2.74e-50;2!UBERON:0004821;4.27e-34;3!UBERON:0007499;4.27e-34;3!UBERON:0003215;4.27e-34;3!UBERON:0010368;4.27e-34;3!UBERON:0009911;4.27e-34;3!UBERON:0002299;4.27e-34;3!UBERON:0006524;4.27e-34;3!UBERON:0008874;4.27e-34;3!UBERON:0002169;4.27e-34;3!UBERON:0004894;4.27e-34;3!UBERON:0009856;5.56e-26;4!UBERON:0000058;2.73e-11;10!UBERON:0007196;5.55e-08;15!UBERON:0001558;5.55e-08;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,2.74e-50,2;UBERON:0002173,2.74e-50,2;UBERON:0002186,2.74e-50,2;UBERON:0004821,4.27e-34,3;UBERON:0003215,4.27e-34,3;UBERON:0010368,4.27e-34,3;UBERON:0009911,4.27e-34,3;UBERON:0002299,4.27e-34,3;UBERON:0006524,4.27e-34,3;UBERON:0008874,4.27e-34,3;UBERON:0002169,4.27e-34,3;UBERON:0004894,4.27e-34,3;UBERON:0007196,5.55e-08,15;UBERON:0001558,5.55e-08,15 | |||
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|short_description=p@chr4:169956294..169956301,- | |short_description=p@chr4:169956294..169956301,- | ||
}} | }} |
Latest revision as of 03:15, 30 July 2015
Short description: | p@chr4:169956294..169956301, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:169956294..169956301, - |
Coexpression cluster: | C330_bronchioalveolar_oral_signet_embryonic_lymphangiectasia_testis_adult |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 4.27e-34 | 3 |
epithelial cell of tracheobronchial tree | 2.19e-12 | 9 |
epithelial cell of lower respiratory tract | 2.19e-12 | 9 |
respiratory epithelial cell | 5.28e-09 | 13 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 2.74e-50 | 2 |
alveolar duct | 2.74e-50 | 2 |
bronchiole | 2.74e-50 | 2 |
pulmonary alveolus epithelium | 4.27e-34 | 3 |
alveolus | 4.27e-34 | 3 |
pulmonary lobule | 4.27e-34 | 3 |
lobule | 4.27e-34 | 3 |
alveolus of lung | 4.27e-34 | 3 |
alveolar system | 4.27e-34 | 3 |
pulmonary acinus | 4.27e-34 | 3 |
alveolar sac | 4.27e-34 | 3 |
alveolar wall | 4.27e-34 | 3 |
tracheobronchial tree | 5.55e-08 | 15 |
lower respiratory tract | 5.55e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 2.74e-50 | 2 |
non-small cell lung carcinoma | 4.21e-21 | 5 |
bronchus cancer | 1.65e-15 | 7 |
bronchogenic carcinoma | 1.65e-15 | 7 |
lung carcinoma | 2.19e-12 | 9 |
lung cancer | 5.55e-08 | 15 |
respiratory system cancer | 1.45e-07 | 16 |