FFCP PHASE1:Mm9::chr3:88004192..88004201,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene= | |EntrezGene= | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=87 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-343bp_to_ENSMUST00000167043_5end | |||
|cluster_id=chr3:88004192..88004201,+ | |||
|description=CAGE_peak_8_at_ENSMUST00000167043_5end | |||
|id=chr3:88004192..88004201,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.16e-27!23;CL:0000337!1.16e-27!23;CL:0002319!3.90e-19!43;CL:0000221!1.60e-18!44;CL:0000133!1.60e-18!44;CL:0000540!2.69e-17!33;CL:0000047!2.69e-17!33;CL:0000031!2.69e-17!33;CL:0000404!2.69e-17!33;CL:0000055!2.25e-15!50;CL:0000393!1.15e-13!39;CL:0000211!1.15e-13!39;CL:0002321!6.82e-09!70;CL:0000220!6.82e-09!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.32e-42,23;CL:0000337,3.32e-42,23;CL:0000540,5.18e-29,33;CL:0000047,5.18e-29,33;CL:0000031,5.18e-29,33;CL:0000404,5.18e-29,33;CL:0002319,1.73e-25,43;CL:0000221,7.10e-25,44;CL:0000133,7.10e-25,44;CL:0000393,2.47e-24,39;CL:0000211,2.47e-24,39;CL:0002612,3.93e-19,3;CL:0000120,7.84e-19,3;CL:0002321,4.58e-15,70;CL:0002611,3.20e-13,2;CL:0000723,1.53e-09,91;CL:0000048,1.53e-09,91;CL:0002609,3.72e-09,6;CL:0000034,7.57e-09,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.88e-27!73;UBERON:0005743!1.88e-27!73;UBERON:0000073!2.09e-26!75;UBERON:0001016!2.09e-26!75;UBERON:0001049!1.55e-23!52;UBERON:0005068!1.55e-23!52;UBERON:0006241!1.55e-23!52;UBERON:0007135!1.55e-23!52;UBERON:0002020!5.23e-22!34;UBERON:0000955!2.06e-18!50;UBERON:0006238!2.06e-18!50;UBERON:0002616!2.66e-17!49;UBERON:0004121!2.34e-16!102;UBERON:0000924!2.34e-16!102;UBERON:0006601!2.34e-16!102;UBERON:0002791!5.12e-15!29;UBERON:0003528!5.12e-15!29;UBERON:0001893!5.12e-15!29;UBERON:0002346!9.40e-15!71;UBERON:0003075!9.40e-15!71;UBERON:0007284!9.40e-15!71;UBERON:0003080!1.94e-13!40;UBERON:0000033!6.25e-13!63;UBERON:0002780!2.33e-12!39;UBERON:0001890!2.33e-12!39;UBERON:0006240!2.33e-12!39;UBERON:0003076!5.69e-12!12;UBERON:0003057!5.69e-12!12;UBERON:0002240!5.41e-11!6;UBERON:0005174!5.41e-11!6;UBERON:0001137!5.41e-11!6;UBERON:0003056!7.48e-10!49;UBERON:0001948!1.28e-09!5;UBERON:0002315!1.28e-09!5;UBERON:0002420!7.49e-09!8;UBERON:0007245!7.49e-09!8;UBERON:0010009!7.49e-09!8;UBERON:0010011!7.49e-09!8;UBERON:0000454!7.49e-09!8;UBERON:0002298!1.76e-08!6;UBERON:0000956!2.74e-08!21;UBERON:0001869!2.74e-08!21;UBERON:0000203!2.74e-08!21;UBERON:0007811!1.93e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,1.12e-30,5;UBERON:0002315,1.12e-30,5;UBERON:0002240,1.41e-25,6;UBERON:0005174,1.41e-25,6;UBERON:0001137,1.41e-25,6;UBERON:0002257,3.93e-19,3;UBERON:0001017,1.17e-16,73;UBERON:0002020,2.73e-16,34;UBERON:0001016,3.58e-16,75;UBERON:0002256,3.20e-13,2;UBERON:0003076,8.83e-13,12;UBERON:0003057,8.83e-13,12;UBERON:0001049,1.97e-12,52;UBERON:0005068,1.97e-12,52;UBERON:0006241,1.97e-12,52;UBERON:0007135,1.97e-12,52;UBERON:0004121,2.01e-12,95;UBERON:0000924,2.01e-12,95;UBERON:0006601,2.01e-12,95;UBERON:0000073,6.37e-12,54;UBERON:0002346,7.64e-10,64;UBERON:0003075,7.64e-10,64;UBERON:0007284,7.64e-10,64;UBERON:0010371,1.87e-08,73;UBERON:0000489,2.99e-07,21;UBERON:0002259,6.32e-07,1;UBERON:0002314,6.32e-07,1;UBERON:0004061,6.32e-07,1;UBERON:0006777,6.32e-07,1;UBERON:0005882,6.32e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.194429899074283,0,1.43752564364972,0,0,0,0,0,0,1.82084814773638,4.23192783417626,1.90149421051854,0,0,0,0,0,0.599200221036809,0.384218305321555,1.14058573539325,1.75507719831198,1.68259969081106,2.28520787523043,3.3130281142742,0.244981598429908,0.479227355091182,0,0,0.255374676170375,0.46081959976873,0.395658863190582,0.457438218012048,1.56274011167028,0.279182999001381,1.68828783009504,0.45839474333043,2.35702868378934,4.12877874317399,2.60959224155421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585561594023094,0,0,0,0,0,1.49790639404823,0,0.628271760564322,0,0.255715457330331,0.20778804455956,0.648965052271031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630869845692382,0.92614151141356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0.642642632843614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0,0.515559547031063,0,0.755393897389701,0,0,0.453142408984205,0,0.31136204275253,0.399024873401031,0.512200817262403,0,0.209613162627982,0,0,0.206035057238894,0,0.252697211763798,0,0,0,0.384150914429216,0.0574354689556133,0,0,0.38581844092741,0.412085900803307,0.147198920134397,0,0.354951612318675,0,0.290692833264657,0.0941093804153306,0.0846146078916765,0,0,0.135804113845862,0,0.355905054372522,0,0.409231043169689,0,0,0.499621155875892,0,0.214871054048298,0,0,0.231867835620421 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.194429899074283,0,1.43752564364972,0,0,0,0,0,0,1.82084814773638,4.23192783417626,1.90149421051854,0,0,0,0,0,0.599200221036809,0.384218305321555,1.14058573539325,1.75507719831198,1.68259969081106,2.28520787523043,3.3130281142742,0.244981598429908,0.479227355091182,0,0,0.255374676170375,0.46081959976873,0.395658863190582,0.457438218012048,1.56274011167028,0.279182999001381,1.68828783009504,0.45839474333043,2.35702868378934,4.12877874317399,2.60959224155421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585561594023094,0,0,0,0,0,1.49790639404823,0,0.628271760564322,0,0.255715457330331,0.20778804455956,0.648965052271031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630869845692382,0.92614151141356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0.642642632843614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0,0.515559547031063,0,0.755393897389701,0,0,0.453142408984205,0,0.31136204275253,0.399024873401031,0.512200817262403,0,0.209613162627982,0,0,0.206035057238894,0,0.252697211763798,0,0,0,0.384150914429216,0.0574354689556133,0,0,0.38581844092741,0.412085900803307,0.147198920134397,0,0.354951612318675,0,0.290692833264657,0.0941093804153306,0.0846146078916765,0,0,0.135804113845862,0,0.355905054372522,0,0.409231043169689,0,0,0.499621155875892,0,0.214871054048298,0,0,0.231867835620421 | ||
|short_description=p8@ENSMUST00000167043 | |||
}} | }} |
Latest revision as of 03:40, 4 August 2015
Short description: | p8@ENSMUST00000167043 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_ENSMUST00000167043_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | -343bp_to_ENSMUST00000167043_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.32e-42 | 23 |
neuroblast (sensu Vertebrata) | 3.32e-42 | 23 |
neuron | 5.18e-29 | 33 |
neuronal stem cell | 5.18e-29 | 33 |
neuroblast | 5.18e-29 | 33 |
electrically signaling cell | 5.18e-29 | 33 |
neural cell | 1.73e-25 | 43 |
ectodermal cell | 7.10e-25 | 44 |
neurectodermal cell | 7.10e-25 | 44 |
electrically responsive cell | 2.47e-24 | 39 |
electrically active cell | 2.47e-24 | 39 |
neuron of the ventral spinal cord | 3.93e-19 | 3 |
granule cell | 7.84e-19 | 3 |
embryonic cell | 4.58e-15 | 70 |
neuron of the dorsal spinal cord | 3.20e-13 | 2 |
somatic stem cell | 1.53e-09 | 91 |
multi fate stem cell | 1.53e-09 | 91 |
neuron of cerebral cortex | 3.72e-09 | 6 |
stem cell | 7.57e-09 | 97 |
Ontology term | p-value | n |
---|---|---|
regional part of spinal cord | 1.12e-30 | 5 |
gray matter of spinal cord | 1.12e-30 | 5 |
spinal cord | 1.41e-25 | 6 |
dorsal region element | 1.41e-25 | 6 |
dorsum | 1.41e-25 | 6 |
ventral horn of spinal cord | 3.93e-19 | 3 |
central nervous system | 1.17e-16 | 73 |
gray matter | 2.73e-16 | 34 |
nervous system | 3.58e-16 | 75 |
dorsal horn of spinal cord | 3.20e-13 | 2 |
posterior neural tube | 8.83e-13 | 12 |
chordal neural plate | 8.83e-13 | 12 |
neural tube | 1.97e-12 | 52 |
neural rod | 1.97e-12 | 52 |
future spinal cord | 1.97e-12 | 52 |
neural keel | 1.97e-12 | 52 |
ectoderm-derived structure | 2.01e-12 | 95 |
ectoderm | 2.01e-12 | 95 |
presumptive ectoderm | 2.01e-12 | 95 |
regional part of nervous system | 6.37e-12 | 54 |
neurectoderm | 7.64e-10 | 64 |
neural plate | 7.64e-10 | 64 |
presumptive neural plate | 7.64e-10 | 64 |
ecto-epithelium | 1.87e-08 | 73 |
cavitated compound organ | 2.99e-07 | 21 |
corpora quadrigemina | 6.32e-07 | 1 |
midbrain tectum | 6.32e-07 | 1 |
neural tube mantle layer | 6.32e-07 | 1 |
tectal plate | 6.32e-07 | 1 |
neural tube alar plate | 6.32e-07 | 1 |