FFCP PHASE1:Mm9::chr3:88260319..88260363,-: Difference between revisions
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{{FFCP|EntrezGene=20351|HGNC=|MCL_coexpression_id=12|UniProt=D3YWK5,D3YVM6|association_with_transcript=0bp_to_ENSMUST00000123753,ENSMUST00000141471,ENSMUST00000146921_5end|description=CAGE_peak_3_at_Sema4a_5end|id=chr3:88260319..88260363,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002563,4.59e-07,9;CL:0002251,4.59e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!4.80e-23!43;UBERON:0005409!1.56e-22!59;UBERON:0004119!5.20e-22!130;UBERON:0000925!5.20e-22!130;UBERON:0006595!5.20e-22!130;UBERON:0001007!1.37e-21!128;UBERON:0001555!1.37e-21!128;UBERON:0007026!1.37e-21!128;UBERON:0004921!2.73e-20!126;UBERON:0004185!2.73e-20!126;UBERON:0005172!1.07e-12!49;UBERON:0005173!1.07e-12!49;UBERON:0002417!1.07e-12!49;UBERON:0000916!1.07e-12!49;UBERON:0009854!6.53e-12!23;UBERON:0009856!6.53e-12!23;UBERON:0002107!2.80e-11!22;UBERON:0007499!2.80e-11!22;UBERON:0006925!2.80e-11!22;UBERON:0009497!2.80e-11!22;UBERON:0000015!2.80e-11!22;UBERON:0002423!2.80e-11!22;UBERON:0006235!2.80e-11!22;UBERON:0008835!2.80e-11!22;UBERON:0003894!2.80e-11!22;UBERON:0004161!2.80e-11!22;UBERON:0008836!2.80e-11!22;UBERON:0000344!2.46e-10!15;UBERON:0005177!6.05e-10!85;UBERON:0001242!4.78e-09!13;UBERON:0000060!4.78e-09!13;UBERON:0001262!4.78e-09!13;UBERON:0004786!4.78e-09!13;UBERON:0002365!1.01e-08!25;UBERON:0002330!1.01e-08!25;UBERON:0009569!1.10e-08!66;UBERON:0004923!8.91e-08!24;UBERON:0003929!1.53e-07!55;UBERON:0002108!2.03e-07!16;UBERON:0002100!7.64e-07!98;UBERON:0000466!7.88e-07!79|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.12e-22,31;UBERON:0005409,1.01e-18,47;UBERON:0009854,1.12e-13,23;UBERON:0009856,1.12e-13,23;UBERON:0004119,6.16e-13,118;UBERON:0000925,6.16e-13,118;UBERON:0006595,6.16e-13,118;UBERON:0002107,6.17e-13,22;UBERON:0007499,6.17e-13,22;UBERON:0006925,6.17e-13,22;UBERON:0009497,6.17e-13,22;UBERON:0000015,6.17e-13,22;UBERON:0002423,6.17e-13,22;UBERON:0006235,6.17e-13,22;UBERON:0008835,6.17e-13,22;UBERON:0003894,6.17e-13,22;UBERON:0004161,6.17e-13,22;UBERON:0008836,6.17e-13,22;UBERON:0001007,1.45e-12,116;UBERON:0001555,1.45e-12,116;UBERON:0007026,1.45e-12,116;UBERON:0000344,7.83e-12,15;UBERON:0004921,1.78e-11,114;UBERON:0005172,9.02e-11,49;UBERON:0005173,9.02e-11,49;UBERON:0002417,9.02e-11,49;UBERON:0000916,9.02e-11,49;UBERON:0002365,2.19e-10,25;UBERON:0002330,2.19e-10,25;UBERON:0001242,2.53e-10,13;UBERON:0001262,2.53e-10,13;UBERON:0004786,2.53e-10,13;UBERON:0005177,1.01e-08,79;UBERON:0004923,1.14e-07,24;UBERON:0003350,4.59e-07,9;UBERON:0004808,4.59e-07,9;UBERON:0001277,4.59e-07,9;UBERON:0003104,4.80e-07,61;UBERON:0009142,4.80e-07,61|phase1_expression=0,49.2055324771499,41.4049307844478,88.6220139129012,68.1218192727032,17.4594442788365,19.3898491694286,0,0,0,0,0,0,0,0,0,0,0,0,0,9.95006494767516,0,0,36.1582875513099,35.3290292843442,36.1766137392463,20.6765758156356,27.149375318422,70.6887120377711,41.8370015401485,22.1730510655305,0,0,0,7.51014211353314,6.64938581433969,7.55426618170766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.76823835312181,11.185510400758,5.439770669662,19.9690180905992,16.2444104361917,9.85659151614138,15.0275529540974,0,0,0,0,0,0,0,0,0,0,26.3764762151029,0,0,1.73485326766136,3.04465478312141,4.15107895060905,0.904335843315735,0.470354828542819,0.753999547978053,50.1805784500779,0,0,0,0,0,31.6865994070808,0,0,26.5675337416935,0,0,0,0,0,0,0,0,0,0,0.712875546952214,4.22983700074316,19.7123751578266,0,0,0,0,0.452114453507145,0,0,0,0,0,0.567318240503458,0,0,0,0,0,0.398068533636986,0,0,0,0.207125772535502,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,125.559137533843,57.9146740993162,2.13288250535234,1.39342003116263,8.76298736990235,29.6474781196314,39.360913760542,50.4097909198282,22.7773949541366,71.8087442596687,31.668236308834,36.8069473276129,36.0683561170372,17.9763881730844,38.6887109275703,46.7981992147763,0.758671603812327,2.62771579002376,6.76246414038483,6.72049381889537,14.9343415119072,14.4479788974056,19.3503803600227,13.727743762103,47.7276132637779,58.120064207168,17.4907049981418,6.00642380577939,7.27268281918851,5.39669069723649,15.8230894683032,20.9824128984603,30.0458505102075,16.1109836972454,22.0503908414048,26.0833342528677,23.0029130443767,36.8419538191818,23.0907878104775,27.2785188182881,28.7035861635059,36.1832641022525,0.739012760666419,0.568474235311454,0,0,0,0.167506257441816,0.238043640886014,0.195133647857799,0,0,0.159454768657487,0.491589944147214,0.345369963731791,1.59113964439663,0,0,0,0,0,0,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0,1.13552068166615,0.712262414669021,0.325773918707152,1.97964147567043,6.63725691699814,7.04063844849446,8.46505959501303,6.97838795096823,14.1744908582771,11.0676653259814,16.2809824695979,7.27067458955011,8.19943970284859,4.10847785316561,4.21674434299995,6.18813259489121,0,0,0,0,0,0,0,0,2.11204537257339,3.1774810629573,10.1443063105282,0,0.161464426695906,0,0.238744688006273,0.164140899745061,16.3229268512716,0,0,0.82554747185289,0.185194527369712,0.188368457004691,0,0,0,0,0,13.3653886522116,0.790839983952838,4.26970880966382,3.24016022465404,2.92723614420256,5.8957892211468,6.20375993370175,5.20716771069616,8.89970202745701,61.955957233477,0,0,0,0,0,0.129159823477731,0,0.117357238645754,0.39061315453185,0.104859344425711,0,0.576060012515731,0.632022241256357,0,0.102710957164827,0,0.179026695667481,0,0.600977247599844,0,0.302899349844443,0.15241361331,0.100826185136841,0.194915761479505,0.384847366561318,0.818138315270983,0,0,0,0,0.19318959403219,3.37828455812128,5.86085197655248,0.428736758158132,3.00943262421218,0,0,0,0,0,0,0,0,0,0,0.415149390336707,0.798049746802062,0.512200817262403,1.70174701947806,1.88651846365184,3.49302666055027,6.22290837844523,6.79915688888351,6.4183841918363,6.82282471762253,6.08350319736575,3.9611531691076,5.43120743325318,4.22566005872137,5.74354689556133,3.33405583898152,6.2577536010222,6.36600427530227,4.53294490883637,5.7407578852415,4.11443102862498,4.61437096014278,4.29185141905178,6.24989591519013,5.55245344450451,5.753793336634,4.20734337607377,7.3659519202596,6.65440157844723,9.53941861818155,4.27086065247027,5.31924204828043,7.36615877705441,4.33823155320705,2.3148793317737,0,2.10538447600868,3.00819475667618,0,0.220591419119515,0.231867835620421|short_description=p3@Sema4a}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20351 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3YWK5,uniprot:D3YVM6 | |||
|association_with_transcript=0bp_to_ENSMUST00000123753,ENSMUST00000141471,ENSMUST00000146921_5end | |||
|cluster_id=chr3:88260319..88260363,- | |||
|description=CAGE_peak_3_at_Sema4a_5end | |||
|id=chr3:88260319..88260363,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,4.59e-07,9;CL:0002251,4.59e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!4.80e-23!43;UBERON:0005409!1.56e-22!59;UBERON:0004119!5.20e-22!130;UBERON:0000925!5.20e-22!130;UBERON:0006595!5.20e-22!130;UBERON:0001007!1.37e-21!128;UBERON:0001555!1.37e-21!128;UBERON:0007026!1.37e-21!128;UBERON:0004921!2.73e-20!126;UBERON:0004185!2.73e-20!126;UBERON:0005172!1.07e-12!49;UBERON:0005173!1.07e-12!49;UBERON:0002417!1.07e-12!49;UBERON:0000916!1.07e-12!49;UBERON:0009854!6.53e-12!23;UBERON:0009856!6.53e-12!23;UBERON:0002107!2.80e-11!22;UBERON:0007499!2.80e-11!22;UBERON:0006925!2.80e-11!22;UBERON:0009497!2.80e-11!22;UBERON:0000015!2.80e-11!22;UBERON:0002423!2.80e-11!22;UBERON:0006235!2.80e-11!22;UBERON:0008835!2.80e-11!22;UBERON:0003894!2.80e-11!22;UBERON:0004161!2.80e-11!22;UBERON:0008836!2.80e-11!22;UBERON:0000344!2.46e-10!15;UBERON:0005177!6.05e-10!85;UBERON:0001242!4.78e-09!13;UBERON:0000060!4.78e-09!13;UBERON:0001262!4.78e-09!13;UBERON:0004786!4.78e-09!13;UBERON:0002365!1.01e-08!25;UBERON:0002330!1.01e-08!25;UBERON:0009569!1.10e-08!66;UBERON:0004923!8.91e-08!24;UBERON:0003929!1.53e-07!55;UBERON:0002108!2.03e-07!16;UBERON:0002100!7.64e-07!98;UBERON:0000466!7.88e-07!79 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.12e-22,31;UBERON:0005409,1.01e-18,47;UBERON:0009854,1.12e-13,23;UBERON:0009856,1.12e-13,23;UBERON:0004119,6.16e-13,118;UBERON:0000925,6.16e-13,118;UBERON:0006595,6.16e-13,118;UBERON:0002107,6.17e-13,22;UBERON:0007499,6.17e-13,22;UBERON:0006925,6.17e-13,22;UBERON:0009497,6.17e-13,22;UBERON:0000015,6.17e-13,22;UBERON:0002423,6.17e-13,22;UBERON:0006235,6.17e-13,22;UBERON:0008835,6.17e-13,22;UBERON:0003894,6.17e-13,22;UBERON:0004161,6.17e-13,22;UBERON:0008836,6.17e-13,22;UBERON:0001007,1.45e-12,116;UBERON:0001555,1.45e-12,116;UBERON:0007026,1.45e-12,116;UBERON:0000344,7.83e-12,15;UBERON:0004921,1.78e-11,114;UBERON:0005172,9.02e-11,49;UBERON:0005173,9.02e-11,49;UBERON:0002417,9.02e-11,49;UBERON:0000916,9.02e-11,49;UBERON:0002365,2.19e-10,25;UBERON:0002330,2.19e-10,25;UBERON:0001242,2.53e-10,13;UBERON:0001262,2.53e-10,13;UBERON:0004786,2.53e-10,13;UBERON:0005177,1.01e-08,79;UBERON:0004923,1.14e-07,24;UBERON:0003350,4.59e-07,9;UBERON:0004808,4.59e-07,9;UBERON:0001277,4.59e-07,9;UBERON:0003104,4.80e-07,61;UBERON:0009142,4.80e-07,61 | |||
|phase1_expression=0,49.2055324771499,41.4049307844478,88.6220139129012,68.1218192727032,17.4594442788365,19.3898491694286,0,0,0,0,0,0,0,0,0,0,0,0,0,9.95006494767516,0,0,36.1582875513099,35.3290292843442,36.1766137392463,20.6765758156356,27.149375318422,70.6887120377711,41.8370015401485,22.1730510655305,0,0,0,7.51014211353314,6.64938581433969,7.55426618170766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.76823835312181,11.185510400758,5.439770669662,19.9690180905992,16.2444104361917,9.85659151614138,15.0275529540974,0,0,0,0,0,0,0,0,0,0,26.3764762151029,0,0,1.73485326766136,3.04465478312141,4.15107895060905,0.904335843315735,0.470354828542819,0.753999547978053,50.1805784500779,0,0,0,0,0,31.6865994070808,0,0,26.5675337416935,0,0,0,0,0,0,0,0,0,0,0.712875546952214,4.22983700074316,19.7123751578266,0,0,0,0,0.452114453507145,0,0,0,0,0,0.567318240503458,0,0,0,0,0,0.398068533636986,0,0,0,0.207125772535502,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,125.559137533843,57.9146740993162,2.13288250535234,1.39342003116263,8.76298736990235,29.6474781196314,39.360913760542,50.4097909198282,22.7773949541366,71.8087442596687,31.668236308834,36.8069473276129,36.0683561170372,17.9763881730844,38.6887109275703,46.7981992147763,0.758671603812327,2.62771579002376,6.76246414038483,6.72049381889537,14.9343415119072,14.4479788974056,19.3503803600227,13.727743762103,47.7276132637779,58.120064207168,17.4907049981418,6.00642380577939,7.27268281918851,5.39669069723649,15.8230894683032,20.9824128984603,30.0458505102075,16.1109836972454,22.0503908414048,26.0833342528677,23.0029130443767,36.8419538191818,23.0907878104775,27.2785188182881,28.7035861635059,36.1832641022525,0.739012760666419,0.568474235311454,0,0,0,0.167506257441816,0.238043640886014,0.195133647857799,0,0,0.159454768657487,0.491589944147214,0.345369963731791,1.59113964439663,0,0,0,0,0,0,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0,1.13552068166615,0.712262414669021,0.325773918707152,1.97964147567043,6.63725691699814,7.04063844849446,8.46505959501303,6.97838795096823,14.1744908582771,11.0676653259814,16.2809824695979,7.27067458955011,8.19943970284859,4.10847785316561,4.21674434299995,6.18813259489121,0,0,0,0,0,0,0,0,2.11204537257339,3.1774810629573,10.1443063105282,0,0.161464426695906,0,0.238744688006273,0.164140899745061,16.3229268512716,0,0,0.82554747185289,0.185194527369712,0.188368457004691,0,0,0,0,0,13.3653886522116,0.790839983952838,4.26970880966382,3.24016022465404,2.92723614420256,5.8957892211468,6.20375993370175,5.20716771069616,8.89970202745701,61.955957233477,0,0,0,0,0,0.129159823477731,0,0.117357238645754,0.39061315453185,0.104859344425711,0,0.576060012515731,0.632022241256357,0,0.102710957164827,0,0.179026695667481,0,0.600977247599844,0,0.302899349844443,0.15241361331,0.100826185136841,0.194915761479505,0.384847366561318,0.818138315270983,0,0,0,0,0.19318959403219,3.37828455812128,5.86085197655248,0.428736758158132,3.00943262421218,0,0,0,0,0,0,0,0,0,0,0.415149390336707,0.798049746802062,0.512200817262403,1.70174701947806,1.88651846365184,3.49302666055027,6.22290837844523,6.79915688888351,6.4183841918363,6.82282471762253,6.08350319736575,3.9611531691076,5.43120743325318,4.22566005872137,5.74354689556133,3.33405583898152,6.2577536010222,6.36600427530227,4.53294490883637,5.7407578852415,4.11443102862498,4.61437096014278,4.29185141905178,6.24989591519013,5.55245344450451,5.753793336634,4.20734337607377,7.3659519202596,6.65440157844723,9.53941861818155,4.27086065247027,5.31924204828043,7.36615877705441,4.33823155320705,2.3148793317737,0,2.10538447600868,3.00819475667618,0,0.220591419119515,0.231867835620421 | |||
|short_description=p3@Sema4a | |||
}} |
Revision as of 03:56, 4 August 2015
Short description: | p3@Sema4a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Sema4a_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 0bp_to_ENSMUST00000123753, ENSMUST00000141471, ENSMUST00000146921_5end |
EntrezGene: | 20351 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 4.59e-07 | 9 |
epithelial cell of alimentary canal | 4.59e-07 | 9 |