FFCP PHASE1:Mm9::chr2:84491058..84491102,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=105 | |MCL_coexpression_id=105 | ||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:84491058..84491102,+ | |||
|description=CAGE_peak_at_chr2:84491058..84491102,+ | |description=CAGE_peak_at_chr2:84491058..84491102,+ | ||
|id=chr2:84491058..84491102,+ | |id=chr2:84491058..84491102,+ | ||
|ontology_enrichment_celltype=CL:0002563!6.89e-11!9;CL:0002251!6.89e-11!9;CL:0000066!1.63e-09!25;CL:0002076!6.04e-08!15;CL:0000075!7.98e-08!7;CL:0000239!1.18e-07!6;CL:0000677!1.18e-07!6;CL:0000212!1.18e-07!6;CL:0000584!1.18e-07!6;CL:0000144!1.22e-07!121;CL:0000012!1.22e-07!121;CL:0000223!1.36e-07!20;CL:0000548!4.74e-07!115;CL:0000004!4.74e-07!115;CL:0000255!4.74e-07!115 | |ontology_enrichment_celltype=CL:0002563!6.89e-11!9;CL:0002251!6.89e-11!9;CL:0000066!1.63e-09!25;CL:0002076!6.04e-08!15;CL:0000075!7.98e-08!7;CL:0000239!1.18e-07!6;CL:0000677!1.18e-07!6;CL:0000212!1.18e-07!6;CL:0000584!1.18e-07!6;CL:0000144!1.22e-07!121;CL:0000012!1.22e-07!121;CL:0000223!1.36e-07!20;CL:0000548!4.74e-07!115;CL:0000004!4.74e-07!115;CL:0000255!4.74e-07!115 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,4.07e-48,9;CL:0002251,4.07e-48,9;CL:0000066,4.69e-32,25;CL:0002076,1.10e-28,15;CL:0000239,3.21e-28,6;CL:0000677,3.21e-28,6;CL:0000584,3.21e-28,6;CL:0000223,4.29e-27,20;CL:0000075,3.28e-24,7;CL:0002250,8.04e-22,3;CL:0000682,8.39e-10,3;CL:0002321,7.87e-09,70;CL:0000213,2.54e-08,1;CL:0002078,2.54e-08,1;CL:0000115,2.54e-08,1;CL:0002262,2.54e-08,1;CL:1000398,2.54e-08,1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003350!6.89e-11!9;UBERON:0004808!6.89e-11!9;UBERON:0001277!6.89e-11!9;UBERON:0000485!1.02e-09!11 | |ontology_enrichment_uberon=UBERON:0003350!6.89e-11!9;UBERON:0004808!6.89e-11!9;UBERON:0001277!6.89e-11!9;UBERON:0000485!1.02e-09!11 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003350,4.07e-48,9;UBERON:0004808,4.07e-48,9;UBERON:0001277,4.07e-48,9;UBERON:0000485,2.73e-39,11;UBERON:0001242,3.57e-33,13;UBERON:0001262,3.57e-33,13;UBERON:0004786,3.57e-33,13;UBERON:0000344,1.10e-28,15;UBERON:0004923,1.03e-17,24;UBERON:0000160,1.44e-13,31;UBERON:0003929,2.51e-09,55;UBERON:0005409,1.05e-08,47;UBERON:0002394,2.54e-08,1;UBERON:0001281,2.54e-08,1;UBERON:0000353,2.54e-08,1;UBERON:0003497,2.54e-08,1;UBERON:0003909,2.54e-08,1;UBERON:0003928,2.54e-08,1;UBERON:0003835,2.54e-08,1;UBERON:0003513,2.54e-08,1;UBERON:0001280,2.54e-08,1;UBERON:0004647,2.54e-08,1;UBERON:0002294,2.54e-08,1;UBERON:0001173,2.54e-08,1;UBERON:0004912,2.54e-08,1;UBERON:0005171,2.54e-08,1;UBERON:0000490,1.29e-07,66;UBERON:0005911,3.06e-07,69 | |||
|phase1_expression=0,1.74487703819681,0.909998478779072,3.62957053568196,2.50447864973174,1.84667199103079,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22940928106717,1.72269589234506,1.7230479846363,0.215471232685889,0,0,0,0,0.61506478758457,0,8.66554859253824,2.32728503501889,11.2293145944303,0,0,0,0,0,0,0.251793635951155,0.202753862439029,0.183546752161682,0,0,0,0,0,1.43752564364972,0,0,0,0,0,0,0,0.528990979272033,0,0.338844532069132,0,0,0,0,0,0.384218305321555,0,0.270011876663381,0.420649922702764,0,0,0.122490799214954,0,0.919218786610021,0,0,0,0.131886287730194,0.0914876436024097,0,0,0,0.15279824777681,0,0.142371680799103,0.186399445825301,0.075726193333184,0.151143120213571,3.18850937571846,0,0.679971333707751,0,0,0,0,0.340860645156116,0.259786004602869,0.35333957451034,0.14084341977668,0,0,0,0,0.253359865475099,0.505524445014783,0.11418387971906,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0.239630249011841,0,0.381210681219194,0,0,0.125654352112864,0.173824320192276,0.255715457330331,0.41557608911912,0.162241263067758,0.203678727700633,0,0.252722758433675,0,0.130120442962704,0,0.180062129805349,0,0.340182495756639,0.2562274405697,0.0937017245597288,0.258703370739016,0,0,0.351902248327898,0.219195732427575,0,0,0,0,1.40442637462647,0.772043721344145,0.568326998791185,0,0,0,0.23674473558521,0,0,0,0.268273401399619,0,0,0,0,0,0,0,0,0,0,0,0.213288250535234,0.232236671860439,0.128867461322093,0,0.22237804384487,0.190225626112559,0,0,0,0,0.19496408711912,0,0,0.199141273254367,0.569003702859245,0,0,0.203651327845314,0,0.140271639780637,0,0,0,0.123397163921801,0,0,0,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0.390438744296638,0,0.238968797952552,0,0,0,0,0,0,0,0.178065603667255,0,0,0,0,0.604647113929502,0.188605079755898,0,0,0,0,0,0,0,0,0.340439605753788,0,0.129358683782755,0,0,0.178368817602071,0,0.304464949114599,0,0,0,0.16488625294148,0,0.0603129249281559,0,0,0.291480836629851,0,0,0,0,0,0,0,0.679913719975421,0.279902904647316,0.138199973804424,0,0.158167996790568,0.203319467126849,0.108005340821801,0,0,0.269728692769641,0,0,0,0,0,0,0.165458490457098,0,0,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0,0.167884616364078,0,0,0,0,0,0.564751842617067,0,0,0,0,0.755393897389701,0.675022500231806,0.45032120322422,0,0,0.103787347584177,0,0,0,0,0,0,0,0,0,0,0,0,0.128050304809739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154936841185966,0.192906610981141,0,0,0,0.191288332068843,0,0 | |phase1_expression=0,1.74487703819681,0.909998478779072,3.62957053568196,2.50447864973174,1.84667199103079,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22940928106717,1.72269589234506,1.7230479846363,0.215471232685889,0,0,0,0,0.61506478758457,0,8.66554859253824,2.32728503501889,11.2293145944303,0,0,0,0,0,0,0.251793635951155,0.202753862439029,0.183546752161682,0,0,0,0,0,1.43752564364972,0,0,0,0,0,0,0,0.528990979272033,0,0.338844532069132,0,0,0,0,0,0.384218305321555,0,0.270011876663381,0.420649922702764,0,0,0.122490799214954,0,0.919218786610021,0,0,0,0.131886287730194,0.0914876436024097,0,0,0,0.15279824777681,0,0.142371680799103,0.186399445825301,0.075726193333184,0.151143120213571,3.18850937571846,0,0.679971333707751,0,0,0,0,0.340860645156116,0.259786004602869,0.35333957451034,0.14084341977668,0,0,0,0,0.253359865475099,0.505524445014783,0.11418387971906,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0.239630249011841,0,0.381210681219194,0,0,0.125654352112864,0.173824320192276,0.255715457330331,0.41557608911912,0.162241263067758,0.203678727700633,0,0.252722758433675,0,0.130120442962704,0,0.180062129805349,0,0.340182495756639,0.2562274405697,0.0937017245597288,0.258703370739016,0,0,0.351902248327898,0.219195732427575,0,0,0,0,1.40442637462647,0.772043721344145,0.568326998791185,0,0,0,0.23674473558521,0,0,0,0.268273401399619,0,0,0,0,0,0,0,0,0,0,0,0.213288250535234,0.232236671860439,0.128867461322093,0,0.22237804384487,0.190225626112559,0,0,0,0,0.19496408711912,0,0,0.199141273254367,0.569003702859245,0,0,0.203651327845314,0,0.140271639780637,0,0,0,0.123397163921801,0,0,0,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0.390438744296638,0,0.238968797952552,0,0,0,0,0,0,0,0.178065603667255,0,0,0,0,0.604647113929502,0.188605079755898,0,0,0,0,0,0,0,0,0.340439605753788,0,0.129358683782755,0,0,0.178368817602071,0,0.304464949114599,0,0,0,0.16488625294148,0,0.0603129249281559,0,0,0.291480836629851,0,0,0,0,0,0,0,0.679913719975421,0.279902904647316,0.138199973804424,0,0.158167996790568,0.203319467126849,0.108005340821801,0,0,0.269728692769641,0,0,0,0,0,0,0.165458490457098,0,0,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0,0.167884616364078,0,0,0,0,0,0.564751842617067,0,0,0,0,0.755393897389701,0.675022500231806,0.45032120322422,0,0,0.103787347584177,0,0,0,0,0,0,0,0,0,0,0,0,0.128050304809739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154936841185966,0.192906610981141,0,0,0,0.191288332068843,0,0 | ||
|short_description=p@chr2:84491058..84491102,+ | |short_description=p@chr2:84491058..84491102,+ | ||
}} | }} |
Latest revision as of 14:03, 5 August 2015
Short description: | p@chr2:84491058..84491102, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:84491058..84491102, + |
Coexpression cluster: | MCL_coexpression_mm9:105 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 4.07e-48 | 9 |
epithelial cell of alimentary canal | 4.07e-48 | 9 |
epithelial cell | 4.69e-32 | 25 |
endo-epithelial cell | 1.10e-28 | 15 |
brush border epithelial cell | 3.21e-28 | 6 |
gut absorptive cell | 3.21e-28 | 6 |
enterocyte | 3.21e-28 | 6 |
endodermal cell | 4.29e-27 | 20 |
columnar/cuboidal epithelial cell | 3.28e-24 | 7 |
intestinal crypt stem cell | 8.04e-22 | 3 |
M cell of gut | 8.39e-10 | 3 |
embryonic cell | 7.87e-09 | 70 |
lining cell | 2.54e-08 | 1 |
meso-epithelial cell | 2.54e-08 | 1 |
endothelial cell | 2.54e-08 | 1 |
endothelial cell of sinusoid | 2.54e-08 | 1 |
endothelial cell of hepatic sinusoid | 2.54e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
epithelium of mucosa | 4.07e-48 | 9 |
gastrointestinal system epithelium | 4.07e-48 | 9 |
intestinal epithelium | 4.07e-48 | 9 |
simple columnar epithelium | 2.73e-39 | 11 |
intestinal mucosa | 3.57e-33 | 13 |
wall of intestine | 3.57e-33 | 13 |
gastrointestinal system mucosa | 3.57e-33 | 13 |
mucosa | 1.10e-28 | 15 |
organ component layer | 1.03e-17 | 24 |
intestine | 1.44e-13 | 31 |
gut epithelium | 2.51e-09 | 55 |
gastrointestinal system | 1.05e-08 | 47 |
bile duct | 2.54e-08 | 1 |
hepatic sinusoid | 2.54e-08 | 1 |
parenchyma | 2.54e-08 | 1 |
abdomen blood vessel | 2.54e-08 | 1 |
sinusoid | 2.54e-08 | 1 |
digestive system duct | 2.54e-08 | 1 |
abdominal segment blood vessel | 2.54e-08 | 1 |
trunk blood vessel | 2.54e-08 | 1 |
liver parenchyma | 2.54e-08 | 1 |
liver lobule | 2.54e-08 | 1 |
biliary system | 2.54e-08 | 1 |
biliary tree | 2.54e-08 | 1 |
biliary bud | 2.54e-08 | 1 |
hepatic duct | 2.54e-08 | 1 |
unilaminar epithelium | 1.29e-07 | 66 |
endo-epithelium | 3.06e-07 | 69 |