FFCP PHASE1:Mm9::chr3:121948394..121948468,+: Difference between revisions
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{{FFCP|EntrezGene=14630|HGNC=|MCL_coexpression_id=60|UniProt=O09172|association_with_transcript=-6bp_to_ENSMUST00000029769_5end|description=CAGE_peak_3_at_Gclm_5end|id=chr3:121948394..121948468,+|ontology_enrichment_celltype=CL:0000117!6.88e-13!23;CL:0000337!6.88e-13!23;CL:0002319!3.20e-11!43;CL:0000221!3.52e-11!44;CL:0000133!3.52e-11!44;CL:0000540!7.86e-11!33;CL:0000047!7.86e-11!33;CL:0000031!7.86e-11!33;CL:0000404!7.86e-11!33;CL:0000055!7.71e-09!50;CL:0000393!1.96e-08!39;CL:0000211!1.96e-08!39|ontology_enrichment_celltype_v019_2=CL:0000117,6.74e-13,23;CL:0000337,6.74e-13,23;CL:0002319,3.14e-11,43;CL:0000221,3.45e-11,44;CL:0000133,3.45e-11,44;CL:0000540,7.72e-11,33;CL:0000047,7.72e-11,33;CL:0000031,7.72e-11,33;CL:0000404,7.72e-11,33;CL:0000393,1.94e-08,39;CL:0000211,1.94e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.06e-26!73;UBERON:0005743!3.06e-26!73;UBERON:0000073!2.91e-24!75;UBERON:0001016!2.91e-24!75;UBERON:0001049!7.83e-23!52;UBERON:0005068!7.83e-23!52;UBERON:0006241!7.83e-23!52;UBERON:0007135!7.83e-23!52;UBERON:0000955!1.52e-22!50;UBERON:0006238!1.52e-22!50;UBERON:0002616!4.02e-22!49;UBERON:0004121!2.20e-21!102;UBERON:0000924!2.20e-21!102;UBERON:0006601!2.20e-21!102;UBERON:0002346!4.08e-20!71;UBERON:0003075!4.08e-20!71;UBERON:0007284!4.08e-20!71;UBERON:0000033!4.84e-20!63;UBERON:0007811!5.48e-18!86;UBERON:0000153!1.49e-17!94;UBERON:0002020!3.11e-17!34;UBERON:0003080!1.61e-16!40;UBERON:0002780!6.06e-16!39;UBERON:0001890!6.06e-16!39;UBERON:0006240!6.06e-16!39;UBERON:0003056!1.58e-15!49;UBERON:0002791!3.49e-15!29;UBERON:0003528!3.49e-15!29;UBERON:0001893!3.49e-15!29;UBERON:0000956!1.46e-10!21;UBERON:0001869!1.46e-10!21;UBERON:0000203!1.46e-10!21;UBERON:0002619!9.84e-09!17;UBERON:0000025!1.32e-08!114;UBERON:0004111!1.45e-07!122;UBERON:0000475!5.01e-07!200;UBERON:0003076!5.35e-07!12;UBERON:0003057!5.35e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.92e-26,73;UBERON:0000073,1.99e-24,54;UBERON:0001016,2.79e-24,75;UBERON:0001049,7.52e-23,52;UBERON:0005068,7.52e-23,52;UBERON:0006241,7.52e-23,52;UBERON:0007135,7.52e-23,52;UBERON:0004121,7.72e-23,95;UBERON:0000924,7.72e-23,95;UBERON:0006601,7.72e-23,95;UBERON:0002346,2.91e-22,64;UBERON:0003075,2.91e-22,64;UBERON:0007284,2.91e-22,64;UBERON:0010371,7.08e-22,73;UBERON:0000955,2.12e-20,47;UBERON:0006238,2.12e-20,47;UBERON:0002616,5.48e-20,46;UBERON:0002020,3.02e-17,34;UBERON:0003080,1.57e-16,40;UBERON:0010314,2.73e-16,92;UBERON:0002780,5.90e-16,39;UBERON:0001890,5.90e-16,39;UBERON:0006240,5.90e-16,39;UBERON:0003056,1.54e-15,49;UBERON:0003528,3.40e-15,29;UBERON:0002791,3.40e-15,29;UBERON:0001893,3.40e-15,29;UBERON:0000956,1.44e-10,21;UBERON:0001869,1.44e-10,21;UBERON:0000203,1.44e-10,21;UBERON:0002619,9.70e-09,17;UBERON:0000025,1.21e-08,114;UBERON:0004111,1.34e-07,122;UBERON:0003076,5.30e-07,12;UBERON:0003057,5.30e-07,12|phase1_expression=4.48416771893423,0.697950815278722,0,0.60492842261366,0,0.33575854382378,0.467225281191051,5.03580961422147,1.267098499365,0.936258105287974,2.39705155515707,2.23362045186942,4.28001824828014,5.59490575481583,1.66554880907831,1.61980213911861,1.39912375625629,2.20823515750766,2.60517423850904,1.69755860719212,10.8855411393369,4.56738375524072,1.04479915655574,0.47997726838022,2.2940928106717,0,0.430761996159075,0.215471232685889,0.760093677825496,0.252030129759931,0.221730510655305,0.635030673459631,0,0,0.577703239502549,0.498703936075477,0.408338712524738,2.92972141515835,2.3440060335714,1.0470474879476,4.70585190424811,4.78131839470912,3.88408282424923,2.51793635951155,2.53442328048786,3.30384153891027,13.3006528539167,7.41285531693518,8.34807494390993,8.1660557611199,5.87942970826523,7.18762821824858,1.51004345451963,5.80289713609076,6.04968838456435,3.34437266846731,7.44986943840768,3.09403255366465,12.7459370341547,9.52183762689659,12.6766280701236,3.04960078862219,4.4464739805557,7.19919773825119,4.94433181283487,2.1314403448383,5.39280198933128,5.76327457982332,10.7837196800817,11.6105106965254,10.3059231062177,9.14083150092171,5.74258206474195,10.9016811301309,11.1180746381154,16.5459381589804,30.8324466798288,20.8130361078856,17.2039317246993,10.9465618816061,9.60620257825301,15.6274011167028,19.2636269310953,14.069065250792,15.279824777681,13.8475435172624,10.1083893367363,14.3527573285481,1.4387976733305,1.28471652181535,2.02905142091174,3.44169550792555,0,1.61910957491345,1.29955283489534,0.896053774194671,2.52799956237153,4.26075806445144,3.11743205523443,3.18005617059306,4.92951969218382,7.69958864485907,0,21.3320010945999,2.81438353314578,1.01343946190039,2.52762222507392,3.4255163915718,3.10725460376606,4.00793775475027,4.3371331691534,4.26251669636998,4.61230994512117,2.26083960828934,5.64425794251383,3.39299796590124,3.46072954828123,3.32578520915797,0.884610551949874,4.36770494858005,3.3126227769059,3.39412677194655,0,12.8823550685081,17.5935233723302,0.510914110417183,3.35482348616577,1.79970819298022,2.66847476853436,13.4811575464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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:14630 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O09172 | |||
|association_with_transcript=-6bp_to_ENSMUST00000029769_5end | |||
|cluster_id=chr3:121948394..121948468,+ | |||
|description=CAGE_peak_3_at_Gclm_5end | |||
|id=chr3:121948394..121948468,+ | |||
|ontology_enrichment_celltype=CL:0000117!6.88e-13!23;CL:0000337!6.88e-13!23;CL:0002319!3.20e-11!43;CL:0000221!3.52e-11!44;CL:0000133!3.52e-11!44;CL:0000540!7.86e-11!33;CL:0000047!7.86e-11!33;CL:0000031!7.86e-11!33;CL:0000404!7.86e-11!33;CL:0000055!7.71e-09!50;CL:0000393!1.96e-08!39;CL:0000211!1.96e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.74e-13,23;CL:0000337,6.74e-13,23;CL:0002319,3.14e-11,43;CL:0000221,3.45e-11,44;CL:0000133,3.45e-11,44;CL:0000540,7.72e-11,33;CL:0000047,7.72e-11,33;CL:0000031,7.72e-11,33;CL:0000404,7.72e-11,33;CL:0000393,1.94e-08,39;CL:0000211,1.94e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.06e-26!73;UBERON:0005743!3.06e-26!73;UBERON:0000073!2.91e-24!75;UBERON:0001016!2.91e-24!75;UBERON:0001049!7.83e-23!52;UBERON:0005068!7.83e-23!52;UBERON:0006241!7.83e-23!52;UBERON:0007135!7.83e-23!52;UBERON:0000955!1.52e-22!50;UBERON:0006238!1.52e-22!50;UBERON:0002616!4.02e-22!49;UBERON:0004121!2.20e-21!102;UBERON:0000924!2.20e-21!102;UBERON:0006601!2.20e-21!102;UBERON:0002346!4.08e-20!71;UBERON:0003075!4.08e-20!71;UBERON:0007284!4.08e-20!71;UBERON:0000033!4.84e-20!63;UBERON:0007811!5.48e-18!86;UBERON:0000153!1.49e-17!94;UBERON:0002020!3.11e-17!34;UBERON:0003080!1.61e-16!40;UBERON:0002780!6.06e-16!39;UBERON:0001890!6.06e-16!39;UBERON:0006240!6.06e-16!39;UBERON:0003056!1.58e-15!49;UBERON:0002791!3.49e-15!29;UBERON:0003528!3.49e-15!29;UBERON:0001893!3.49e-15!29;UBERON:0000956!1.46e-10!21;UBERON:0001869!1.46e-10!21;UBERON:0000203!1.46e-10!21;UBERON:0002619!9.84e-09!17;UBERON:0000025!1.32e-08!114;UBERON:0004111!1.45e-07!122;UBERON:0000475!5.01e-07!200;UBERON:0003076!5.35e-07!12;UBERON:0003057!5.35e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.92e-26,73;UBERON:0000073,1.99e-24,54;UBERON:0001016,2.79e-24,75;UBERON:0001049,7.52e-23,52;UBERON:0005068,7.52e-23,52;UBERON:0006241,7.52e-23,52;UBERON:0007135,7.52e-23,52;UBERON:0004121,7.72e-23,95;UBERON:0000924,7.72e-23,95;UBERON:0006601,7.72e-23,95;UBERON:0002346,2.91e-22,64;UBERON:0003075,2.91e-22,64;UBERON:0007284,2.91e-22,64;UBERON:0010371,7.08e-22,73;UBERON:0000955,2.12e-20,47;UBERON:0006238,2.12e-20,47;UBERON:0002616,5.48e-20,46;UBERON:0002020,3.02e-17,34;UBERON:0003080,1.57e-16,40;UBERON:0010314,2.73e-16,92;UBERON:0002780,5.90e-16,39;UBERON:0001890,5.90e-16,39;UBERON:0006240,5.90e-16,39;UBERON:0003056,1.54e-15,49;UBERON:0003528,3.40e-15,29;UBERON:0002791,3.40e-15,29;UBERON:0001893,3.40e-15,29;UBERON:0000956,1.44e-10,21;UBERON:0001869,1.44e-10,21;UBERON:0000203,1.44e-10,21;UBERON:0002619,9.70e-09,17;UBERON:0000025,1.21e-08,114;UBERON:0004111,1.34e-07,122;UBERON:0003076,5.30e-07,12;UBERON:0003057,5.30e-07,12 | |||
|phase1_expression=4.48416771893423,0.697950815278722,0,0.60492842261366,0,0.33575854382378,0.467225281191051,5.03580961422147,1.267098499365,0.936258105287974,2.39705155515707,2.23362045186942,4.28001824828014,5.59490575481583,1.66554880907831,1.61980213911861,1.39912375625629,2.20823515750766,2.60517423850904,1.69755860719212,10.8855411393369,4.56738375524072,1.04479915655574,0.47997726838022,2.2940928106717,0,0.430761996159075,0.215471232685889,0.760093677825496,0.252030129759931,0.221730510655305,0.635030673459631,0,0,0.577703239502549,0.498703936075477,0.408338712524738,2.92972141515835,2.3440060335714,1.0470474879476,4.70585190424811,4.78131839470912,3.88408282424923,2.51793635951155,2.53442328048786,3.30384153891027,13.3006528539167,7.41285531693518,8.34807494390993,8.1660557611199,5.87942970826523,7.18762821824858,1.51004345451963,5.80289713609076,6.04968838456435,3.34437266846731,7.44986943840768,3.09403255366465,12.7459370341547,9.52183762689659,12.6766280701236,3.04960078862219,4.4464739805557,7.19919773825119,4.94433181283487,2.1314403448383,5.39280198933128,5.76327457982332,10.7837196800817,11.6105106965254,10.3059231062177,9.14083150092171,5.74258206474195,10.9016811301309,11.1180746381154,16.5459381589804,30.8324466798288,20.8130361078856,17.2039317246993,10.9465618816061,9.60620257825301,15.6274011167028,19.2636269310953,14.069065250792,15.279824777681,13.8475435172624,10.1083893367363,14.3527573285481,1.4387976733305,1.28471652181535,2.02905142091174,3.44169550792555,0,1.61910957491345,1.29955283489534,0.896053774194671,2.52799956237153,4.26075806445144,3.11743205523443,3.18005617059306,4.92951969218382,7.69958864485907,0,21.3320010945999,2.81438353314578,1.01343946190039,2.52762222507392,3.4255163915718,3.10725460376606,4.00793775475027,4.3371331691534,4.26251669636998,4.61230994512117,2.26083960828934,5.64425794251383,3.39299796590124,3.46072954828123,3.32578520915797,0.884610551949874,4.36770494858005,3.3126227769059,3.39412677194655,0,12.8823550685081,17.5935233723302,0.510914110417183,3.35482348616577,1.79970819298022,2.66847476853436,13.481157546434,14.1825186873774,20.8586224507355,10.6032835317289,11.5071955798649,16.4152555202052,10.2211995732687,11.1004906596845,3.73220911830279,6.06534620240819,4.62972082950243,4.68433594665733,5.74755261083682,3.96136685571768,4.82255417074288,7.96027040070536,4.09963904911519,6.09061209638237,4.13925393182425,4.95806383745537,3.21480336285293,6.68614271823006,5.47989331068937,4.72680323683516,4.52727816478817,5.14455341019859,5.57295947091781,3.51106593656617,1.28673953557358,3.6941254921427,5.59239585845855,2.81431271977315,4.14142741360334,3.78791576936336,3.14822770795846,4.31947916084659,3.95307706075693,5.09719462659276,6.18856314545998,5.26591519723137,4.26835406605648,4.78305976320549,3.94739966048397,2.63460138349261,4.42881181909227,6.9395683026162,16.9792610425819,0.991256348951394,0.793351699990633,2.55945900642281,2.32236671860439,5.28356591420583,3.42861991859682,3.33567065767305,2.85338439168839,0.949058123089023,3.45867804920423,3.01602250560323,3.38226002469956,1.75467678407208,0.898819408654221,2.37751854862164,1.1948476395262,5.69003702859245,5.1411830674378,6.76246414038483,3.66572390121566,5.81857461502877,8.13575510727695,7.52514791778662,4.57591458736767,4.55296310739987,3.70191491765402,2.07516838961004,3.17005700860579,1.57247196090562,1.79889689907883,1.21716072833102,0.482354319504834,1.2731292589071,2.01387296215567,1.62135226775035,2.19649130550465,1.43768206527355,2.97712758134803,3.43241440426017,1.26289438973556,0,2.8946611281802,4.80358294433172,3.41084541186873,4.88894929326078,6.62005834523234,8.21415869009757,7.03526281255626,7.85544014923845,8.39074685788535,9.14283835815908,9.7444463445461,9.56728611944923,6.882259218061,6.38934432903814,4.91806799177139,0,2.71952841909355,1.47529281905711,3.86311444826625,15.0917554588524,17.4645413022383,4.26230857979356,2.7771801992481,5.04813151066011,6.24701990874622,7.10897212518236,2.86762557543062,3.7875774594007,5.37845408498782,4.85772842009873,4.67609372658099,4.34816555741176,8.9969968598106,3.12268187458191,12.9987890677096,16.6144698540648,4.61916344323099,0,3.39892890616974,4.83717691143602,3.58349651536206,2.65771703592696,4.30409207121498,3.6179961043551,3.27180356529755,4.27796854061666,3.47640433729398,1.05418608574999,2.06271086496374,3.06395645178409,4.68158844481407,5.43306471887569,7.28745919107414,4.25616560741457,7.13475270408282,6.58196082408484,9.74287837166718,3.75474732901937,4.44847348814022,4.6310963591542,4.61681508236144,9.36493674836252,8.62474826472629,7.28171298419132,5.41664969158702,0.874442509889552,13.5360470467672,2.73393409276564,5.15967169908056,2.77791791054568,1.69531611304222,1.91371918809435,0.915112692826091,3.0596117398894,2.6590775941495,3.86959926652387,0.954670618015114,6.48488786841327,4.26970880966382,3.45617090629764,5.22720740036172,3.71216358368502,5.25970950900801,4.21532624199213,1.30877970992015,1.03691978633434,4.3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| |||
|short_description=p3@Gclm | |||
}} |
Revision as of 23:15, 5 August 2015
Short description: | p3@Gclm |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gclm_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | -6bp_to_ENSMUST00000029769_5end |
EntrezGene: | 14630 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.74e-13 | 23 |
neuroblast (sensu Vertebrata) | 6.74e-13 | 23 |
neural cell | 3.14e-11 | 43 |
ectodermal cell | 3.45e-11 | 44 |
neurectodermal cell | 3.45e-11 | 44 |
neuron | 7.72e-11 | 33 |
neuronal stem cell | 7.72e-11 | 33 |
neuroblast | 7.72e-11 | 33 |
electrically signaling cell | 7.72e-11 | 33 |
electrically responsive cell | 1.94e-08 | 39 |
electrically active cell | 1.94e-08 | 39 |