FFCP PHASE1:Mm9::chr5:111846283..111846326,+: Difference between revisions
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{{FFCP|EntrezGene=433938|HGNC=|MCL_coexpression_id=100|UniProt=|association_with_transcript=-55bp_to_ENSMUST00000138784_5end|description=CAGE_peak_1_at_Mn1_5end|id=chr5:111846283..111846326,+|ontology_enrichment_celltype=CL:0000117!1.18e-07!23;CL:0000337!1.18e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.13e-07,23;CL:0000337,1.13e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003056!1.84e-16!49;UBERON:0000033!5.23e-15!63;UBERON:0003080!5.92e-14!40;UBERON:0002780!6.07e-14!39;UBERON:0001890!6.07e-14!39;UBERON:0006240!6.07e-14!39;UBERON:0001049!2.37e-12!52;UBERON:0005068!2.37e-12!52;UBERON:0006241!2.37e-12!52;UBERON:0007135!2.37e-12!52;UBERON:0002616!2.49e-12!49;UBERON:0000955!2.66e-12!50;UBERON:0006238!2.66e-12!50;UBERON:0002020!1.25e-11!34;UBERON:0002791!1.32e-11!29;UBERON:0003528!1.32e-11!29;UBERON:0001893!1.32e-11!29;UBERON:0002346!1.74e-11!71;UBERON:0003075!1.74e-11!71;UBERON:0007284!1.74e-11!71;UBERON:0001017!2.20e-10!73;UBERON:0005743!2.20e-10!73;UBERON:0004121!5.20e-10!102;UBERON:0000924!5.20e-10!102;UBERON:0006601!5.20e-10!102;UBERON:0000073!2.47e-09!75;UBERON:0001016!2.47e-09!75;UBERON:0000956!2.82e-09!21;UBERON:0001869!2.82e-09!21;UBERON:0000203!2.82e-09!21;UBERON:0004111!3.37e-08!122;UBERON:0000025!3.55e-08!114;UBERON:0000153!1.56e-07!94;UBERON:0007811!4.40e-07!86;UBERON:0002619!5.26e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0003056,1.64e-16,49;UBERON:0003080,5.40e-14,40;UBERON:0002780,5.54e-14,39;UBERON:0001890,5.54e-14,39;UBERON:0006240,5.54e-14,39;UBERON:0002346,5.13e-13,64;UBERON:0003075,5.13e-13,64;UBERON:0007284,5.13e-13,64;UBERON:0000073,1.06e-12,54;UBERON:0002616,1.70e-12,46;UBERON:0000955,1.86e-12,47;UBERON:0006238,1.86e-12,47;UBERON:0010371,2.03e-12,73;UBERON:0001049,2.19e-12,52;UBERON:0005068,2.19e-12,52;UBERON:0006241,2.19e-12,52;UBERON:0007135,2.19e-12,52;UBERON:0010314,4.65e-12,92;UBERON:0002020,1.16e-11,34;UBERON:0003528,1.22e-11,29;UBERON:0002791,1.22e-11,29;UBERON:0001893,1.22e-11,29;UBERON:0004121,1.41e-10,95;UBERON:0000924,1.41e-10,95;UBERON:0006601,1.41e-10,95;UBERON:0001017,3.85e-10,73;UBERON:0000956,2.66e-09,21;UBERON:0001869,2.66e-09,21;UBERON:0000203,2.66e-09,21;UBERON:0001016,5.58e-09,75;UBERON:0004111,3.21e-08,122;UBERON:0000025,3.38e-08,114;UBERON:0002619,5.05e-07,17|phase1_expression=24.8230713012431,0.697950815278722,0.454999239389536,0,0,3.18970616632591,1.63528848416868,0,0.703943610758334,1.17032263160997,0.171217968225505,0,0,0.174840804837995,0,0.404950534779652,0,0,0.411343300817216,0,8.24919914465377,66.3263554021914,45.1875635210358,0.319984845586813,0.68822784320151,0.57423196411502,0,0.430942465371778,0,0,0.221730510655305,0,0,0,0.288851619751275,0.166234645358492,0.204169356262369,0,0,0,0,0,0,55.6463935452052,53.7297735463427,33.7726023977494,32.0780451182696,53.8522136259703,18.4536393496956,11.665793944457,28.1372707466979,35.9381410912429,0,1.45072428402269,0.336093799142464,14.1492689819771,24.0688089548556,27.8462929829819,113.904167463954,105.269204875135,115.991146841631,13.5537812827653,21.3430751066673,0,0,0,26.664409836138,35.348084089583,199.084055632277,194.003533382639,205.066837317597,15.996455126613,15.0190607847097,221.463364980637,236.93000435708,257.381260250806,19.82085857989,14.939418555967,14.7462271925994,60.9314649313496,49.4033275453012,52.6122504262328,19.2636269310953,13.5063026407603,13.9046405476897,24.1595440088408,14.0947963991112,34.8566963693312,0.908714319998209,0.377857800533928,6.37701875143691,12.0459342777394,4.0798280022465,27.5248627735287,22.7421746106684,15.2329141613094,20.7857741794993,0.681721290312231,0.519572009205738,1.41335829804136,19.0138616698519,21.815501160434,76.4415719119937,35.5533351576666,0.216491041011214,0,0,9.02052649780574,0.258937883647172,4.30482203287992,22.3796071528315,13.3964810457342,11.3001593655469,6.78251882486802,11.170927177892,4.64966387919799,2.71914464507811,26.172483602504,18.5768215909474,18.1178871941098,29.8136049921531,12.1218813283806,3.72783522436244,2.63502717310392,1.67557365450764,1.53274233125155,3.59445373517761,0.599902730993408,1.27070227073065,20.0719456802462,71.8275946425244,165.989399141094,34.7648640384553,26.5944075623544,19.9476522777178,25.1473957755024,46.9479467349958,13.0627319140598,4.80173241023982,11.3638602178696,49.4457683258274,30.5769798896519,45.9158431003641,28.031096117443,45.1762354364817,32.2846575117821,35.231848434458,14.7460921321239,16.1675994699632,28.9332302656763,30.6154956045271,26.9610750885917,21.409638190371,16.3678518265418,14.1989674121481,27.2676945541336,0,0,0,16.5700618028402,14.3060896588469,10.6236616261999,18.2293446400612,14.3637889175605,14.6553757243009,10.9290954032692,13.6819434713806,8.87416601990488,11.6837493438571,10.6708851651412,21.2400281010142,17.1053985287639,11.6361561104257,18.2520729514106,17.2437757822584,45.4838386716437,0.330418782983798,5.02456076660734,18.1295012954949,22.5269571704625,20.3610588888907,13.5127961497639,9.78463392917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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:433938 | |||
|HGNC= | |||
|MCL_coexpression_id=100 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-55bp_to_ENSMUST00000138784_5end | |||
|cluster_id=chr5:111846283..111846326,+ | |||
|description=CAGE_peak_1_at_Mn1_5end | |||
|id=chr5:111846283..111846326,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.18e-07!23;CL:0000337!1.18e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.13e-07,23;CL:0000337,1.13e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!1.84e-16!49;UBERON:0000033!5.23e-15!63;UBERON:0003080!5.92e-14!40;UBERON:0002780!6.07e-14!39;UBERON:0001890!6.07e-14!39;UBERON:0006240!6.07e-14!39;UBERON:0001049!2.37e-12!52;UBERON:0005068!2.37e-12!52;UBERON:0006241!2.37e-12!52;UBERON:0007135!2.37e-12!52;UBERON:0002616!2.49e-12!49;UBERON:0000955!2.66e-12!50;UBERON:0006238!2.66e-12!50;UBERON:0002020!1.25e-11!34;UBERON:0002791!1.32e-11!29;UBERON:0003528!1.32e-11!29;UBERON:0001893!1.32e-11!29;UBERON:0002346!1.74e-11!71;UBERON:0003075!1.74e-11!71;UBERON:0007284!1.74e-11!71;UBERON:0001017!2.20e-10!73;UBERON:0005743!2.20e-10!73;UBERON:0004121!5.20e-10!102;UBERON:0000924!5.20e-10!102;UBERON:0006601!5.20e-10!102;UBERON:0000073!2.47e-09!75;UBERON:0001016!2.47e-09!75;UBERON:0000956!2.82e-09!21;UBERON:0001869!2.82e-09!21;UBERON:0000203!2.82e-09!21;UBERON:0004111!3.37e-08!122;UBERON:0000025!3.55e-08!114;UBERON:0000153!1.56e-07!94;UBERON:0007811!4.40e-07!86;UBERON:0002619!5.26e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,1.64e-16,49;UBERON:0003080,5.40e-14,40;UBERON:0002780,5.54e-14,39;UBERON:0001890,5.54e-14,39;UBERON:0006240,5.54e-14,39;UBERON:0002346,5.13e-13,64;UBERON:0003075,5.13e-13,64;UBERON:0007284,5.13e-13,64;UBERON:0000073,1.06e-12,54;UBERON:0002616,1.70e-12,46;UBERON:0000955,1.86e-12,47;UBERON:0006238,1.86e-12,47;UBERON:0010371,2.03e-12,73;UBERON:0001049,2.19e-12,52;UBERON:0005068,2.19e-12,52;UBERON:0006241,2.19e-12,52;UBERON:0007135,2.19e-12,52;UBERON:0010314,4.65e-12,92;UBERON:0002020,1.16e-11,34;UBERON:0003528,1.22e-11,29;UBERON:0002791,1.22e-11,29;UBERON:0001893,1.22e-11,29;UBERON:0004121,1.41e-10,95;UBERON:0000924,1.41e-10,95;UBERON:0006601,1.41e-10,95;UBERON:0001017,3.85e-10,73;UBERON:0000956,2.66e-09,21;UBERON:0001869,2.66e-09,21;UBERON:0000203,2.66e-09,21;UBERON:0001016,5.58e-09,75;UBERON:0004111,3.21e-08,122;UBERON:0000025,3.38e-08,114;UBERON:0002619,5.05e-07,17 | |||
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| |||
|short_description=p1@Mn1 | |||
}} |
Revision as of 00:52, 6 August 2015
Short description: | p1@Mn1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Mn1_5end |
Coexpression cluster: | MCL_coexpression_mm9:100 |
Association with transcript: | -55bp_to_ENSMUST00000138784_5end |
EntrezGene: | 433938 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.13e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.13e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
pre-chordal neural plate | 1.64e-16 | 49 |
anterior neural tube | 5.40e-14 | 40 |
regional part of forebrain | 5.54e-14 | 39 |
forebrain | 5.54e-14 | 39 |
future forebrain | 5.54e-14 | 39 |
neurectoderm | 5.13e-13 | 64 |
neural plate | 5.13e-13 | 64 |
presumptive neural plate | 5.13e-13 | 64 |
regional part of nervous system | 1.06e-12 | 54 |
regional part of brain | 1.70e-12 | 46 |
brain | 1.86e-12 | 47 |
future brain | 1.86e-12 | 47 |
ecto-epithelium | 2.03e-12 | 73 |
neural tube | 2.19e-12 | 52 |
neural rod | 2.19e-12 | 52 |
future spinal cord | 2.19e-12 | 52 |
neural keel | 2.19e-12 | 52 |
structure with developmental contribution from neural crest | 4.65e-12 | 92 |
gray matter | 1.16e-11 | 34 |
brain grey matter | 1.22e-11 | 29 |
regional part of telencephalon | 1.22e-11 | 29 |
telencephalon | 1.22e-11 | 29 |
ectoderm-derived structure | 1.41e-10 | 95 |
ectoderm | 1.41e-10 | 95 |
presumptive ectoderm | 1.41e-10 | 95 |
central nervous system | 3.85e-10 | 73 |
cerebral cortex | 2.66e-09 | 21 |
cerebral hemisphere | 2.66e-09 | 21 |
pallium | 2.66e-09 | 21 |
nervous system | 5.58e-09 | 75 |
anatomical conduit | 3.21e-08 | 122 |
tube | 3.38e-08 | 114 |
regional part of cerebral cortex | 5.05e-07 | 17 |