FFCP PHASE1:Mm9::chr3:154756157..154756204,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=813 | |MCL_coexpression_id=813 | ||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:154756157..154756204,- | |||
|description=CAGE_peak_at_chr3:154756157..154756204,- | |description=CAGE_peak_at_chr3:154756157..154756204,- | ||
|id=chr3:154756157..154756204,- | |id=chr3:154756157..154756204,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!8.60e-13!71;UBERON:0003075!8.60e-13!71;UBERON:0007284!8.60e-13!71;UBERON:0000033!3.84e-12!63;UBERON:0004121!1.23e-11!102;UBERON:0000924!1.23e-11!102;UBERON:0006601!1.23e-11!102;UBERON:0001017!1.96e-11!73;UBERON:0005743!1.96e-11!73;UBERON:0000073!2.04e-11!75;UBERON:0001016!2.04e-11!75;UBERON:0001049!4.87e-10!52;UBERON:0005068!4.87e-10!52;UBERON:0006241!4.87e-10!52;UBERON:0007135!4.87e-10!52;UBERON:0000955!7.59e-10!50;UBERON:0006238!7.59e-10!50;UBERON:0002616!2.02e-09!49;UBERON:0003056!6.02e-09!49;UBERON:0000025!8.68e-08!114;UBERON:0004111!5.75e-07!122;UBERON:0003080!6.76e-07!40 | |ontology_enrichment_uberon=UBERON:0002346!8.60e-13!71;UBERON:0003075!8.60e-13!71;UBERON:0007284!8.60e-13!71;UBERON:0000033!3.84e-12!63;UBERON:0004121!1.23e-11!102;UBERON:0000924!1.23e-11!102;UBERON:0006601!1.23e-11!102;UBERON:0001017!1.96e-11!73;UBERON:0005743!1.96e-11!73;UBERON:0000073!2.04e-11!75;UBERON:0001016!2.04e-11!75;UBERON:0001049!4.87e-10!52;UBERON:0005068!4.87e-10!52;UBERON:0006241!4.87e-10!52;UBERON:0007135!4.87e-10!52;UBERON:0000955!7.59e-10!50;UBERON:0006238!7.59e-10!50;UBERON:0002616!2.02e-09!49;UBERON:0003056!6.02e-09!49;UBERON:0000025!8.68e-08!114;UBERON:0004111!5.75e-07!122;UBERON:0003080!6.76e-07!40 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.22e-13,64;UBERON:0003075,1.22e-13,64;UBERON:0007284,1.22e-13,64;UBERON:0004121,4.83e-12,95;UBERON:0000924,4.83e-12,95;UBERON:0006601,4.83e-12,95;UBERON:0010314,5.21e-12,92;UBERON:0010371,5.90e-12,73;UBERON:0001017,1.90e-11,73;UBERON:0001016,1.98e-11,75;UBERON:0000073,1.49e-10,54;UBERON:0001049,4.78e-10,52;UBERON:0005068,4.78e-10,52;UBERON:0006241,4.78e-10,52;UBERON:0007135,4.78e-10,52;UBERON:0003056,5.93e-09,49;UBERON:0000955,7.86e-09,47;UBERON:0006238,7.86e-09,47;UBERON:0002616,2.03e-08,46;UBERON:0000025,1.02e-07,114;UBERON:0004111,6.70e-07,122;UBERON:0003080,6.74e-07,40 | |||
|phase1_expression=4.00372117761985,0.348975407639361,0.909998478779072,0.30246421130683,0,0.503637815735669,0.233612640595526,0.903863264091034,1.40788722151667,0.936258105287974,1.19852577757853,0.8774937489487,0.684802919724823,0.699363219351979,0.333109761815663,0,0,1.57731082679119,2.74228867211478,1.69755860719212,4.67738095830884,6.45391182805754,7.31359409589019,1.43993180514066,1.37645568640302,0,0.430761996159075,0,0.950117097281869,0,0.886922042621219,4.44521471421742,3.69038872550742,0,2.02196133825892,0.332469290716985,0.816677425049476,0.418531630736908,0,1.0470474879476,0,0,0.485510353031154,7.55380907853464,4.76471576731718,5.32285581268876,3.9119567217402,1.30815093828268,0.659058548203415,2.13872888981712,1.67983705950435,0,0.335565212115473,1.45072428402269,1.34437519656986,5.14518872071894,2.86533439938757,2.57836046138721,1.41621522601718,2.11596391708813,2.53532561402472,0.677689064138264,0.889294796111139,0,1.97773272513395,0,0.898800331555214,3.84218305321555,1.55534418462716,2.02508907497536,2.10324961351382,4.85606673486466,3.75476519617743,2.57230678351403,1.24599112323707,2.75765635983006,3.30347642998166,11.6195477657521,8.1411462625809,2.2420668914133,1.82975287204819,3.64639359389732,4.4669279840221,5.6276261003168,6.1119299110724,4.12480019663135,6.69146899755784,3.35519002485541,4.31639301999149,2.26714680320357,4.05810284182349,1.72084775396277,3.39985666853875,1.07940638327563,2.59910566979068,3.13618820968135,3.23022166303029,5.45377032249785,6.23486411046885,3.5333957451034,3.23939865486365,3.84979432242953,2.54805239706646,0,1.29894624606728,0.760079596425296,1.51657333504435,3.31133251185274,3.10725460376606,2.82040064223167,2.77576522825817,4.56698217468212,2.07553947530453,2.11011696773672,5.40908052824242,1.63366568728578,2.22475470960936,4.04878199375753,1.76922110389975,4.20593809863264,1.32504911076236,1.93950101254089,0,7.02673912827713,8.58731497935166,0.766371165625774,2.75574786363617,3.59941638596045,3.04968544975355,11.5338792341713,6.40500843946077,2.89005009859588,7.64827008846016,11.5071955798649,9.14267396062064,9.24775199486219,4.3790926455636,1.7416975885413,4.29628689337247,2.52530227063769,5.07469727554544,4.36813998423599,5.76198815377118,2.71268672104287,6.5995404176788,6.14945857367279,4.49768277886698,5.95017752699736,2.58681591519411,4.34943984385984,5.10258260075452,2.84954452155847,2.22437799380478,5.2237824978325,3.49829631893504,3.18454826909589,2.80885274925294,2.57347907114715,1.98914449576915,3.31401236056803,2.11073453982987,2.52086886045421,6.15536312521547,3.14822770795846,3.23960937063494,2.09280550275367,2.14618721119695,4.32031766758527,2.96207729844265,1.47750717671186,3.4859588104718,2.63159977365598,3.73235195994786,3.08674763148855,8.83217783969334,3.08713837137853,0.660837565967596,0.528901133327089,4.05247676016945,5.80591679651096,3.35055399437443,1.61346819698674,2.44615848229357,2.47293313946327,0,1.97638745668813,1.75934646160189,4.57599885694647,1.16978452271472,0.898819408654221,1.51296634912286,0.995706366271836,1.70701110857774,3.88444942873078,5.63538678365402,3.66572390121566,1.55161989734101,4.69909993265134,3.73095569033118,4.42830443938806,3.92496819603437,4.81248939295022,2.07516838961004,0.667380422864376,1.17935397067922,2.02375901146368,0.608580364165509,0.964708639009667,1.52775511068852,2.30156909960649,5.35046248357617,1.64736847912849,4.31304619582064,4.46569137202204,2.49630138491648,4.2938409251009,2.87035861635059,5.78932225636041,2.40179147216586,3.60033682363921,4.07412441105065,4.58311731593008,4.45911471748154,3.51763140627813,3.80869825417622,2.34160377429359,3.78324345854858,2.87904096543407,1.75400245523236,1.3109065177259,1.38147985492716,3.18227928879325,3.01582567878545,4.35124547054968,0.491764273019036,1.93155722413313,8.83028244932856,12.0728037189969,5.57378814280696,2.01976741763498,5.67914794949262,6.24701990874622,6.03185513651837,3.58453196928828,4.90157082981267,3.39691836946599,2.83367491172426,7.01414058987149,6.32460444714438,6.10510501201433,2.6968616189571,4.09550888434687,5.70104357737516,3.46437258242324,1.32745138339963,2.91336763385978,2.41858845571801,3.39489143560617,0.885905678642318,3.3817866273832,1.55056975900933,3.63533729477506,2.85197902707777,1.26414703174326,0,2.06271086496374,11.234506989875,4.86164953884538,2.32845630808958,3.42939256050548,5.85222771019503,4.45922044005176,4.93647061806363,3.95804433848979,2.58138878870081,2.75381692122966,1.10264199027481,2.80306630000516,3.71368181400583,3.07595917133595,2.38744688006273,2.29797259643086,2.33184669303881,10.5692422145991,1.36696704638282,1.857481811669,2.96311243791539,1.50694765603753,0.820165366326151,0.686334519619568,1.35982743995084,1.6794174278839,1.10559979043539,1.90934123603023,3.47969592939249,3.65975040828328,2.48412283890143,2.29997125615916,1.74690050996942,4.04593039154462,2.39695021603474,1.30877970992015,2.59229946583586,3.72803587852155,11.2738587736838,5.38259565758324,3.14371131868485,3.50012139019286,4.39143399824286,4.22390313726945,7.51086327332825,4.29674469985035,3.98465508817701,9.66336483304024,9.50499020650956,0.632022241256357,1.21635129174099,2.46506297195585,1.94881234466693,2.32734704367726,1.19208812868759,1.32214994471966,2.21534290761866,1.51449674922221,2.057583779685,1.61321896218945,1.07203668813728,0.962118416403295,2.10378423926824,2.72076460338254,3.10780334723691,2.6017018416748,3.18980771091749,1.54551675225752,2.064507229963,2.19781949120718,1.71494703263253,1.50471631210609,5.64751842617067,5.9842280745933,4.01026859407578,7.38968684077857,10.9613203163303,11.3309084608455,7.42524750254986,8.55610286126019,8.60970577069989,7.24864436452548,4.25528125095124,3.59122386060928,3.58540572083682,3.64660075602441,3.5634237646757,2.75765262675021,3.55594764482584,3.91466608753899,3.20919209591815,3.53776096469316,3.04175159868288,3.2066478035633,3.09016974650612,3.3293079250532,3.0440798546475,2.85776214769844,2.43357084484197,4.82273051159263,4.12085900803307,3.09117732282234,4.4573002810104,3.37204031702741,3.33810665926249,4.50573891560218,4.32903149910521,4.14611578669215,3.47563148458268,2.10455769150274,3.93831930152999,2.80571135828869,2.13543032623513,2.56111654176465,1.22769312950907,4.49316839439301,3.47231899766054,2.74791635731741,3.74290573512653,3.65280791882107,5.16478496585877,2.20591419119516,2.78241402744506 | |phase1_expression=4.00372117761985,0.348975407639361,0.909998478779072,0.30246421130683,0,0.503637815735669,0.233612640595526,0.903863264091034,1.40788722151667,0.936258105287974,1.19852577757853,0.8774937489487,0.684802919724823,0.699363219351979,0.333109761815663,0,0,1.57731082679119,2.74228867211478,1.69755860719212,4.67738095830884,6.45391182805754,7.31359409589019,1.43993180514066,1.37645568640302,0,0.430761996159075,0,0.950117097281869,0,0.886922042621219,4.44521471421742,3.69038872550742,0,2.02196133825892,0.332469290716985,0.816677425049476,0.418531630736908,0,1.0470474879476,0,0,0.485510353031154,7.55380907853464,4.76471576731718,5.32285581268876,3.9119567217402,1.30815093828268,0.659058548203415,2.13872888981712,1.67983705950435,0,0.335565212115473,1.45072428402269,1.34437519656986,5.14518872071894,2.86533439938757,2.57836046138721,1.41621522601718,2.11596391708813,2.53532561402472,0.677689064138264,0.889294796111139,0,1.97773272513395,0,0.898800331555214,3.84218305321555,1.55534418462716,2.02508907497536,2.10324961351382,4.85606673486466,3.75476519617743,2.57230678351403,1.24599112323707,2.75765635983006,3.30347642998166,11.6195477657521,8.1411462625809,2.2420668914133,1.82975287204819,3.64639359389732,4.4669279840221,5.6276261003168,6.1119299110724,4.12480019663135,6.69146899755784,3.35519002485541,4.31639301999149,2.26714680320357,4.05810284182349,1.72084775396277,3.39985666853875,1.07940638327563,2.59910566979068,3.13618820968135,3.23022166303029,5.45377032249785,6.23486411046885,3.5333957451034,3.23939865486365,3.84979432242953,2.54805239706646,0,1.29894624606728,0.760079596425296,1.51657333504435,3.31133251185274,3.10725460376606,2.82040064223167,2.77576522825817,4.56698217468212,2.07553947530453,2.11011696773672,5.40908052824242,1.63366568728578,2.22475470960936,4.04878199375753,1.76922110389975,4.20593809863264,1.32504911076236,1.93950101254089,0,7.02673912827713,8.58731497935166,0.766371165625774,2.75574786363617,3.59941638596045,3.04968544975355,11.5338792341713,6.40500843946077,2.89005009859588,7.64827008846016,11.5071955798649,9.14267396062064,9.24775199486219,4.3790926455636,1.7416975885413,4.29628689337247,2.52530227063769,5.07469727554544,4.36813998423599,5.76198815377118,2.71268672104287,6.5995404176788,6.14945857367279,4.49768277886698,5.95017752699736,2.58681591519411,4.34943984385984,5.10258260075452,2.84954452155847,2.22437799380478,5.2237824978325,3.49829631893504,3.18454826909589,2.80885274925294,2.57347907114715,1.98914449576915,3.31401236056803,2.11073453982987,2.52086886045421,6.15536312521547,3.14822770795846,3.23960937063494,2.09280550275367,2.14618721119695,4.32031766758527,2.96207729844265,1.47750717671186,3.4859588104718,2.63159977365598,3.73235195994786,3.08674763148855,8.83217783969334,3.08713837137853,0.660837565967596,0.528901133327089,4.05247676016945,5.80591679651096,3.35055399437443,1.61346819698674,2.44615848229357,2.47293313946327,0,1.97638745668813,1.75934646160189,4.57599885694647,1.16978452271472,0.898819408654221,1.51296634912286,0.995706366271836,1.70701110857774,3.88444942873078,5.63538678365402,3.66572390121566,1.55161989734101,4.69909993265134,3.73095569033118,4.42830443938806,3.92496819603437,4.81248939295022,2.07516838961004,0.667380422864376,1.17935397067922,2.02375901146368,0.608580364165509,0.964708639009667,1.52775511068852,2.30156909960649,5.35046248357617,1.64736847912849,4.31304619582064,4.46569137202204,2.49630138491648,4.2938409251009,2.87035861635059,5.78932225636041,2.40179147216586,3.60033682363921,4.07412441105065,4.58311731593008,4.45911471748154,3.51763140627813,3.80869825417622,2.34160377429359,3.78324345854858,2.87904096543407,1.75400245523236,1.3109065177259,1.38147985492716,3.18227928879325,3.01582567878545,4.35124547054968,0.491764273019036,1.93155722413313,8.83028244932856,12.0728037189969,5.57378814280696,2.01976741763498,5.67914794949262,6.24701990874622,6.03185513651837,3.58453196928828,4.90157082981267,3.39691836946599,2.83367491172426,7.01414058987149,6.32460444714438,6.10510501201433,2.6968616189571,4.09550888434687,5.70104357737516,3.46437258242324,1.32745138339963,2.91336763385978,2.41858845571801,3.39489143560617,0.885905678642318,3.3817866273832,1.55056975900933,3.63533729477506,2.85197902707777,1.26414703174326,0,2.06271086496374,11.234506989875,4.86164953884538,2.32845630808958,3.42939256050548,5.85222771019503,4.45922044005176,4.93647061806363,3.95804433848979,2.58138878870081,2.75381692122966,1.10264199027481,2.80306630000516,3.71368181400583,3.07595917133595,2.38744688006273,2.29797259643086,2.33184669303881,10.5692422145991,1.36696704638282,1.857481811669,2.96311243791539,1.50694765603753,0.820165366326151,0.686334519619568,1.35982743995084,1.6794174278839,1.10559979043539,1.90934123603023,3.47969592939249,3.65975040828328,2.48412283890143,2.29997125615916,1.74690050996942,4.04593039154462,2.39695021603474,1.30877970992015,2.59229946583586,3.72803587852155,11.2738587736838,5.38259565758324,3.14371131868485,3.50012139019286,4.39143399824286,4.22390313726945,7.51086327332825,4.29674469985035,3.98465508817701,9.66336483304024,9.50499020650956,0.632022241256357,1.21635129174099,2.46506297195585,1.94881234466693,2.32734704367726,1.19208812868759,1.32214994471966,2.21534290761866,1.51449674922221,2.057583779685,1.61321896218945,1.07203668813728,0.962118416403295,2.10378423926824,2.72076460338254,3.10780334723691,2.6017018416748,3.18980771091749,1.54551675225752,2.064507229963,2.19781949120718,1.71494703263253,1.50471631210609,5.64751842617067,5.9842280745933,4.01026859407578,7.38968684077857,10.9613203163303,11.3309084608455,7.42524750254986,8.55610286126019,8.60970577069989,7.24864436452548,4.25528125095124,3.59122386060928,3.58540572083682,3.64660075602441,3.5634237646757,2.75765262675021,3.55594764482584,3.91466608753899,3.20919209591815,3.53776096469316,3.04175159868288,3.2066478035633,3.09016974650612,3.3293079250532,3.0440798546475,2.85776214769844,2.43357084484197,4.82273051159263,4.12085900803307,3.09117732282234,4.4573002810104,3.37204031702741,3.33810665926249,4.50573891560218,4.32903149910521,4.14611578669215,3.47563148458268,2.10455769150274,3.93831930152999,2.80571135828869,2.13543032623513,2.56111654176465,1.22769312950907,4.49316839439301,3.47231899766054,2.74791635731741,3.74290573512653,3.65280791882107,5.16478496585877,2.20591419119516,2.78241402744506 | ||
|short_description=p@chr3:154756157..154756204,- | |short_description=p@chr3:154756157..154756204,- | ||
}} | }} |
Latest revision as of 06:45, 6 August 2015
Short description: | p@chr3:154756157..154756204, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:154756157..154756204, - |
Coexpression cluster: | MCL_coexpression_mm9:813 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.22e-13 | 64 |
neural plate | 1.22e-13 | 64 |
presumptive neural plate | 1.22e-13 | 64 |
ectoderm-derived structure | 4.83e-12 | 95 |
ectoderm | 4.83e-12 | 95 |
presumptive ectoderm | 4.83e-12 | 95 |
structure with developmental contribution from neural crest | 5.21e-12 | 92 |
ecto-epithelium | 5.90e-12 | 73 |
central nervous system | 1.90e-11 | 73 |
nervous system | 1.98e-11 | 75 |
regional part of nervous system | 1.49e-10 | 54 |
neural tube | 4.78e-10 | 52 |
neural rod | 4.78e-10 | 52 |
future spinal cord | 4.78e-10 | 52 |
neural keel | 4.78e-10 | 52 |
pre-chordal neural plate | 5.93e-09 | 49 |
brain | 7.86e-09 | 47 |
future brain | 7.86e-09 | 47 |
regional part of brain | 2.03e-08 | 46 |
tube | 1.02e-07 | 114 |
anatomical conduit | 6.70e-07 | 122 |
anterior neural tube | 6.74e-07 | 40 |