FFCP PHASE1:Hg19::chr20:33865891..33865939,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:33865891..33865939,-
|short_description=p1@EDEM2,p1@MT1P3
|description=CAGE_peak_1_at_EDEM2_5end,CAGE_peak_1_at_MT1P3_5end
|association_with_transcript=0b...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55741 | |EntrezGene=55741 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16120,15877 | |HGNC=16120,15877 | ||
|TSSclassifier=strong | |||
|UniProt=F5GZ44 | |UniProt=F5GZ44 | ||
|association_with_transcript=0bp_to_ENST00000424358,ENST00000433764,ENST00000438751,ENST00000454184,ENST00000455178,ENST00000456350,ENST00000456790,ENST00000540582,uc010zuv.1_5end | |||
|cluster_id=chr20:33865891..33865939,- | |||
|coexpression_cluster_id=C345 | |||
|description=CAGE_peak_1_at_EDEM2_5end,CAGE_peak_1_at_MT1P3_5end | |||
|id=chr20:33865891..33865939,- | |||
|ontology_enrichment_celltype=CL:0000183!4.10e-16!59;CL:0000055!4.04e-15!180;CL:0000680!1.78e-14!57;CL:0000056!1.78e-14!57;CL:0000355!1.78e-14!57;CL:0000192!4.18e-14!42;CL:0000514!4.18e-14!42;CL:0000187!5.04e-14!54;CL:0000222!9.28e-14!119;CL:0000359!1.47e-11!32;CL:0002371!4.83e-11!591;CL:0000393!8.45e-10!60;CL:0000211!8.45e-10!60;CL:0000144!2.65e-09!625;CL:0000325!2.17e-08!39;CL:0000136!3.12e-08!15;CL:0000220!1.44e-07!246;CL:0002321!2.10e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.63e-11;32!CL:0000192;8.28e-11;43!CL:0000187;5.98e-08;55!CL:0000136;1.39e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,5.93e-15,58;CL:0000056,5.93e-15,58;CL:0000355,5.93e-15,58;CL:0000192,1.32e-14,43;CL:0000514,1.32e-14,43;CL:0000187,1.67e-14,55;CL:0000222,3.51e-14,121;CL:0000359,1.47e-11,32;CL:0000393,3.26e-10,61;CL:0000211,3.26e-10,61;CL:0000136,3.12e-08,15;CL:0002321,1.09e-07,250;CL:0000057,6.11e-07,76 | |||
|ontology_enrichment_development_v019=CL:0000514;8.28e-11;43!CL:0000355;3.18e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.36e-15!83;UBERON:0002329!3.36e-15!83;UBERON:0003077!3.36e-15!83;UBERON:0003059!3.36e-15!83;UBERON:0007282!3.36e-15!83;UBERON:0009618!3.36e-15!83;UBERON:0007285!3.36e-15!83;UBERON:0005256!3.76e-14!143;UBERON:0000475!4.20e-14!365;UBERON:0004290!3.17e-13!70;UBERON:0000486!5.38e-13!82;UBERON:0000468!1.91e-12!659;UBERON:0001134!7.23e-12!61;UBERON:0002036!7.23e-12!61;UBERON:0003082!7.23e-12!61;UBERON:0002385!7.50e-12!63;UBERON:0001015!7.50e-12!63;UBERON:0000383!7.50e-12!63;UBERON:0001637!8.71e-12!42;UBERON:0003509!8.71e-12!42;UBERON:0004572!8.71e-12!42;UBERON:0002100!3.28e-11!216;UBERON:0004872!6.24e-11!84;UBERON:0000483!6.57e-11!309;UBERON:0002049!6.68e-11!79;UBERON:0007798!6.68e-11!79;UBERON:0000467!6.85e-11!625;UBERON:0000119!7.98e-11!312;UBERON:0000480!1.09e-10!626;UBERON:0004535!1.41e-10!110;UBERON:0001009!2.14e-10!113;UBERON:0001981!2.77e-10!60;UBERON:0007500!2.77e-10!60;UBERON:0004537!2.77e-10!60;UBERON:0006965!2.77e-10!60;UBERON:0000923!3.25e-10!604;UBERON:0005291!3.25e-10!604;UBERON:0006598!3.25e-10!604;UBERON:0002532!3.25e-10!604;UBERON:0002050!4.38e-10!605;UBERON:0005423!4.38e-10!605;UBERON:0003081!8.69e-10!216;UBERON:0000922!1.24e-09!612;UBERON:0004573!1.49e-09!33;UBERON:0004571!1.49e-09!33;UBERON:0003914!1.51e-09!118;UBERON:0000055!1.53e-09!69;UBERON:0000926!3.31e-09!448;UBERON:0004120!3.31e-09!448;UBERON:0006603!3.31e-09!448;UBERON:0000481!7.55e-09!347;UBERON:0002204!3.14e-08!167;UBERON:0004111!6.36e-07!241;UBERON:0000490!8.71e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.05e-08;33!UBERON:0004571;1.05e-08;33!UBERON:0001637;4.25e-08;42!UBERON:0003509;4.25e-08;42!UBERON:0004572;4.25e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.03e-15,78;UBERON:0007524,1.13e-13,73;UBERON:0002329,1.14e-13,71;UBERON:0003059,1.14e-13,71;UBERON:0007282,1.14e-13,71;UBERON:0004290,1.14e-13,71;UBERON:0009618,1.14e-13,71;UBERON:0003077,1.56e-13,72;UBERON:0007285,1.56e-13,72;UBERON:0000486,2.03e-13,83;UBERON:0000926,2.05e-13,315;UBERON:0004120,2.05e-13,315;UBERON:0006603,2.05e-13,315;UBERON:0001134,2.62e-12,62;UBERON:0002036,2.62e-12,62;UBERON:0003082,2.62e-12,62;UBERON:0002385,2.74e-12,64;UBERON:0001015,2.74e-12,64;UBERON:0000383,2.74e-12,64;UBERON:0001637,8.71e-12,42;UBERON:0003509,8.71e-12,42;UBERON:0004572,8.71e-12,42;UBERON:0000483,2.59e-11,306;UBERON:0003104,2.86e-11,160;UBERON:0009142,2.86e-11,160;UBERON:0000119,3.17e-11,309;UBERON:0004872,1.18e-10,83;UBERON:0002049,1.28e-10,78;UBERON:0007798,1.28e-10,78;UBERON:0005423,1.90e-10,581;UBERON:0002204,2.21e-10,167;UBERON:0004535,2.55e-10,109;UBERON:0000922,2.87e-10,592;UBERON:0001009,3.85e-10,112;UBERON:0005256,4.14e-10,122;UBERON:0007500,5.42e-10,59;UBERON:0001981,5.42e-10,59;UBERON:0004537,5.42e-10,59;UBERON:0006965,5.42e-10,59;UBERON:0002100,1.36e-09,199;UBERON:0004573,1.49e-09,33;UBERON:0004571,1.49e-09,33;UBERON:0002050,2.85e-09,564;UBERON:0000055,2.89e-09,68;UBERON:0003914,3.31e-09,117;UBERON:0000923,6.18e-09,560;UBERON:0010316,6.18e-09,560;UBERON:0005291,6.18e-09,560;UBERON:0006598,6.18e-09,560;UBERON:0010317,6.18e-09,560;UBERON:0002532,6.18e-09,560;UBERON:0003081,1.21e-08,203;UBERON:0000490,3.40e-08,148;UBERON:0004111,8.71e-07,240;UBERON:0005085,9.21e-07,31 | |||
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| ||
|short_description=p1@EDEM2,p1@MT1P3 | |||
}} | }} |
Latest revision as of 19:41, 15 September 2015
Short description: | p1@EDEM2, p1@MT1P3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EDEM2_5end, CAGE_peak_1_at_MT1P3_5end |
Coexpression cluster: | C345_Mesenchymal_Fibroblast_Alveolar_Renal_Pericytes_Hepatic_Smooth |
Association with transcript: | 0bp_to_ENST00000424358, ENST00000433764, ENST00000438751, ENST00000454184, ENST00000455178, ENST00000456350, ENST00000456790, ENST00000540582, uc010zuv.1_5end |
EntrezGene: | EDEM2 |
HGNC: | 15877&submit=Submit 16120, 15877 |
UniProt: | F5GZ44 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 5.93e-15 | 58 |
myoblast | 5.93e-15 | 58 |
multi-potent skeletal muscle stem cell | 5.93e-15 | 58 |
smooth muscle cell | 1.32e-14 | 43 |
smooth muscle myoblast | 1.32e-14 | 43 |
muscle cell | 1.67e-14 | 55 |
mesodermal cell | 3.51e-14 | 121 |
vascular associated smooth muscle cell | 1.47e-11 | 32 |
electrically responsive cell | 3.26e-10 | 61 |
electrically active cell | 3.26e-10 | 61 |
fat cell | 3.12e-08 | 15 |
embryonic cell | 1.09e-07 | 250 |
fibroblast | 6.11e-07 | 76 |