FFCP PHASE1:Hg19::chr2:234160340..234160357,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55054 | |EntrezGene=55054 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21498 | |HGNC=21498 | ||
|TSSclassifier=strong | |||
|UniProt=C9J1B2 | |UniProt=C9J1B2 | ||
|association_with_transcript=0bp_to_ENST00000392020,ENST00000417017,ENST00000474148_5end | |association_with_transcript=0bp_to_ENST00000392020,ENST00000417017,ENST00000474148_5end | ||
|cluster_id=chr2:234160340..234160357,+ | |||
|description=CAGE_peak_2_at_ATG16L1_5end | |description=CAGE_peak_2_at_ATG16L1_5end | ||
|id=chr2:234160340..234160357,+ | |id=chr2:234160340..234160357,+ | ||
|ontology_enrichment_celltype=CL:0000791!6.46e-09!18;CL:0000789!6.46e-09!18;CL:0002420!6.46e-09!18;CL:0002419!6.46e-09!18;CL:0000790!6.46e-09!18;CL:0000084!1.63e-07!25;CL:0000827!1.63e-07!25 | |ontology_enrichment_celltype=CL:0000791!6.46e-09!18;CL:0000789!6.46e-09!18;CL:0002420!6.46e-09!18;CL:0002419!6.46e-09!18;CL:0000790!6.46e-09!18;CL:0000084!1.63e-07!25;CL:0000827!1.63e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.58e-09;18!CL:0000789;2.58e-09;18!CL:0002419;2.58e-09;18!CL:0000084;4.32e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.68e-09,18;CL:0000789,3.68e-09,18;CL:0002420,3.68e-09,18;CL:0002419,3.68e-09,18;CL:0000790,3.68e-09,18;CL:0000084,1.02e-07,25;CL:0000827,1.02e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000790;2.58e-09;18 | |||
|ontology_enrichment_disease=DOID:305!5.77e-11!106;DOID:0050687!2.88e-10!143;DOID:162!2.06e-07!235;DOID:14566!5.61e-07!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.45e-10,106;DOID:0050687,5.70e-10,143;DOID:162,6.01e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0001869!1.70e-09!32;UBERON:0001893!2.70e-09!34;UBERON:0002020!2.95e-09!34;UBERON:0003528!2.95e-09!34;UBERON:0002791!6.65e-09!33;UBERON:0002619!2.13e-08!22;UBERON:0001950!3.56e-08!20;UBERON:0000956!1.18e-07!25;UBERON:0000203!1.18e-07!25;UBERON:0002780!1.86e-07!41;UBERON:0001890!1.86e-07!41;UBERON:0006240!1.86e-07!41;UBERON:0001049!4.40e-07!57;UBERON:0005068!4.40e-07!57;UBERON:0006241!4.40e-07!57;UBERON:0007135!4.40e-07!57;UBERON:0003080!4.86e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.47e-08;32!UBERON:0002619;2.08e-08;22!UBERON:0001950;2.39e-08;20!UBERON:0003528;3.57e-08;34!UBERON:0002020;3.57e-08;34!UBERON:0002791;4.82e-08;32!UBERON:0001893;4.88e-08;34!UBERON:0000956;1.02e-07;25!UBERON:0000203;1.02e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,6.53e-10,32;UBERON:0001893,1.07e-09,34;UBERON:0003528,1.17e-09,34;UBERON:0002020,1.17e-09,34;UBERON:0002791,2.66e-09,32;UBERON:0002619,9.37e-09,22;UBERON:0001950,1.61e-08,20;UBERON:0000073,3.21e-08,53;UBERON:0002616,3.21e-08,53;UBERON:0000956,5.65e-08,25;UBERON:0000203,5.65e-08,25;UBERON:0002780,1.48e-07,41;UBERON:0001890,1.48e-07,41;UBERON:0003080,1.48e-07,41;UBERON:0006240,1.48e-07,41;UBERON:0001049,2.00e-07,56;UBERON:0005068,2.00e-07,56;UBERON:0006241,2.00e-07,56;UBERON:0007135,2.00e-07,56;UBERON:0000955,2.16e-07,68;UBERON:0006238,2.16e-07,68;UBERON:0001016,7.43e-07,89;UBERON:0001017,7.47e-07,81 | |||
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| ||
|short_description=p2@ATG16L1 | |short_description=p2@ATG16L1 | ||
}} | }} |
Latest revision as of 22:47, 15 September 2015
Short description: | p2@ATG16L1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ATG16L1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000392020, ENST00000417017, ENST00000474148_5end |
EntrezGene: | ATG16L1 |
HGNC: | 21498 |
UniProt: | C9J1B2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.68e-09 | 18 |
alpha-beta T cell | 3.68e-09 | 18 |
immature T cell | 3.68e-09 | 18 |
mature T cell | 3.68e-09 | 18 |
immature alpha-beta T cell | 3.68e-09 | 18 |
T cell | 1.02e-07 | 25 |
pro-T cell | 1.02e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
cerebral hemisphere | 6.53e-10 | 32 |
telencephalon | 1.07e-09 | 34 |
brain grey matter | 1.17e-09 | 34 |
gray matter | 1.17e-09 | 34 |
regional part of telencephalon | 2.66e-09 | 32 |
regional part of cerebral cortex | 9.37e-09 | 22 |
neocortex | 1.61e-08 | 20 |
regional part of nervous system | 3.21e-08 | 53 |
regional part of brain | 3.21e-08 | 53 |
cerebral cortex | 5.65e-08 | 25 |
pallium | 5.65e-08 | 25 |
regional part of forebrain | 1.48e-07 | 41 |
forebrain | 1.48e-07 | 41 |
anterior neural tube | 1.48e-07 | 41 |
future forebrain | 1.48e-07 | 41 |
neural tube | 2.00e-07 | 56 |
neural rod | 2.00e-07 | 56 |
future spinal cord | 2.00e-07 | 56 |
neural keel | 2.00e-07 | 56 |
brain | 2.16e-07 | 68 |
future brain | 2.16e-07 | 68 |
nervous system | 7.43e-07 | 89 |
central nervous system | 7.47e-07 | 81 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.45e-10 | 106 |
cell type cancer | 5.70e-10 | 143 |
cancer | 6.01e-07 | 235 |