FFCP PHASE1:Hg19::chr4:151502911..151502924,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=987 | |EntrezGene=987 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1742 | |HGNC=1742 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-37bp_to_ENST00000503716,uc003ils.3_5end | |association_with_transcript=-37bp_to_ENST00000503716,uc003ils.3_5end | ||
|cluster_id=chr4:151502911..151502924,- | |||
|coexpression_cluster_id=C1272 | |||
|description=CAGE_peak_5_at_LRBA_5end | |description=CAGE_peak_5_at_LRBA_5end | ||
|id=chr4:151502911..151502924,- | |id=chr4:151502911..151502924,- | ||
|ontology_enrichment_celltype=CL:0000306!1.54e-12!4;CL:0002222!1.54e-12!4;CL:0002224!1.54e-12!4;CL:0000064!5.12e-10!3;CL:0005012!5.12e-10!3;CL:0000067!5.12e-10!3;CL:0002304!5.12e-10!3;CL:0002586!2.78e-09!3;CL:0002504!3.30e-09!3;CL:1000279!3.30e-09!3;CL:1000280!3.30e-09!3;CL:0000153!8.21e-08!9;CL:0000447!8.21e-08!9;CL:0000149!4.72e-07!4 | |ontology_enrichment_celltype=CL:0000306!1.54e-12!4;CL:0002222!1.54e-12!4;CL:0002224!1.54e-12!4;CL:0000064!5.12e-10!3;CL:0005012!5.12e-10!3;CL:0000067!5.12e-10!3;CL:0002304!5.12e-10!3;CL:0002586!2.78e-09!3;CL:0002504!3.30e-09!3;CL:1000279!3.30e-09!3;CL:1000280!3.30e-09!3;CL:0000153!8.21e-08!9;CL:0000447!8.21e-08!9;CL:0000149!4.72e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000333;6.55e-17;5!CL:0002556;1.89e-13;6!CL:0000064;1.18e-12;3!CL:0000067;1.18e-12;3!CL:0005012;1.18e-12;3!CL:0002304;1.18e-12;3!CL:0000306;1.03e-09;4!CL:0002222;1.03e-09;4!CL:0002224;1.03e-09;4!CL:0000062;1.98e-09;9!CL:0002552;8.61e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002556,1.89e-13,6;CL:0000064,1.68e-12,3;CL:0000067,1.68e-12,3;CL:0005012,1.68e-12,3;CL:0002304,1.68e-12,3;CL:0000306,1.07e-09,4;CL:0002222,1.07e-09,4;CL:0002224,1.07e-09,4;CL:0002552,6.54e-08,5;CL:0000062,8.63e-08,11;CL:0000375,8.63e-08,11;CL:0000335,8.63e-08,11 | |||
|ontology_enrichment_development_v019=UBERON:0003099;2.59e-10;1!UBERON:0003852;2.59e-10;1!CL:0000335;8.42e-08;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;3.46e-14;6!DOID:171;1.03e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,3.17e-14,6;DOID:171,9.76e-09,10 | |||
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|ontology_enrichment_uberon_v019=UBERON:0007625;1.09e-19;11!UBERON:0000013;6.55e-17;5!UBERON:0002410;6.55e-17;5!UBERON:0001444;4.05e-15;48!UBERON:0001456;1.45e-14;21!UBERON:0001758;1.89e-13;6!UBERON:0003672;1.89e-13;6!UBERON:0011137;7.86e-13;11!UBERON:0010323;7.86e-13;11!UBERON:0001778;1.18e-12;3!UBERON:0001775;1.18e-12;3!UBERON:0000033;7.22e-12;50!UBERON:0003129;1.31e-11;7!UBERON:0000019;2.35e-11;19!UBERON:0000047;2.35e-11;19!UBERON:0004088;2.35e-11;19!UBERON:0010230;2.35e-11;19!UBERON:0007811;5.34e-11;52!UBERON:0000970;8.84e-11;20!UBERON:0001434;1.42e-10;36!UBERON:0005705;2.59e-10;1!UBERON:0008193;2.59e-10;1!UBERON:0010912;2.59e-10;1!UBERON:0002514;2.59e-10;1!UBERON:0003457;2.59e-10;1!UBERON:0008907;2.59e-10;1!UBERON:0008001;2.59e-10;1!UBERON:0007213;2.59e-10;1!UBERON:0009891;2.59e-10;1!UBERON:0007914;2.59e-10;1!UBERON:0007375;2.59e-10;1!UBERON:0003323;2.59e-10;1!UBERON:0010258;2.59e-10;1!UBERON:0005253;2.59e-10;1!UBERON:0007842;2.59e-10;1!UBERON:0002397;2.59e-10;1!UBERON:0003113;2.59e-10;1!UBERON:0003277;2.59e-10;1!UBERON:0001709;2.59e-10;1!UBERON:0002244;2.59e-10;1!UBERON:0005620;2.59e-10;1!UBERON:0010364;2.59e-10;1!UBERON:0004288;2.59e-10;1!UBERON:0002104;2.93e-10;21!UBERON:0001801;3.16e-10;14!UBERON:0010077;1.03e-09;4!UBERON:0005389;1.03e-09;4!UBERON:0000488;1.03e-09;4!UBERON:0000484;1.03e-09;4!UBERON:0000965;1.03e-09;4!UBERON:0001803;1.03e-09;4!UBERON:0000010;1.25e-09;8!UBERON:0000153;2.29e-09;54!UBERON:0000020;2.36e-09;23!UBERON:0001032;5.88e-09;24!UBERON:0004456;5.88e-09;24!UBERON:0000075;7.06e-09;16!UBERON:0001474;4.31e-08;18!UBERON:0002108;8.61e-08;4!UBERON:0000165;1.59e-07;28!UBERON:0002203;9.41e-07;6!UBERON:0001768;9.41e-07;6!UBERON:0002200;9.41e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001444,1.64e-19,49;UBERON:0007625,1.89e-19,11;UBERON:0000013,5.90e-17,5;UBERON:0002410,5.90e-17,5;UBERON:0000033,7.41e-17,56;UBERON:0000153,4.67e-15,62;UBERON:0007811,4.67e-15,62;UBERON:0001456,9.81e-14,22;UBERON:0001758,1.89e-13,6;UBERON:0003672,1.89e-13,6;UBERON:0010323,8.12e-13,11;UBERON:0001778,1.68e-12,3;UBERON:0001775,1.68e-12,3;UBERON:0003129,1.31e-11,7;UBERON:0000019,1.18e-10,20;UBERON:0000047,1.18e-10,20;UBERON:0010312,1.18e-10,20;UBERON:0004088,1.18e-10,20;UBERON:0010230,1.18e-10,20;UBERON:0003072,1.18e-10,20;UBERON:0004128,1.18e-10,20;UBERON:0003071,1.18e-10,20;UBERON:0000165,2.50e-10,29;UBERON:0000930,2.50e-10,29;UBERON:0005705,2.84e-10,1;UBERON:0008193,2.84e-10,1;UBERON:0010912,2.84e-10,1;UBERON:0002514,2.84e-10,1;UBERON:0003457,2.84e-10,1;UBERON:0008907,2.84e-10,1;UBERON:0008001,2.84e-10,1;UBERON:0007213,2.84e-10,1;UBERON:0009891,2.84e-10,1;UBERON:0007914,2.84e-10,1;UBERON:0009292,2.84e-10,1;UBERON:0003099,2.84e-10,1;UBERON:0007375,2.84e-10,1;UBERON:0003323,2.84e-10,1;UBERON:0010258,2.84e-10,1;UBERON:0007842,2.84e-10,1;UBERON:0009494,2.84e-10,1;UBERON:0010042,2.84e-10,1;UBERON:0010045,2.84e-10,1;UBERON:0010259,2.84e-10,1;UBERON:0010359,2.84e-10,1;UBERON:0009526,2.84e-10,1;UBERON:0002397,2.84e-10,1;UBERON:0003113,2.84e-10,1;UBERON:0003277,2.84e-10,1;UBERON:0001709,2.84e-10,1;UBERON:0004066,2.84e-10,1;UBERON:0002244,2.84e-10,1;UBERON:0005620,2.84e-10,1;UBERON:0004362,2.84e-10,1;UBERON:0010364,2.84e-10,1;UBERON:0010046,2.84e-10,1;UBERON:0005868,2.84e-10,1;UBERON:0007238,2.84e-10,1;UBERON:0004288,2.84e-10,1;UBERON:0004068,2.84e-10,1;UBERON:0010334,2.84e-10,1;UBERON:0003852,2.84e-10,1;UBERON:0010253,2.84e-10,1;UBERON:0001801,3.74e-10,14;UBERON:0000970,3.87e-10,21;UBERON:0002104,3.87e-10,21;UBERON:0011137,4.12e-10,14;UBERON:0010077,1.07e-09,4;UBERON:0005389,1.07e-09,4;UBERON:0000484,1.07e-09,4;UBERON:0002546,1.07e-09,4;UBERON:0000965,1.07e-09,4;UBERON:0001803,1.07e-09,4;UBERON:0003073,1.07e-09,4;UBERON:0005426,1.07e-09,4;UBERON:0000010,1.18e-09,8;UBERON:0000488,1.34e-09,4;UBERON:0000075,7.22e-09,16;UBERON:0000020,7.49e-09,24;UBERON:0001032,7.49e-09,24;UBERON:0004456,7.49e-09,24;UBERON:0004121,1.08e-08,171;UBERON:0000924,1.08e-08,171;UBERON:0006601,1.08e-08,171;UBERON:0002108,8.91e-08,4;UBERON:0005085,8.19e-07,31 | |||
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| ||
|short_description=p5@LRBA | |short_description=p5@LRBA | ||
}} | }} |
Latest revision as of 01:41, 16 September 2015
Short description: | p5@LRBA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LRBA_5end |
Coexpression cluster: | C1272_medulloblastoma_neuroblastoma_colon_Osteoblast_normal_Ciliary_pons |
Association with transcript: | -37bp_to_ENST00000503716, uc003ils.3_5end |
EntrezGene: | LRBA |
HGNC: | 1742 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of periodontium | 1.89e-13 | 6 |
ciliated cell | 1.68e-12 | 3 |
ciliated epithelial cell | 1.68e-12 | 3 |
multi-ciliated epithelial cell | 1.68e-12 | 3 |
non-pigmented ciliary epithelial cell | 1.68e-12 | 3 |
crystallin accumulating cell | 1.07e-09 | 4 |
vertebrate lens cell | 1.07e-09 | 4 |
lens epithelial cell | 1.07e-09 | 4 |
fibroblast of gingiva | 6.54e-08 | 5 |
osteoblast | 8.63e-08 | 11 |
osteoprogenitor cell | 8.63e-08 | 11 |
mesenchyme condensation cell | 8.63e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 3.17e-14 | 6 |