FFCP PHASE1:Hg19::chr3:152879985..152880038,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5912 | |EntrezGene=5912 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9862 | |HGNC=9862 | ||
|TSSclassifier=strong | |||
|UniProt=P61225,Q5JQ44 | |UniProt=P61225,Q5JQ44 | ||
|association_with_transcript=0bp_to_ENST00000323534,NM_002886,uc003ezr.2_5end | |association_with_transcript=0bp_to_ENST00000323534,NM_002886,uc003ezr.2_5end | ||
|cluster_id=chr3:152879985..152880038,+ | |||
|coexpression_cluster_id=C4296 | |coexpression_cluster_id=C4296 | ||
|description=CAGE_peak_1_at_RAP2B_5end | |description=CAGE_peak_1_at_RAP2B_5end | ||
|id=chr3:152879985..152880038,+ | |id=chr3:152879985..152880038,+ | ||
|ontology_enrichment_celltype=CL:0000003!3.51e-27!722;CL:0002057!1.02e-25!42;CL:0000144!3.33e-25!625;CL:0002009!5.33e-25!65;CL:0000557!7.58e-25!71;CL:0002371!9.41e-25!591;CL:0000839!1.99e-24!70;CL:0000012!4.27e-24!682;CL:0002194!5.37e-24!63;CL:0000576!5.37e-24!63;CL:0000040!5.37e-24!63;CL:0000559!5.37e-24!63;CL:0000063!8.47e-24!578;CL:0000766!4.00e-23!76;CL:0000548!1.02e-22!679;CL:0000004!1.02e-22!679;CL:0000255!1.02e-22!679;CL:0000738!1.91e-22!140;CL:0000860!5.17e-22!45;CL:0002031!2.08e-21!124;CL:0000763!3.29e-21!112;CL:0000049!3.29e-21!112;CL:0000037!4.89e-21!172;CL:0000566!4.89e-21!172;CL:0000988!2.01e-20!182;CL:0002087!4.50e-20!119;CL:0002032!6.92e-20!165;CL:0000837!6.92e-20!165;CL:0000034!4.21e-08!444;CL:0002320!8.72e-08!365;CL:0000115!1.49e-07!35;CL:0000134!1.81e-07!358;CL:0000723!4.47e-07!436;CL:0000048!9.27e-07!430 | |ontology_enrichment_celltype=CL:0000003!3.51e-27!722;CL:0002057!1.02e-25!42;CL:0000144!3.33e-25!625;CL:0002009!5.33e-25!65;CL:0000557!7.58e-25!71;CL:0002371!9.41e-25!591;CL:0000839!1.99e-24!70;CL:0000012!4.27e-24!682;CL:0002194!5.37e-24!63;CL:0000576!5.37e-24!63;CL:0000040!5.37e-24!63;CL:0000559!5.37e-24!63;CL:0000063!8.47e-24!578;CL:0000766!4.00e-23!76;CL:0000548!1.02e-22!679;CL:0000004!1.02e-22!679;CL:0000255!1.02e-22!679;CL:0000738!1.91e-22!140;CL:0000860!5.17e-22!45;CL:0002031!2.08e-21!124;CL:0000763!3.29e-21!112;CL:0000049!3.29e-21!112;CL:0000037!4.89e-21!172;CL:0000566!4.89e-21!172;CL:0000988!2.01e-20!182;CL:0002087!4.50e-20!119;CL:0002032!6.92e-20!165;CL:0000837!6.92e-20!165;CL:0000034!4.21e-08!444;CL:0002320!8.72e-08!365;CL:0000115!1.49e-07!35;CL:0000134!1.81e-07!358;CL:0000723!4.47e-07!436;CL:0000048!9.27e-07!430 | ||
|ontology_enrichment_celltype_v019=CL:0000473;3.60e-19;39!CL:0000234;3.60e-19;39!CL:0000860;5.38e-19;33!CL:0002057;5.38e-19;33!CL:0000576;3.51e-16;48!CL:0000766;3.48e-12;69!CL:0000763;2.21e-07;100!CL:0000115;6.84e-07;36!CL:0002087;8.36e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.29e-29,48;CL:0000234,1.29e-29,48;CL:0002009,2.38e-29,61;CL:0000557,6.49e-29,67;CL:0000839,1.73e-28,66;CL:0002194,2.54e-28,59;CL:0000576,2.54e-28,59;CL:0000040,2.54e-28,59;CL:0000559,2.54e-28,59;CL:0000766,8.14e-27,72;CL:0000860,1.02e-25,42;CL:0002057,1.02e-25,42;CL:0000738,7.16e-25,136;CL:0002031,6.03e-24,120;CL:0000763,6.71e-24,108;CL:0000049,6.71e-24,108;CL:0000037,4.25e-23,168;CL:0002087,1.43e-22,115;CL:0000988,4.08e-22,177;CL:0002032,6.33e-22,161;CL:0000837,6.33e-22,161;CL:0000034,1.87e-08,441;CL:0002320,3.46e-08,361;CL:0000134,7.31e-08,354;CL:0000115,8.67e-08,36;CL:0000723,2.10e-07,433;CL:0000048,4.45e-07,427;CL:0000219,5.71e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.02e-18;42!CL:0000049;2.10e-07;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.08e-24!102;UBERON:0003061!1.08e-24!102;UBERON:0002193!1.79e-24!112;UBERON:0002371!1.25e-23!80;UBERON:0001474!2.42e-21!86;UBERON:0003081!4.82e-21!216;UBERON:0004765!1.91e-17!101;UBERON:0001434!1.91e-17!101;UBERON:0002405!1.05e-15!115;UBERON:0002204!5.18e-10!167 | |ontology_enrichment_uberon=UBERON:0002390!1.08e-24!102;UBERON:0003061!1.08e-24!102;UBERON:0002193!1.79e-24!112;UBERON:0002371!1.25e-23!80;UBERON:0001474!2.42e-21!86;UBERON:0003081!4.82e-21!216;UBERON:0004765!1.91e-17!101;UBERON:0001434!1.91e-17!101;UBERON:0002405!1.05e-15!115;UBERON:0002204!5.18e-10!167 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,7.49e-28,98;UBERON:0003061,7.49e-28,98;UBERON:0002193,1.99e-27,108;UBERON:0002371,3.02e-27,76;UBERON:0002405,1.55e-25,93;UBERON:0001474,1.48e-24,82;UBERON:0004765,2.07e-24,90;UBERON:0003081,2.27e-20,203;UBERON:0001434,9.13e-20,100;UBERON:0002204,2.89e-11,167;UBERON:0000926,8.87e-10,315;UBERON:0004120,8.87e-10,315;UBERON:0006603,8.87e-10,315;UBERON:0002384,9.79e-07,371 | |||
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|phase1_expression=14.5342703416445,14.5588356245869,13.8135316014052,13.009528785907,14.3027550216732,11.3404008133048,22.796989035148,17.6881564559513,33.954131665979,35.6314207927188,60.7087016136012,30.8002334703543,43.2577844294664,32.1792517696121,23.529213676682,21.5144046864568,25.313170177007,29.9427137058823,34.643228714126,39.2756175264953,42.6361444700489,27.5840154900717,16.3154512664702,18.0674241096207,16.0694578681348,23.9938094048567,23.6449697615844,21.0157786107524,152.625339417375,100.56330230147,201.106144187583,31.2603216322835,43.373652304068,48.807529342016,7.12698245338775,10.804861669044,35.2320527201817,102.489150578397,94.4564347584367,94.6167396321114,284.372652284704,236.118482527836,306.514925484682,255.028510819357,340.844101207306,234.821371229806,156.19231280062,238.066207164637,147.729938916964,117.378496067437,159.331959461101,113.984434806298,248.216890130365,174.926349251217,151.677664985663,194.454336747511,265.264777856226,158.430056533785,235.684597125595,268.296666635614,251.259490439023,139.856951279168,204.450249062173,155.145809193901,60.6537308733741,93.6185620740381,56.0540024096018,134.920533242871,171.046397241826,121.84294187957,52.6697567291031,80.2845246452891,64.2418646504995,96.9661764171813,82.2778640864719,90.1532175686016,102.106725712164,100.017810632443,86.309640056332,87.4989123285633,83.5450044236178,89.1401070371414,22.879511779972,32.2221780644658,27.5747868697702,33.7116875827541,30.4300950147369,27.5881171178152,26.4417949113945,31.483773899667,17.6456020423929,24.6639619535794,19.4959346343867,56.8336712889811,57.1718734241167,49.5162079377145,28.5229166665058,45.5892484789031,52.8395852428739,51.3262540849382,28.0293149304888,29.8272117612882,25.3274746930285,56.5965120976682,38.004162064254,39.2114993413009,35.204502289452,53.4140803256065,52.2838577190711,35.8474632036014,38.6890024900188,33.6171579452661,24.46728292174,23.276052043805,31.360657141493,60.0539516297101,50.5851051554536,57.0421559501166,57.9415094724662,60.8459941359025,56.6442604855084,53.225314489109,57.3691203686314,65.2731716887534,59.966748745126,62.7459717916645,63.2268557629206,52.4177532384304,52.4182783735674,41.1301307027149,21.9426179682566,22.8038292299236,32.9885409556308,31.8066454098418,39.1043570295994,30.417768981773,19.8821486762775,26.764917866645,31.3855592984705,36.3636211838605,35.7487577771023,15.8484681352232,85.2450974604549,64.5164930444907,67.5058578801741,57.4628133087582,60.4958720360836,60.3381279492515,72.0713587582961,62.4048602233669,62.4113959131454,43.0117297553062,45.1282652089873,45.2246353539208,54.9544261434977,57.7747888074142,49.3228121026873,35.6615127653674,33.4420286925508,27.447090246703,62.4385441519178,44.0957821316737,67.605189940843,46.6932112039253,64.8113558305408,29.6475097903145,19.0849966732244,31.9816604572635,50.5944903637415,55.0574082549515,63.9374086317121,25.038279312852,42.6558290563158,78.0608353335137,12.424298792383,30.2646922878346,14.0353731662012,17.4970338656776,45.0428845391913,33.6406560085384,22.417289103238,25.6534250353846,30.1874704337773,23.304946268056,21.2500474047496,26.1848349825731,38.0276110156799,30.6961075702274,31.2160076830321,22.2484010402335,32.7292610408444,18.4372162870711,19.5866262685439,23.73618633268,22.4569588380383,23.0928516546124,22.9383234210199,11.8800285728205,20.7704220593988,25.4845181342647,45.9915610762393,22.7253753837989,20.5194372590021,18.5632957374403,25.0217243902078,24.2125358681226,22.3854707770829,30.6266894532057,8.07253360599879,24.1319849364981,16.5306882904458,12.3037349394605,27.2058677189479,8.75977836155139,20.6589710528065,10.801685263441,18.6104679857889,10.6022185182528,23.5647740524286,36.8553009546891,9.58525899794859,20.6541801366663,25.6036494388836,76.7245587058288,60.5496387711653,61.6629880086358,32.566979536602,40.9516984113389,38.3440011469411,42.0863883362404,44.9131114558619,39.0525774211138,20.3384392028761,39.8809381679589,34.5337303381201,18.1103491932472,20.934504968418,17.6277132059367,22.9275178506218,21.9320037193969,18.198505500845,24.6203771824419,18.5071082906655,11.7303238099343,10.9884020470194,14.6203919639628,42.074860913605,53.2918740453094,44.4499932237912,26.4615680493976,2.53510069643662,11.7939266001315,12.4065880403095,8.82926198829301,23.859757077364,36.0292401626904,63.1064141099597,74.1851571500289,71.8782152743161,65.9229729528731,37.7937634159977,64.4759566873339,62.0624770708675,47.2996052298313,33.6962952456808,32.9155500895248,31.4830148552095,28.9186311396589,62.4261474387827,58.3770590224513,238.584278898688,70.6692880720498,166.912795250242,56.2403003920662,51.9064776134476,37.8539509637172,54.4515818033318,56.3829840717086,69.3922649289032,3.4486426652716,31.6093878107481,51.6247007696522,49.5772639754347,52.0118825716685,87.8175878060698,113.06857396525,98.4626556564395,65.007529488628,57.0692584503445,80.4919395021699,83.7471447607594,59.4294747030412,29.645284680663,57.7172309410877,12.2808129969889,92.990675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| ||
|short_description=p1@RAP2B | |short_description=p1@RAP2B | ||
}} | }} |
Latest revision as of 03:12, 16 September 2015
Short description: | p1@RAP2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAP2B_5end |
Coexpression cluster: | C4296_Monocytederived_CD14_Macrophage_ductal_Basophils_cervical_Urothelial |
Association with transcript: | 0bp_to_ENST00000323534, NM_002886, uc003ezr.2_5end |
EntrezGene: | RAP2B |
HGNC: | 9862 |
UniProt: | P61225Q5JQ44 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.29e-29 | 48 |
phagocyte | 1.29e-29 | 48 |
macrophage dendritic cell progenitor | 2.38e-29 | 61 |
granulocyte monocyte progenitor cell | 6.49e-29 | 67 |
myeloid lineage restricted progenitor cell | 1.73e-28 | 66 |
monopoietic cell | 2.54e-28 | 59 |
monocyte | 2.54e-28 | 59 |
monoblast | 2.54e-28 | 59 |
promonocyte | 2.54e-28 | 59 |
myeloid leukocyte | 8.14e-27 | 72 |
classical monocyte | 1.02e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.02e-25 | 42 |
leukocyte | 7.16e-25 | 136 |
hematopoietic lineage restricted progenitor cell | 6.03e-24 | 120 |
myeloid cell | 6.71e-24 | 108 |
common myeloid progenitor | 6.71e-24 | 108 |
hematopoietic stem cell | 4.25e-23 | 168 |
nongranular leukocyte | 1.43e-22 | 115 |
hematopoietic cell | 4.08e-22 | 177 |
hematopoietic oligopotent progenitor cell | 6.33e-22 | 161 |
hematopoietic multipotent progenitor cell | 6.33e-22 | 161 |
stem cell | 1.87e-08 | 441 |
connective tissue cell | 3.46e-08 | 361 |
mesenchymal cell | 7.31e-08 | 354 |
endothelial cell | 8.67e-08 | 36 |
somatic stem cell | 2.10e-07 | 433 |
multi fate stem cell | 4.45e-07 | 427 |
motile cell | 5.71e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 7.49e-28 | 98 |
blood island | 7.49e-28 | 98 |
hemolymphoid system | 1.99e-27 | 108 |
bone marrow | 3.02e-27 | 76 |
immune system | 1.55e-25 | 93 |
bone element | 1.48e-24 | 82 |
skeletal element | 2.07e-24 | 90 |
lateral plate mesoderm | 2.27e-20 | 203 |
skeletal system | 9.13e-20 | 100 |
musculoskeletal system | 2.89e-11 | 167 |
mesoderm | 8.87e-10 | 315 |
mesoderm-derived structure | 8.87e-10 | 315 |
presumptive mesoderm | 8.87e-10 | 315 |
connective tissue | 9.79e-07 | 371 |