FFCP PHASE1:Hg19::chr17:54991255..54991266,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7706 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12932 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=142bp_to_uc010dcj.2_5end | |||
|cluster_id=chr17:54991255..54991266,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_4_at_TRIM25_5end | |||
|id=chr17:54991255..54991266,- | |||
|ontology_enrichment_celltype=CL:0002057!4.11e-23!42;CL:0000860!5.23e-23!45;CL:0000839!1.83e-14!70;CL:0002194!2.03e-14!63;CL:0000576!2.03e-14!63;CL:0000040!2.03e-14!63;CL:0000559!2.03e-14!63;CL:0000766!2.74e-14!76;CL:0000557!4.46e-14!71;CL:0002009!1.34e-13!65;CL:0000763!5.07e-10!112;CL:0000049!5.07e-10!112;CL:0002031!7.38e-10!124;CL:0002087!4.40e-09!119;CL:0000738!3.10e-08!140;CL:0002032!3.44e-08!165;CL:0000837!3.44e-08!165;CL:0000037!3.19e-07!172;CL:0000566!3.19e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.02e-83;33!CL:0002057;8.02e-83;33!CL:0000473;2.92e-57;39!CL:0000234;2.92e-57;39!CL:0000576;7.37e-38;48!CL:0000766;2.78e-24;69!CL:0000763;1.48e-12;100!CL:0002087;8.79e-12;104!CL:0000738;2.06e-08;136!CL:0002127;1.44e-07;1!CL:0000911;1.44e-07;1!CL:0000814;1.44e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.41e-71,42;CL:0002057,1.41e-71,42;CL:0000473,4.20e-62,48;CL:0000234,4.20e-62,48;CL:0002194,7.83e-49,59;CL:0000576,7.83e-49,59;CL:0000040,7.83e-49,59;CL:0000559,7.83e-49,59;CL:0000839,1.88e-47,66;CL:0000766,3.69e-47,72;CL:0002009,4.04e-47,61;CL:0000557,1.09e-46,67;CL:0000763,4.47e-30,108;CL:0000049,4.47e-30,108;CL:0002031,4.42e-29,120;CL:0002087,6.08e-28,115;CL:0000738,2.10e-27,136;CL:0002032,1.99e-22,161;CL:0000837,1.99e-22,161;CL:0000037,2.69e-21,168;CL:0000988,5.67e-20,177;CL:0000134,2.41e-09,354;CL:0002320,4.63e-09,361;CL:0000219,4.60e-08,386;CL:0002127,1.75e-07,1;CL:0000914,1.75e-07,1;CL:0000911,1.75e-07,1;CL:0000814,1.75e-07,1;CL:0002042,1.75e-07,1;CL:0002039,1.75e-07,1;CL:0002040,1.75e-07,1;CL:0002041,1.75e-07,1;CL:0000048,7.68e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;2.74e-51;42!CL:0000049;3.14e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.86e-13!80;UBERON:0002405!6.36e-13!115;UBERON:0001474!3.31e-12!86;UBERON:0002193!3.89e-11!112;UBERON:0004765!7.00e-11!101;UBERON:0001434!7.00e-11!101;UBERON:0002390!8.65e-11!102;UBERON:0003061!8.65e-11!102 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.03e-40,76;UBERON:0001474,1.89e-37,82;UBERON:0002405,1.34e-35,93;UBERON:0004765,9.11e-34,90;UBERON:0002390,1.43e-33,98;UBERON:0003061,1.43e-33,98;UBERON:0002193,4.54e-30,108;UBERON:0001434,5.56e-30,100;UBERON:0002204,3.21e-16,167;UBERON:0003081,6.80e-14,203;UBERON:0002384,1.13e-08,371;UBERON:0000926,3.62e-08,315;UBERON:0004120,3.62e-08,315;UBERON:0006603,3.62e-08,315 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0.0774672005803016,0,0,0.553995408531877,0.401088894940283,0.217010870715852,0,0,0,0.290796477559129,0,0.727752183563449,1.85943229524548,0.411167888021826,1.85823822537062,51.7846306179871,48.6705342405291,21.7563651497498,3.7922024881028,0.645484683583826,1.35426486594342,0.188242339542605,0,0.224723484445085,6.73384563215986,3.20929027076094,2.55734850319616,22.7597397128834,35.1056037414072,32.8193057910174,2.61188314765726,3.40431134814684,3.11411124497787,58.0384416743077,39.1112188815151,30.1892494140112,6.65939452896706,4.05105399586321,5.06339819905415,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0.364295288292542,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0.208994966536811,0.258416759169329,0.35576626268671,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.264818361626438,0,0,0.560677600142307,0,0,0,0.134710672069688,0,0.302714855289863,0,0.234321431833797,0,0,0.298897361103602,0,0,0,0,0,0.309977343527296,0,0.494533858557114,0,0,0,0.125118519871964,0,0,0,0.150238058906597,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0.10366105501537,0,0,1.56449532329816,0,0,0,0,0,0,0,0.110293972732394,0,0.237270619111097,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0.100528972411631,0,0.651616610620649,0,0,0.115930404975077,0,0.288732895522148,0,0.190254152234598,0,0,0,0,0,0,0,0.283550194484773,0.268675568108545,0,0,1.47798971368783,0.088048434013226,0,0,0.25248486685276,0,0,0,0,0,0.300343057843917,0,0,0,0,0,3.57656445851882,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61642896765115,0.179060963239896,1.2329365839288,0,0,0,0,0,0,0,0,0,0,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0.160853921143607,0,0.154209693802656,0,0,0,0,0,0.200506470303285,0.276242966807689,0,0,0.131124414959424,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0.328014645699706,0,0.412164046590889,0.0915694648183434,0,0,0.650060246036521,0,0.193341436584244,0.154048617114644,0,0,0.214840489736547,0,0.0852266274161009,0,0,0,0.127612712494584,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731140468893853,0,0,0.282810863907425,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0.659006605437454,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0.199579371432817,0.191505370132367,0,0,0,0.228234679033192,0.313359791546046,0,0,0.481764225311099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0.222886768554957,0,0,0,0,0,0,0.445234820091624,0.329607748453519,0.211125408127993,0,0.552567831062295,0,0,0.738508832766417,0,0.359473404589307,0,0,0,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.227884111694002,0,0,0,0,0.274792780205587,0,1.02193298195737,0.156980256395025,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,1.22206028986725,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0.901940516486955,0,0,0,0.627865836814451,0,0,0.416024019039416,0.173559738335131,0.0979923974143777,0.0870592065804026,0,0.687944129886466,0,0.0730893170861856,0.0821154570532092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0.0787831823072236,0,0,0.0984274815147488,0.169346664131569,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0.105600336519406,0,0.191915197319445,0,0,0.25426853765475,0,0,0,0,0.164185041498678,0,0,0.146552233678082,1.32506888912221,0.129282956361551,0,0,0,0.213574825135389,0,0.414239055347196,0,0.197611631897944,0.121792598380896,0,0,0.2506898940227,0,0,0,0.886068179966986,0,0,0,0,0.0620964029413835,0.138348634936231,0,0,0,0,0,0,0,0,0.554805861502613,0,0.251567901752575,0,0.686520205190771,0.151230923763239,0.15543720058278,0,0.159296767163702,0.449803112163605,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0.400027764663154,0,0.336749488765919,0,0.57785949122191,0,0.260994291965212,0,0.231522474323834,1.71315693154527,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633936370075881,0.19998739585493,0.106691729694141,0.172214979660816,0,0.368211900503681,0.419638523158333,0,0.127894371303652,0,0,0,0,0,0.247871528518004,0,0,0.23658523500376,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0.115525666150338,0.381382095467167,0,0,0.0752103283492573,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0.887023701626388,0.115233987555779,0,0,0,0.118193840883968,0.111231401892069,0,0,0.560544326627578,0,0.215927591218621,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196300467230486,0,0,0.102662806856247,0,0,0,0,0,0,0,0.150962843566674,0.0771741581079447,0,0.470317296361523,0,0,0,0,0,0,0,0.128915775947154,0,0.178553938605658,0.352894871715692,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0.193766729508018,0.0620747142958579,0.112131862580613,0,0,0,0,0,0,0,0.651226148887796,0.320182037633146,0,0.179650404213174,0,0,0,0,0,0 | |||
|short_description=p4@TRIM25 | |||
}} |
Latest revision as of 08:16, 16 September 2015
Short description: | p4@TRIM25 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TRIM25_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 142bp_to_uc010dcj.2_5end |
EntrezGene: | TRIM25 |
HGNC: | 12932 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.03e-40 | 76 |
bone element | 1.89e-37 | 82 |
immune system | 1.34e-35 | 93 |
skeletal element | 9.11e-34 | 90 |
hematopoietic system | 1.43e-33 | 98 |
blood island | 1.43e-33 | 98 |
hemolymphoid system | 4.54e-30 | 108 |
skeletal system | 5.56e-30 | 100 |
musculoskeletal system | 3.21e-16 | 167 |
lateral plate mesoderm | 6.80e-14 | 203 |
connective tissue | 1.13e-08 | 371 |
mesoderm | 3.62e-08 | 315 |
mesoderm-derived structure | 3.62e-08 | 315 |
presumptive mesoderm | 3.62e-08 | 315 |