FFCP PHASE1:Hg19::chr1:12290063..12290118,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55187 | |EntrezGene=55187 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23595 | |HGNC=23595 | ||
|TSSclassifier=strong | |||
|UniProt=Q5THJ4 | |UniProt=Q5THJ4 | ||
|association_with_transcript=0bp_to_NM_015378,NM_018156,uc001atv.2,uc001atw.2_5end | |association_with_transcript=0bp_to_NM_015378,NM_018156,uc001atv.2,uc001atw.2_5end | ||
|cluster_id=chr1:12290063..12290118,+ | |||
|coexpression_cluster_id=C1680 | |coexpression_cluster_id=C1680 | ||
|description=CAGE_peak_1_at_VPS13D_5end | |description=CAGE_peak_1_at_VPS13D_5end | ||
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|ontology_enrichment_celltype=CL:0000738!1.93e-11!140;CL:0000037!3.75e-10!172;CL:0000566!3.75e-10!172;CL:0002032!7.69e-09!165;CL:0000837!7.69e-09!165;CL:0002031!2.64e-08!124;CL:0000988!2.60e-07!182;CL:0002087!2.77e-07!119;CL:0000791!3.39e-07!18;CL:0000789!3.39e-07!18;CL:0002420!3.39e-07!18;CL:0002419!3.39e-07!18;CL:0000790!3.39e-07!18 | |ontology_enrichment_celltype=CL:0000738!1.93e-11!140;CL:0000037!3.75e-10!172;CL:0000566!3.75e-10!172;CL:0002032!7.69e-09!165;CL:0000837!7.69e-09!165;CL:0002031!2.64e-08!124;CL:0000988!2.60e-07!182;CL:0002087!2.77e-07!119;CL:0000791!3.39e-07!18;CL:0000789!3.39e-07!18;CL:0002420!3.39e-07!18;CL:0002419!3.39e-07!18;CL:0000790!3.39e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.49e-07;18!CL:0000789;3.49e-07;18!CL:0002419;3.49e-07;18 | |ontology_enrichment_celltype_v019=CL:0000791;3.49e-07;18!CL:0000789;3.49e-07;18!CL:0002419;3.49e-07;18 | ||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.97e-11,136;CL:0000037,4.25e-10,168;CL:0002032,8.76e-09,161;CL:0000837,8.76e-09,161;CL:0002031,2.80e-08,120;CL:0000988,1.69e-07,177;CL:0002087,2.99e-07,115;CL:0000791,3.39e-07,18;CL:0000789,3.39e-07,18;CL:0002420,3.39e-07,18;CL:0002419,3.39e-07,18;CL:0000790,3.39e-07,18 | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.65e-08;82!CL:0000790;3.49e-07;18 | |ontology_enrichment_development_v019=UBERON:0006601;6.65e-08;82!CL:0000790;3.49e-07;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.16e-45!115;UBERON:0001049!4.97e-25!57;UBERON:0005068!4.97e-25!57;UBERON:0006241!4.97e-25!57;UBERON:0007135!4.97e-25!57;UBERON:0003080!3.87e-21!42;UBERON:0002616!7.67e-21!59;UBERON:0002780!8.05e-21!41;UBERON:0001890!8.05e-21!41;UBERON:0006240!8.05e-21!41;UBERON:0000955!3.01e-19!69;UBERON:0006238!3.01e-19!69;UBERON:0001017!9.20e-19!82;UBERON:0002020!2.29e-17!34;UBERON:0003528!2.29e-17!34;UBERON:0001893!2.41e-17!34;UBERON:0002791!6.57e-17!33;UBERON:0005743!7.09e-17!86;UBERON:0001869!3.85e-16!32;UBERON:0000073!1.64e-15!94;UBERON:0001016!1.64e-15!94;UBERON:0002346!1.75e-14!90;UBERON:0003075!4.61e-14!86;UBERON:0007284!4.61e-14!86;UBERON:0002619!1.05e-13!22;UBERON:0000956!1.66e-12!25;UBERON:0000203!1.66e-12!25;UBERON:0001950!1.72e-12!20;UBERON:0000153!8.76e-11!129;UBERON:0007811!8.76e-11!129;UBERON:0000033!1.05e-09!123;UBERON:0003056!1.56e-09!61;UBERON:0000924!2.94e-08!173;UBERON:0006601!2.94e-08!173;UBERON:0004121!7.22e-08!169 | |ontology_enrichment_uberon=UBERON:0007023!7.16e-45!115;UBERON:0001049!4.97e-25!57;UBERON:0005068!4.97e-25!57;UBERON:0006241!4.97e-25!57;UBERON:0007135!4.97e-25!57;UBERON:0003080!3.87e-21!42;UBERON:0002616!7.67e-21!59;UBERON:0002780!8.05e-21!41;UBERON:0001890!8.05e-21!41;UBERON:0006240!8.05e-21!41;UBERON:0000955!3.01e-19!69;UBERON:0006238!3.01e-19!69;UBERON:0001017!9.20e-19!82;UBERON:0002020!2.29e-17!34;UBERON:0003528!2.29e-17!34;UBERON:0001893!2.41e-17!34;UBERON:0002791!6.57e-17!33;UBERON:0005743!7.09e-17!86;UBERON:0001869!3.85e-16!32;UBERON:0000073!1.64e-15!94;UBERON:0001016!1.64e-15!94;UBERON:0002346!1.75e-14!90;UBERON:0003075!4.61e-14!86;UBERON:0007284!4.61e-14!86;UBERON:0002619!1.05e-13!22;UBERON:0000956!1.66e-12!25;UBERON:0000203!1.66e-12!25;UBERON:0001950!1.72e-12!20;UBERON:0000153!8.76e-11!129;UBERON:0007811!8.76e-11!129;UBERON:0000033!1.05e-09!123;UBERON:0003056!1.56e-09!61;UBERON:0000924!2.94e-08!173;UBERON:0006601!2.94e-08!173;UBERON:0004121!7.22e-08!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.48e-15;41!UBERON:0001890;2.48e-15;41!UBERON:0003528;6.47e-15;34!UBERON:0002020;6.47e-15;34!UBERON:0001893;8.35e-15;34!UBERON:0002791;8.81e-15;32!UBERON:0001869;1.08e-14;32!UBERON:0002619;1.10e-13;22!UBERON:0000073;1.28e-13;53!UBERON:0002616;1.28e-13;53!UBERON:0000956;1.46e-12;25!UBERON:0000203;1.46e-12;25!UBERON:0001950;1.82e-12;20!UBERON:0007023;3.76e-12;114!UBERON:0000955;3.00e-09;68!UBERON:0001017;6.73e-09;75!UBERON:0001016;1.39e-08;83 | |ontology_enrichment_uberon_v019=UBERON:0002780;2.48e-15;41!UBERON:0001890;2.48e-15;41!UBERON:0003528;6.47e-15;34!UBERON:0002020;6.47e-15;34!UBERON:0001893;8.35e-15;34!UBERON:0002791;8.81e-15;32!UBERON:0001869;1.08e-14;32!UBERON:0002619;1.10e-13;22!UBERON:0000073;1.28e-13;53!UBERON:0002616;1.28e-13;53!UBERON:0000956;1.46e-12;25!UBERON:0000203;1.46e-12;25!UBERON:0001950;1.82e-12;20!UBERON:0007023;3.76e-12;114!UBERON:0000955;3.00e-09;68!UBERON:0001017;6.73e-09;75!UBERON:0001016;1.39e-08;83 | ||
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|short_description=p1@VPS13D | |short_description=p1@VPS13D | ||
}} | }} |
Latest revision as of 13:55, 16 September 2015
Short description: | p1@VPS13D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VPS13D_5end |
Coexpression cluster: | C1680_Neutrophils_Eosinophils_pineal_optic_cerebellum_pituitary_parietal |
Association with transcript: | 0bp_to_NM_015378, NM_018156, uc001atv.2, uc001atw.2_5end |
EntrezGene: | VPS13D |
HGNC: | 23595 |
UniProt: | Q5THJ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.97e-11 | 136 |
hematopoietic stem cell | 4.25e-10 | 168 |
hematopoietic oligopotent progenitor cell | 8.76e-09 | 161 |
hematopoietic multipotent progenitor cell | 8.76e-09 | 161 |
hematopoietic lineage restricted progenitor cell | 2.80e-08 | 120 |
hematopoietic cell | 1.69e-07 | 177 |
nongranular leukocyte | 2.99e-07 | 115 |
mature alpha-beta T cell | 3.39e-07 | 18 |
alpha-beta T cell | 3.39e-07 | 18 |
immature T cell | 3.39e-07 | 18 |
mature T cell | 3.39e-07 | 18 |
immature alpha-beta T cell | 3.39e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.32e-44 | 114 |
neural tube | 1.08e-24 | 56 |
neural rod | 1.08e-24 | 56 |
future spinal cord | 1.08e-24 | 56 |
neural keel | 1.08e-24 | 56 |
regional part of nervous system | 7.86e-23 | 53 |
regional part of brain | 7.86e-23 | 53 |
regional part of forebrain | 8.05e-21 | 41 |
forebrain | 8.05e-21 | 41 |
anterior neural tube | 8.05e-21 | 41 |
future forebrain | 8.05e-21 | 41 |
brain | 6.51e-19 | 68 |
future brain | 6.51e-19 | 68 |
central nervous system | 1.97e-18 | 81 |
brain grey matter | 2.29e-17 | 34 |
gray matter | 2.29e-17 | 34 |
telencephalon | 2.41e-17 | 34 |
nervous system | 7.57e-17 | 89 |
regional part of telencephalon | 2.77e-16 | 32 |
cerebral hemisphere | 3.85e-16 | 32 |
regional part of cerebral cortex | 1.05e-13 | 22 |
neurectoderm | 1.47e-13 | 86 |
neural plate | 3.84e-13 | 82 |
presumptive neural plate | 3.84e-13 | 82 |
cerebral cortex | 1.66e-12 | 25 |
pallium | 1.66e-12 | 25 |
neocortex | 1.72e-12 | 20 |
pre-chordal neural plate | 9.93e-10 | 61 |
ecto-epithelium | 4.66e-09 | 104 |
structure with developmental contribution from neural crest | 7.82e-08 | 132 |
ectoderm-derived structure | 1.58e-07 | 171 |
ectoderm | 1.58e-07 | 171 |
presumptive ectoderm | 1.58e-07 | 171 |