FFCP PHASE1:Hg19::chr1:12524965..12525019,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55187 | |EntrezGene=55187 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23595 | |HGNC=23595 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000471923_5end | |association_with_transcript=0bp_to_ENST00000471923_5end | ||
|cluster_id=chr1:12524965..12525019,+ | |||
|description=CAGE_peak_4_at_VPS13D_5end | |description=CAGE_peak_4_at_VPS13D_5end | ||
|id=chr1:12524965..12525019,+ | |id=chr1:12524965..12525019,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.22e-12!180;CL:0000187!1.35e-11!54;CL:0000183!2.75e-11!59;CL:0000680!3.29e-11!57;CL:0000056!3.29e-11!57;CL:0000355!3.29e-11!57;CL:0000393!2.57e-09!60;CL:0000211!2.57e-09!60;CL:0000192!1.76e-07!42;CL:0000514!1.76e-07!42;CL:0000222!7.14e-07!119 | |ontology_enrichment_celltype=CL:0000055!1.22e-12!180;CL:0000187!1.35e-11!54;CL:0000183!2.75e-11!59;CL:0000680!3.29e-11!57;CL:0000056!3.29e-11!57;CL:0000355!3.29e-11!57;CL:0000393!2.57e-09!60;CL:0000211!2.57e-09!60;CL:0000192!1.76e-07!42;CL:0000514!1.76e-07!42;CL:0000222!7.14e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000077;8.16e-08;19!CL:0002603;3.54e-07;3!CL:0000064;5.06e-07;3!CL:0000067;5.06e-07;3!CL:0005012;5.06e-07;3!CL:0002304;5.06e-07;3!CL:0002622;6.91e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,6.37e-08,19;CL:0002603,3.46e-07,3;CL:0000064,4.69e-07,3;CL:0000067,4.69e-07,3;CL:0005012,4.69e-07,3;CL:0002304,4.69e-07,3;CL:0002622,8.24e-07,3;CL:0000187,9.04e-07,55;CL:0000222,9.14e-07,121 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001134!2.15e-10!61;UBERON:0002036!2.15e-10!61;UBERON:0003082!2.15e-10!61;UBERON:0002385!2.50e-10!63;UBERON:0001015!2.50e-10!63;UBERON:0000383!2.50e-10!63;UBERON:0000475!4.46e-09!365;UBERON:0000486!1.56e-08!82;UBERON:0004290!1.23e-07!70;UBERON:0000914!2.64e-07!83;UBERON:0002329!2.64e-07!83;UBERON:0003077!2.64e-07!83;UBERON:0003059!2.64e-07!83;UBERON:0007282!2.64e-07!83;UBERON:0009618!2.64e-07!83;UBERON:0007285!2.64e-07!83 | |ontology_enrichment_uberon=UBERON:0001134!2.15e-10!61;UBERON:0002036!2.15e-10!61;UBERON:0003082!2.15e-10!61;UBERON:0002385!2.50e-10!63;UBERON:0001015!2.50e-10!63;UBERON:0000383!2.50e-10!63;UBERON:0000475!4.46e-09!365;UBERON:0000486!1.56e-08!82;UBERON:0004290!1.23e-07!70;UBERON:0000914!2.64e-07!83;UBERON:0002329!2.64e-07!83;UBERON:0003077!2.64e-07!83;UBERON:0003059!2.64e-07!83;UBERON:0007282!2.64e-07!83;UBERON:0009618!2.64e-07!83;UBERON:0007285!2.64e-07!83 | ||
|ontology_enrichment_uberon_v019=UBERON:0000488;6.98e-09;4!UBERON:0007625;1.59e-08;11!UBERON:0002367;3.39e-08;11!UBERON:0010147;3.39e-08;11!UBERON:0003937;2.07e-07;12!UBERON:0005399;2.07e-07;12!UBERON:0001778;5.06e-07;3!UBERON:0001775;5.06e-07;3!UBERON:0004457;5.60e-07;9!UBERON:0000042;5.60e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000488,6.24e-09,4;UBERON:0007625,1.38e-08,11;UBERON:0002367,2.84e-08,11;UBERON:0010147,2.84e-08,11;UBERON:0009846,2.84e-08,11;UBERON:0003353,2.84e-08,11;UBERON:0004902,2.84e-08,11;UBERON:0003820,2.84e-08,11;UBERON:0009847,2.84e-08,11;UBERON:0004122,1.39e-07,15;UBERON:0003937,1.76e-07,12;UBERON:0005399,1.76e-07,12;UBERON:0001778,4.69e-07,3;UBERON:0001775,4.69e-07,3 | |||
|phase1_expression=0.181678379270557,0.428201047781966,2.53717927372748,1.0007329835313,0.446961094427288,1.74467704820074,0,0,0,0.737201809504527,0.697801167972428,0,0,1.11389717664042,0.662794751455832,0,0,0,0.487932798790507,6.89477925230012,3.67201244239655,3.13454721478088,1.43117993565528,0.273748850145768,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.950452044448374,0,0,0,0,0,0,0,0,0,2.68280343881454,5.37022759742827,0.361439152384566,1.00267582127178,0.579386075843295,0,0.973269740605272,3.30871860074237,3.99112915432615,3.51339142772504,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,3.44263870114369,1.14734648299525,0.709336764396714,0,1.06748995729705,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0.206651562351531,1.18800285728205,0.247266929278557,0,0,0,0,0,0.438977620880838,0.612975591598039,0.150238058906597,0.226864366320042,0,0.427114777637135,1.27159140695737,0.300091096084402,0.721367704669072,0.515281080091258,0.558350568994769,0.168776332241266,0.779496041289589,0.757301322732344,1.28869858099219,4.68773564774555,0,0,0.508681776931463,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,5.10804720835177,10.8281922250438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.97546649865724,0,0,0,0,0,0,1.44331342025273,0,14.0890433082986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74384027533312,0,0.775630294546667,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0.823240336780769,0,0,0,28.6367408206607,43.5766729300147,12.196704924211,0,0,0,0,0,0,0,0.61642896765115,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20844685094452,4.00136416847742,0,5.19927153827018,0.713715955188647,0.788512075169673,2.34282829985426,0.300946099727719,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0.280660094433074,1.92208723883551,1.02341449813341,0,0,0.154209693802656,0.177561725313127,0.410635780069046,0,0,0,0.601519410909855,0,9.41478474949775,1.27463817604702,4.327105693661,0.451199612907412,0,0,0,0,0,0,0,0,1.08378575017541,0.501689773854853,0,0,0,0,0,0.256450125116389,4.92021968549559,0,1.64865618636356,0.366277859273374,0.082509499920588,0,0,6.42735719376638,0.386682873168488,0.308097234229289,0.921022048356777,0.137836572484531,7.62683738564743,3.33538396002726,0.426133137080504,2.40386496246191,0,0,0,0,2.78907329578371,1.5740617341532,0,0,0.532306030317022,0.869932992075073,0.55597265731176,1.28812398067792,0,1.2655176988749,0,0,0,2.86382923133343,0,0.719489830333259,1.09814811894422,0.235624804691373,0.606547444719948,0,0.842516912477962,0,2.92456187557541,1.05650146756755,1.9109987597118,6.78746073377821,1.13008116620243,2.75682671773062,1.32687795048244,0.438450885253763,0,0.655894752046633,0,0.6196469961995,0,0.143411352204052,0,0,0.354761064070598,2.53329162357197,2.63435914367922,0,0,0,0,0,1.50630081242847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31857361344705,0,0,0,1.90995587790152,0,0,0,0,9.34993122192409,0,0,0.796991953004279,0,0,0,0,0,0,0,0,0.591860433821602,0,0,0,0,0,0,0,0,0.341380344856499,1.01701460117107,0,0,0,0,0,0,0,0,0,0,0,0,6.07907042179997,0,0,0.448788222048861,1.52106320690811,9.8890359516895,0,5.86338253620498,0,0,0,0,0.19606253431774,0,0,0,0,0.163232808159148,0,0.216388639742091,0,0.0884575645033392,0,0,0,0,0.134802265961354,0,0,0,0,0,0.394584402849391,0,0,0.189559738885464,0,0,0,0.330991955875499,0,0,0,0,1.56203764501618,0.195984794828755,9.66357193042468,0.698906672968121,0,0,0,0,0.678923115418936,0,2.03382666702479,0.137041924646751,0,0,0,0.320635281006135,0,0,0,0,0.171594997861965,0,0,0,0,0,0.203996435272644,0.288950589901519,0,0,0,1.28929632425987,0,0.279282401272254,0.687481272035051,0,0,0,0,0.201550417460179,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.104909176269996,0.105600336519406,0,0,0.714695326373367,0,0,1.62899880526114,0,0.326587360109409,0,0,0,0.113312091520126,0,0,0,0,0,1.40963004463334,1.28144895081234,7.54580664478397,0,0,0,0,0,0,1.0027595760908,0.612691153526923,0.327872630709804,0,0,0,0,0,0,0.18628920882415,0,0,0,0,0,0,0,0.447764408660622,0,2.21922344601045,0,0,1.77962244319307,0,0.151230923763239,0,0,0.159296767163702,0,0.310525913752519,0,0,0,2.25386413495828,6.09288339470073,1.22061219961398,0,0.751873899297419,0.464033759878494,0,0,2.74716564146234,1.34699795506368,0,0,0.214441591374926,0,0.453411851024545,2.77826969188601,0,44.2349437471274,0,16.6655877679817,0,5.98033518639836,1.8583668471838,0,0,0,0,0,0,0,0,2.21195617878347,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0.196295437002051,0,0.183428598521679,0,0,0,0,0.601682626794058,1.41193548092464,0,0.523813388962845,0,0,0,0,0,0,0.546974809018219,0,0.496211178389294,0,0.383287282918786,0.535701835878287,0,0.606965604236632,1.59363533945908,0.266107110487916,0,0,0,0,0,1.33477682270483,9.4976642349122,0,0,0,0.215927591218621,0,0.500335809236594,0,0,0,2.40513409419076,0,0,0,0.430227358820278,0.118332000730565,0,0,3.43660302816075,0,0,0,0,0,0,0.307988420568741,0,0.485710993059139,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0.0802413666891683,0,0.917458566809082,0,0.788857810965923,0,0,0,1.48798007266701,1.84870251452567,0.432626562123789,0,0,0,0,0,0,0,0.227336094654718,0,0,0,2.13233981900981,0.476128862927481,0,0.248298857183432,0.112131862580613,0.763765899337979,0,0.653150243690884,1.02669990325584,0.606168477131288,3.29922144806311,1.66330178273007,0.325613074443898,16.2225565734127,0,0,0,1.4668973301944,6.10344267473608,0,0.805095174364105,0 | |phase1_expression=0.181678379270557,0.428201047781966,2.53717927372748,1.0007329835313,0.446961094427288,1.74467704820074,0,0,0,0.737201809504527,0.697801167972428,0,0,1.11389717664042,0.662794751455832,0,0,0,0.487932798790507,6.89477925230012,3.67201244239655,3.13454721478088,1.43117993565528,0.273748850145768,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.950452044448374,0,0,0,0,0,0,0,0,0,2.68280343881454,5.37022759742827,0.361439152384566,1.00267582127178,0.579386075843295,0,0.973269740605272,3.30871860074237,3.99112915432615,3.51339142772504,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,3.44263870114369,1.14734648299525,0.709336764396714,0,1.06748995729705,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0.206651562351531,1.18800285728205,0.247266929278557,0,0,0,0,0,0.438977620880838,0.612975591598039,0.150238058906597,0.226864366320042,0,0.427114777637135,1.27159140695737,0.300091096084402,0.721367704669072,0.515281080091258,0.558350568994769,0.168776332241266,0.779496041289589,0.757301322732344,1.28869858099219,4.68773564774555,0,0,0.508681776931463,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,5.10804720835177,10.8281922250438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.97546649865724,0,0,0,0,0,0,1.44331342025273,0,14.0890433082986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74384027533312,0,0.775630294546667,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0.823240336780769,0,0,0,28.6367408206607,43.5766729300147,12.196704924211,0,0,0,0,0,0,0,0.61642896765115,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20844685094452,4.00136416847742,0,5.19927153827018,0.713715955188647,0.788512075169673,2.34282829985426,0.300946099727719,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0.280660094433074,1.92208723883551,1.02341449813341,0,0,0.154209693802656,0.177561725313127,0.410635780069046,0,0,0,0.601519410909855,0,9.41478474949775,1.27463817604702,4.327105693661,0.451199612907412,0,0,0,0,0,0,0,0,1.08378575017541,0.501689773854853,0,0,0,0,0,0.256450125116389,4.92021968549559,0,1.64865618636356,0.366277859273374,0.082509499920588,0,0,6.42735719376638,0.386682873168488,0.308097234229289,0.921022048356777,0.137836572484531,7.62683738564743,3.33538396002726,0.426133137080504,2.40386496246191,0,0,0,0,2.78907329578371,1.5740617341532,0,0,0.532306030317022,0.869932992075073,0.55597265731176,1.28812398067792,0,1.2655176988749,0,0,0,2.86382923133343,0,0.719489830333259,1.09814811894422,0.235624804691373,0.606547444719948,0,0.842516912477962,0,2.92456187557541,1.05650146756755,1.9109987597118,6.78746073377821,1.13008116620243,2.75682671773062,1.32687795048244,0.438450885253763,0,0.655894752046633,0,0.6196469961995,0,0.143411352204052,0,0,0.354761064070598,2.53329162357197,2.63435914367922,0,0,0,0,0,1.50630081242847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31857361344705,0,0,0,1.90995587790152,0,0,0,0,9.34993122192409,0,0,0.796991953004279,0,0,0,0,0,0,0,0,0.591860433821602,0,0,0,0,0,0,0,0,0.341380344856499,1.01701460117107,0,0,0,0,0,0,0,0,0,0,0,0,6.07907042179997,0,0,0.448788222048861,1.52106320690811,9.8890359516895,0,5.86338253620498,0,0,0,0,0.19606253431774,0,0,0,0,0.163232808159148,0,0.216388639742091,0,0.0884575645033392,0,0,0,0,0.134802265961354,0,0,0,0,0,0.394584402849391,0,0,0.189559738885464,0,0,0,0.330991955875499,0,0,0,0,1.56203764501618,0.195984794828755,9.66357193042468,0.698906672968121,0,0,0,0,0.678923115418936,0,2.03382666702479,0.137041924646751,0,0,0,0.320635281006135,0,0,0,0,0.171594997861965,0,0,0,0,0,0.203996435272644,0.288950589901519,0,0,0,1.28929632425987,0,0.279282401272254,0.687481272035051,0,0,0,0,0.201550417460179,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.104909176269996,0.105600336519406,0,0,0.714695326373367,0,0,1.62899880526114,0,0.326587360109409,0,0,0,0.113312091520126,0,0,0,0,0,1.40963004463334,1.28144895081234,7.54580664478397,0,0,0,0,0,0,1.0027595760908,0.612691153526923,0.327872630709804,0,0,0,0,0,0,0.18628920882415,0,0,0,0,0,0,0,0.447764408660622,0,2.21922344601045,0,0,1.77962244319307,0,0.151230923763239,0,0,0.159296767163702,0,0.310525913752519,0,0,0,2.25386413495828,6.09288339470073,1.22061219961398,0,0.751873899297419,0.464033759878494,0,0,2.74716564146234,1.34699795506368,0,0,0.214441591374926,0,0.453411851024545,2.77826969188601,0,44.2349437471274,0,16.6655877679817,0,5.98033518639836,1.8583668471838,0,0,0,0,0,0,0,0,2.21195617878347,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0.196295437002051,0,0.183428598521679,0,0,0,0,0.601682626794058,1.41193548092464,0,0.523813388962845,0,0,0,0,0,0,0.546974809018219,0,0.496211178389294,0,0.383287282918786,0.535701835878287,0,0.606965604236632,1.59363533945908,0.266107110487916,0,0,0,0,0,1.33477682270483,9.4976642349122,0,0,0,0.215927591218621,0,0.500335809236594,0,0,0,2.40513409419076,0,0,0,0.430227358820278,0.118332000730565,0,0,3.43660302816075,0,0,0,0,0,0,0.307988420568741,0,0.485710993059139,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0.0802413666891683,0,0.917458566809082,0,0.788857810965923,0,0,0,1.48798007266701,1.84870251452567,0.432626562123789,0,0,0,0,0,0,0,0.227336094654718,0,0,0,2.13233981900981,0.476128862927481,0,0.248298857183432,0.112131862580613,0.763765899337979,0,0.653150243690884,1.02669990325584,0.606168477131288,3.29922144806311,1.66330178273007,0.325613074443898,16.2225565734127,0,0,0,1.4668973301944,6.10344267473608,0,0.805095174364105,0 | ||
|short_description=p4@VPS13D | |short_description=p4@VPS13D | ||
}} | }} |
Latest revision as of 14:10, 16 September 2015
Short description: | p4@VPS13D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_VPS13D_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000471923_5end |
EntrezGene: | VPS13D |
HGNC: | 23595 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 6.37e-08 | 19 |
astrocyte of the cerebellum | 3.46e-07 | 3 |
ciliated cell | 4.69e-07 | 3 |
ciliated epithelial cell | 4.69e-07 | 3 |
multi-ciliated epithelial cell | 4.69e-07 | 3 |
non-pigmented ciliary epithelial cell | 4.69e-07 | 3 |
prostate stromal cell | 8.24e-07 | 3 |
muscle cell | 9.04e-07 | 55 |
mesodermal cell | 9.14e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
atypical epithelium | 6.24e-09 | 4 |
pigment epithelium of eye | 1.38e-08 | 11 |
prostate gland | 2.84e-08 | 11 |
male accessory sex gland | 2.84e-08 | 11 |
embryonic cloacal epithelium | 2.84e-08 | 11 |
epithelium of hindgut | 2.84e-08 | 11 |
urogenital sinus epithelium | 2.84e-08 | 11 |
prostate bud | 2.84e-08 | 11 |
prostate field | 2.84e-08 | 11 |
genitourinary system | 1.39e-07 | 15 |
sex gland | 1.76e-07 | 12 |
male reproductive gland | 1.76e-07 | 12 |
ciliary epithelium | 4.69e-07 | 3 |
ciliary body | 4.69e-07 | 3 |