FFCP PHASE1:Hg19::chr9:139846708..139846773,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=286256 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28733 | |||
|TSSclassifier=strong | |||
|UniProt=Q6JVE5,Q8IW14 | |||
|association_with_transcript=0bp_to_ENST00000470501,NM_178536,uc004ckb.2,uc004ckc.2_5end | |||
|cluster_id=chr9:139846708..139846773,+ | |||
|coexpression_cluster_id=C39 | |||
|description=CAGE_peak_1_at_LCN12_5end | |||
|id=chr9:139846708..139846773,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002149;5.18e-08;6!CL:0002255;5.18e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002149,4.94e-08,6;CL:0002255,4.94e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0007297;9.74e-12;2!UBERON:0005795;4.96e-08;10!UBERON:0009117;5.29e-08;10!UBERON:0005564;5.29e-08;10!UBERON:0003056;2.16e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3001;5.18e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,4.94e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.60e-31!115;UBERON:0001049!8.28e-14!57;UBERON:0005068!8.28e-14!57;UBERON:0006241!8.28e-14!57;UBERON:0007135!8.28e-14!57;UBERON:0002616!1.01e-10!59;UBERON:0002298!1.04e-10!8;UBERON:0003080!5.73e-10!42;UBERON:0003075!1.63e-09!86;UBERON:0007284!1.63e-09!86;UBERON:0005743!2.98e-09!86;UBERON:0001017!4.89e-09!82;UBERON:0002780!5.09e-09!41;UBERON:0001890!5.09e-09!41;UBERON:0006240!5.09e-09!41;UBERON:0000955!5.24e-09!69;UBERON:0006238!5.24e-09!69;UBERON:0002346!8.74e-09!90;UBERON:0000073!1.42e-08!94;UBERON:0001016!1.42e-08!94;UBERON:0000062!3.33e-08!511;UBERON:0006947!8.79e-08!3;UBERON:0004054!8.79e-08!3;UBERON:0000153!1.00e-07!129;UBERON:0007811!1.00e-07!129;UBERON:0001871!2.21e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0006947;1.01e-16;3!UBERON:0004054;1.01e-16;3!UBERON:0004175;3.09e-14;21!UBERON:0005904;1.16e-12;4!UBERON:0003135;1.06e-11;11!UBERON:0000341;1.86e-11;2!UBERON:0000007;1.81e-10;2!UBERON:0002370;2.93e-10;2!UBERON:0005058;2.93e-10;2!UBERON:0009113;2.93e-10;2!UBERON:0003133;5.21e-10;44!UBERON:0000995;4.97e-07;17!UBERON:0001301;9.91e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,1.01e-16,3;UBERON:0004054,1.01e-16,3;UBERON:0005904,1.16e-12,4;UBERON:0003133,1.70e-12,48;UBERON:0004175,9.80e-12,25;UBERON:0003135,1.07e-11,11;UBERON:0000341,1.81e-11,2;UBERON:0000007,1.35e-10,2;UBERON:0007023,5.21e-10,114;UBERON:0005156,1.03e-09,59;UBERON:0000990,1.03e-09,59;UBERON:0000974,4.96e-08,10;UBERON:0005795,1.56e-07,22;UBERON:0009722,2.22e-07,11;UBERON:0007690,2.22e-07,11;UBERON:0001301,9.91e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,2.09340350391728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20898734969396,0,0,0,0,0,0.476981248610684,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308061348417659,0,0,0.105551628892876,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0,2.76444631889309,0,0.140669416410513,0,0,0.844501632511974,0,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0.724999575434793,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,2.6163087891291,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,1.22206028986725,0,0,0,0.337005664903385,0,0,0,0,0,87.5977374325647,4.83962864194656,0,0.063186579628488,0,0.103688191397247,0,0,0,0,11.9536009332513,0,2.2562765983567,0,0,520.161291356524,0,0,0,0,0,0,0.451961481561065,0,0,0.0633107959558787,0,0,0.213452994739353,0.19980960958213,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0.136905378891993,0,0,0,0.558564802544508,0,0,0.199679000498991,0,0.223171457441873,0.134366944973453,0,1.16495949527454,0,0,0.0674035438541849,0,0,0,0.136203406111576,0,0,0,0,1.5476039091159,0,0,10.0871305342974,8.13046116092471,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0,0,2.81926008926669,0,7.07419372948497,0,0,0,0.487170393523584,0,0,0,0,0,0.314108192500469,0,0.244052529803926,0.1251909307065,2.29363678276028,0.776503360757966,0.496771223531068,0.138348634936231,0,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0.138258436151731,0,0,0.490696182767533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.322951291263702,1.42769420259154,0,0,0,0,0,0,0,2.632361492224,0,0,0,0,0,0,0,0.206686796501184,0.126831620387814,0,0.548257766857182,0,0,0,0,0,1.82089681270989,2.73194629621557,0.0887023701626388,0,0,0.0679697329768317,0.131545547125698,0,0,0.470958557103084,0,0,0,0,0,4.78892845983597,0,0,0,0,0,0,0,1.29068207646083,0,0,40.6451568183292,2.97838929107265,0,0,1.11855431797792,0.687051635306701,0,0,0,0,0,0,4.57586782871147,0,0,0,1.20770274853339,0,0.218559560503957,13.6392015944842,0,0,0.392616934229891,0,0.4226557275834,0,0,0.0644578879735772,0,0,0,0,5.84269110597214,0,0.143339583151451,0,0.0679914901909147,0,3.7031878836078,0,0,0,0,0,0,0,0,0.275684698604535,0,6.51696804676859,3.21556956187414,0.829169439458779,0.20686599172379,7.24995538463335,22.3780565575916,1.0334225573761,1.30356900021302,0,27.0500422682201,106.313641392023,0,0,0.134704106029175,0.143444410785353,0.99798106963804,0,0,0,0,0,2.07810455110873,6.91723503136755,0,0,0 | |||
|short_description=p1@LCN12 | |||
}} |
Latest revision as of 14:24, 16 September 2015
Short description: | p1@LCN12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LCN12_5end |
Coexpression cluster: | C39_epididymis_ductus_seminal_testis_acute_thyroid_CD133 |
Association with transcript: | 0bp_to_ENST00000470501, NM_178536, uc004ckb.2, uc004ckc.2_5end |
EntrezGene: | LCN12 |
HGNC: | 28733 |
UniProt: | Q6JVE5Q8IW14 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 4.94e-08 | 6 |
stromal cell of endometrium | 4.94e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
male genital duct | 1.01e-16 | 3 |
internal male genitalia | 1.01e-16 | 3 |
duct of male reproductive system | 1.16e-12 | 4 |
reproductive organ | 1.70e-12 | 48 |
internal genitalia | 9.80e-12 | 25 |
male reproductive organ | 1.07e-11 | 11 |
throat | 1.81e-11 | 2 |
pituitary gland | 1.35e-10 | 2 |
adult organism | 5.21e-10 | 114 |
reproductive structure | 1.03e-09 | 59 |
reproductive system | 1.03e-09 | 59 |
neck | 4.96e-08 | 10 |
embryonic uterus | 1.56e-07 | 22 |
entire pharyngeal arch endoderm | 2.22e-07 | 11 |
early pharyngeal endoderm | 2.22e-07 | 11 |
epididymis | 9.91e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 4.94e-08 | 6 |