FFCP PHASE1:Hg19::chr2:27333965..27333971,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10669 | |EntrezGene=10669 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16962 | |HGNC=16962 | ||
|TSSclassifier=strong | |||
|UniProt=E7EU99,B4DXY8 | |UniProt=E7EU99,B4DXY8 | ||
|association_with_transcript=0bp_to_ENST00000452318,NM_001166241_5end | |association_with_transcript=0bp_to_ENST00000452318,NM_001166241_5end | ||
|cluster_id=chr2:27333965..27333971,- | |||
|coexpression_cluster_id=C1178 | |||
|description=CAGE_peak_6_at_CGREF1_5end | |description=CAGE_peak_6_at_CGREF1_5end | ||
|id=chr2:27333965..27333971,- | |id=chr2:27333965..27333971,- | ||
|ontology_enrichment_celltype=CL:0002322!1.89e-09!5;CL:0002150!1.01e-08!3;CL:0000861!1.01e-08!3;CL:0000039!5.35e-07!7;CL:0000586!5.35e-07!7 | |ontology_enrichment_celltype=CL:0002322!1.89e-09!5;CL:0002150!1.01e-08!3;CL:0000861!1.01e-08!3;CL:0000039!5.35e-07!7;CL:0000586!5.35e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0000039;2.37e-12;7!CL:0000586;2.37e-12;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.12e-12,7;CL:0000586,2.12e-12,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.27e-32;10!UBERON:0005564;5.27e-32;10 | |||
|ontology_enrichment_disease=DOID:305!4.55e-12!106;DOID:162!9.95e-12!235;DOID:14566!2.90e-11!239;DOID:0050687!6.55e-09!143 | |||
|ontology_enrichment_disease_v019=DOID:3095;8.47e-09;22!DOID:2994;8.47e-09;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,8.03e-09,22;DOID:2994,8.03e-09,22 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.67e-23;8!UBERON:0005795;5.71e-21;1!UBERON:0003135;7.28e-17;11!UBERON:0000991;1.68e-15;21!UBERON:0003101;9.30e-09;22!UBERON:0000079;9.30e-09;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,7.47e-23,8;UBERON:0003135,7.90e-17,11;UBERON:0000991,1.77e-15,21;UBERON:0009196,1.77e-15,21;UBERON:0009117,1.77e-15,21;UBERON:0005564,1.77e-15,21;UBERON:0004176,8.57e-15,22;UBERON:0003101,9.68e-09,22;UBERON:0000079,9.68e-09,22;UBERON:0002323,2.99e-07,46;UBERON:0003133,5.83e-07,48;UBERON:0004458,7.99e-07,49 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.609868530647977,0.132529768321485,0,0.621966330092223,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.725156697549733,0,0,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0,0,0.142283686696828,1.11598390910176,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0,12.0358855019677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88491053260521,0.217294743844016,0,0,0,0,0,0,0.225595660617181,0.392125068635479,0.167821586975843,0.189753732724185,0,0,0.163232808159148,0.989471500037586,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0,15.7839590385217,0.311064574191741,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0.677294319023596,0.146178634172371,0.0821154570532092,0,0,0,0,0,0,0.195551382734803,0.240476460754601,0,0,0,0.114536596165916,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0.157566364614447,0.412079291905832,0.404421263125109,0,0,0,0,0.160753148465019,0.412618309791701,0.415440338029185,0,0,0,0,0,0,0.105600336519406,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800055529326307,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345701962667338,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0.47404083519818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0.198950775161368,0,0,0.329821550236287,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.52332849670158,0.98339014767326,0,0,0,0.18378979906969,12.033961886034,1.66713136080127,1.07185652062471,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.62758471326295,0,0,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.609868530647977,0.132529768321485,0,0.621966330092223,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.725156697549733,0,0,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0,0,0.142283686696828,1.11598390910176,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0,12.0358855019677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88491053260521,0.217294743844016,0,0,0,0,0,0,0.225595660617181,0.392125068635479,0.167821586975843,0.189753732724185,0,0,0.163232808159148,0.989471500037586,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0,15.7839590385217,0.311064574191741,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0.677294319023596,0.146178634172371,0.0821154570532092,0,0,0,0,0,0,0.195551382734803,0.240476460754601,0,0,0,0.114536596165916,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0.157566364614447,0.412079291905832,0.404421263125109,0,0,0,0,0.160753148465019,0.412618309791701,0.415440338029185,0,0,0,0,0,0,0.105600336519406,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800055529326307,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345701962667338,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0.47404083519818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0.198950775161368,0,0,0.329821550236287,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.52332849670158,0.98339014767326,0,0,0,0.18378979906969,12.033961886034,1.66713136080127,1.07185652062471,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.62758471326295,0,0,0 | ||
|short_description=p6@CGREF1 | |short_description=p6@CGREF1 | ||
}} | }} |
Latest revision as of 16:03, 16 September 2015
Short description: | p6@CGREF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_CGREF1_5end |
Coexpression cluster: | C1178_embryonic_testicular_teratocarcinoma_lymphangiectasia_epithelioid_bronchioalveolar_testis |
Association with transcript: | 0bp_to_ENST00000452318, NM_001166241_5end |
EntrezGene: | CGREF1 |
HGNC: | 16962 |
UniProt: | E7EU99B4DXY8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.12e-12 | 7 |
germ cell | 2.12e-12 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 7.47e-23 | 8 |
male reproductive organ | 7.90e-17 | 11 |
gonad | 1.77e-15 | 21 |
indifferent external genitalia | 1.77e-15 | 21 |
indifferent gonad | 1.77e-15 | 21 |
gonad primordium | 1.77e-15 | 21 |
external genitalia | 8.57e-15 | 22 |
male organism | 9.68e-09 | 22 |
male reproductive system | 9.68e-09 | 22 |
body cavity | 2.99e-07 | 46 |
reproductive organ | 5.83e-07 | 48 |
body cavity or lining | 7.99e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 8.03e-09 | 22 |
germ cell cancer | 8.03e-09 | 22 |