FFCP PHASE1:Hg19::chr2:27333965..27333971,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10669 | |EntrezGene=10669 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16962 | |HGNC=16962 | ||
|TSSclassifier=strong | |||
|UniProt=E7EU99,B4DXY8 | |UniProt=E7EU99,B4DXY8 | ||
|association_with_transcript=0bp_to_ENST00000452318,NM_001166241_5end | |association_with_transcript=0bp_to_ENST00000452318,NM_001166241_5end | ||
|cluster_id=chr2:27333965..27333971,- | |||
|coexpression_cluster_id=C1178 | |coexpression_cluster_id=C1178 | ||
|description=CAGE_peak_6_at_CGREF1_5end | |description=CAGE_peak_6_at_CGREF1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!1.89e-09!5;CL:0002150!1.01e-08!3;CL:0000861!1.01e-08!3;CL:0000039!5.35e-07!7;CL:0000586!5.35e-07!7 | |ontology_enrichment_celltype=CL:0002322!1.89e-09!5;CL:0002150!1.01e-08!3;CL:0000861!1.01e-08!3;CL:0000039!5.35e-07!7;CL:0000586!5.35e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0000039;2.37e-12;7!CL:0000586;2.37e-12;7 | |ontology_enrichment_celltype_v019=CL:0000039;2.37e-12;7!CL:0000586;2.37e-12;7 | ||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.12e-12,7;CL:0000586,2.12e-12,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.27e-32;10!UBERON:0005564;5.27e-32;10 | |ontology_enrichment_development_v019=UBERON:0009117;5.27e-32;10!UBERON:0005564;5.27e-32;10 | ||
|ontology_enrichment_disease=DOID:305!4.55e-12!106;DOID:162!9.95e-12!235;DOID:14566!2.90e-11!239;DOID:0050687!6.55e-09!143 | |ontology_enrichment_disease=DOID:305!4.55e-12!106;DOID:162!9.95e-12!235;DOID:14566!2.90e-11!239;DOID:0050687!6.55e-09!143 | ||
|ontology_enrichment_disease_v019=DOID:3095;8.47e-09;22!DOID:2994;8.47e-09;22 | |ontology_enrichment_disease_v019=DOID:3095;8.47e-09;22!DOID:2994;8.47e-09;22 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,8.03e-09,22;DOID:2994,8.03e-09,22 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.67e-23;8!UBERON:0005795;5.71e-21;1!UBERON:0003135;7.28e-17;11!UBERON:0000991;1.68e-15;21!UBERON:0003101;9.30e-09;22!UBERON:0000079;9.30e-09;22 | |ontology_enrichment_uberon_v019=UBERON:0000473;6.67e-23;8!UBERON:0005795;5.71e-21;1!UBERON:0003135;7.28e-17;11!UBERON:0000991;1.68e-15;21!UBERON:0003101;9.30e-09;22!UBERON:0000079;9.30e-09;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,7.47e-23,8;UBERON:0003135,7.90e-17,11;UBERON:0000991,1.77e-15,21;UBERON:0009196,1.77e-15,21;UBERON:0009117,1.77e-15,21;UBERON:0005564,1.77e-15,21;UBERON:0004176,8.57e-15,22;UBERON:0003101,9.68e-09,22;UBERON:0000079,9.68e-09,22;UBERON:0002323,2.99e-07,46;UBERON:0003133,5.83e-07,48;UBERON:0004458,7.99e-07,49 | |||
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| ||
|short_description=p6@CGREF1 | |short_description=p6@CGREF1 | ||
}} | }} |
Latest revision as of 16:03, 16 September 2015
Short description: | p6@CGREF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_CGREF1_5end |
Coexpression cluster: | C1178_embryonic_testicular_teratocarcinoma_lymphangiectasia_epithelioid_bronchioalveolar_testis |
Association with transcript: | 0bp_to_ENST00000452318, NM_001166241_5end |
EntrezGene: | CGREF1 |
HGNC: | 16962 |
UniProt: | E7EU99B4DXY8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.12e-12 | 7 |
germ cell | 2.12e-12 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 7.47e-23 | 8 |
male reproductive organ | 7.90e-17 | 11 |
gonad | 1.77e-15 | 21 |
indifferent external genitalia | 1.77e-15 | 21 |
indifferent gonad | 1.77e-15 | 21 |
gonad primordium | 1.77e-15 | 21 |
external genitalia | 8.57e-15 | 22 |
male organism | 9.68e-09 | 22 |
male reproductive system | 9.68e-09 | 22 |
body cavity | 2.99e-07 | 46 |
reproductive organ | 5.83e-07 | 48 |
body cavity or lining | 7.99e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 8.03e-09 | 22 |
germ cell cancer | 8.03e-09 | 22 |