FFCP PHASE1:Hg19::chr16:4421841..4421855,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=114990 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18517 | |||
|TSSclassifier=strong | |||
|UniProt=Q6EMK4 | |||
|association_with_transcript=0bp_to_ENST00000304735,NM_138440,uc002cwj.1_5end | |||
|cluster_id=chr16:4421841..4421855,+ | |||
|coexpression_cluster_id=C589 | |||
|description=CAGE_peak_1_at_VASN_5end | |||
|id=chr16:4421841..4421855,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.30e-38!180;CL:0000057!1.17e-24!75;CL:0000680!3.39e-14!57;CL:0000056!3.39e-14!57;CL:0000355!3.39e-14!57;CL:0000183!4.15e-14!59;CL:0000187!1.90e-13!54;CL:0000393!2.17e-11!60;CL:0000211!2.17e-11!60;CL:0002620!6.99e-11!23;CL:0000192!8.55e-11!42;CL:0000514!8.55e-11!42;CL:0002334!1.44e-07!12;CL:0000359!4.50e-07!32;CL:0000499!8.06e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0002620;6.04e-11;23!CL:0000057;1.03e-09;73!CL:0000134;2.77e-09;55!CL:0002320;4.80e-09;188!CL:0000192;1.33e-08;43!CL:0000187;3.51e-08;55!CL:0000723;6.14e-08;61!CL:0000048;1.01e-07;58!CL:0002334;1.31e-07;12!CL:0000499;3.48e-07;28!CL:0000349;4.39e-07;19!CL:0000393;8.33e-07;61!CL:0000211;8.33e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.51e-25,76;CL:0000680,9.48e-15,58;CL:0000056,9.48e-15,58;CL:0000355,9.48e-15,58;CL:0000187,5.40e-14,55;CL:0000393,6.91e-12,61;CL:0000211,6.91e-12,61;CL:0000192,2.57e-11,43;CL:0000514,2.57e-11,43;CL:0002620,6.09e-11,23;CL:0002334,1.32e-07,12;CL:0000499,3.38e-07,28;CL:0000359,4.14e-07,32;CL:0000349,4.51e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000514;1.33e-08;43!CL:0000355;3.54e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!9.22e-23!365;UBERON:0005256!2.02e-20!143;UBERON:0002100!3.18e-18!216;UBERON:0000914!1.42e-17!83;UBERON:0002329!1.42e-17!83;UBERON:0003077!1.42e-17!83;UBERON:0003059!1.42e-17!83;UBERON:0007282!1.42e-17!83;UBERON:0009618!1.42e-17!83;UBERON:0007285!1.42e-17!83;UBERON:0000481!2.03e-17!347;UBERON:0004290!1.77e-16!70;UBERON:0000486!1.37e-14!82;UBERON:0000468!6.51e-14!659;UBERON:0003104!8.73e-14!238;UBERON:0009142!8.73e-14!238;UBERON:0001134!9.22e-14!61;UBERON:0002036!9.22e-14!61;UBERON:0003082!9.22e-14!61;UBERON:0002385!1.79e-13!63;UBERON:0001015!1.79e-13!63;UBERON:0000383!1.79e-13!63;UBERON:0000119!7.59e-10!312;UBERON:0003102!1.02e-09!95;UBERON:0000483!1.14e-09!309;UBERON:0000467!2.73e-09!625;UBERON:0000480!4.73e-09!626;UBERON:0004923!6.30e-09!57;UBERON:0000062!3.74e-08!511;UBERON:0002199!3.79e-08!45;UBERON:0002416!3.79e-08!45;UBERON:0009569!5.01e-07!113;UBERON:0000922!7.31e-07!612;UBERON:0002050!8.72e-07!605;UBERON:0005423!8.72e-07!605;UBERON:0002097!9.90e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;5.80e-09;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.72e-21,160;UBERON:0009142,1.72e-21,160;UBERON:0005256,1.37e-18,122;UBERON:0007524,2.42e-17,73;UBERON:0002329,4.75e-17,71;UBERON:0003059,4.75e-17,71;UBERON:0007282,4.75e-17,71;UBERON:0004290,4.75e-17,71;UBERON:0009618,4.75e-17,71;UBERON:0003077,8.88e-17,72;UBERON:0007285,8.88e-17,72;UBERON:0007503,3.94e-16,78;UBERON:0002100,7.04e-16,199;UBERON:0000486,4.10e-15,83;UBERON:0001134,2.67e-14,62;UBERON:0002036,2.67e-14,62;UBERON:0003082,2.67e-14,62;UBERON:0002385,5.28e-14,64;UBERON:0001015,5.28e-14,64;UBERON:0000383,5.28e-14,64;UBERON:0000119,3.61e-09,309;UBERON:0000483,5.35e-09,306;UBERON:0004923,6.07e-09,66;UBERON:0003102,6.89e-09,99;UBERON:0002199,2.15e-08,46;UBERON:0002416,2.15e-08,46;UBERON:0000490,2.16e-08,148;UBERON:0000479,3.78e-07,773;UBERON:0002097,5.80e-07,41 | |||
|phase1_expression=128.446614144284,122.679600189533,120.234106693863,141.103350677914,113.975079078958,152.659241717565,58.2589719787114,77.0698245580734,58.5055807167638,25.8020633326584,52.3350875979321,25.3391991671,52.7533956456907,82.180858365471,138.192705678541,32.2716070296852,31.9428099852708,36.5155045193687,28.3001023298494,31.8883540418881,63.8522163594512,79.3040445339562,12.5943834337665,11.4974517061223,26.8661248732878,0,0,0,1.57345710739562,1.53531759238885,2.01260960310899,4.59710612239464,5.72291245678675,15.1599144168383,0,0,0.293600439334847,0,0.200544447470142,1.08505435357926,0,0,0,1.30858414901608,2.26725566213286,4.36651310138069,1.85943229524548,4.11167888021826,8.981484755958,2.01384674625505,4.35473201099471,5.91205574721463,3.10271112662957,3.22742341791913,14.8969135253776,1.50593871634084,3.82068610080984,7.86532195557796,2.44867113896722,3.20929027076094,17.2621023965741,0.329851300186716,1.19678194572979,2.13112375266347,3.19230162491442,7.37600792098482,13.7020894779026,4.27122730936464,1.5644487552606,5.64690996233303,6.05399502633369,7.73383035573886,13.607882659958,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0.426730222566507,0,0,0,0,1.1384259382189,0.587237189370939,1.91136614062614,0,2.80254281490768,0,0.590129310341499,0.786021525498329,1.43921049299656,0,1.30368906653436,0.473447805734733,1.94826728407911,0,0,0.221533894583621,0,0,0,0,0,0,1.4828656316206,0.802622484269139,0,0,0.766440987203842,0.68725489096526,0.506039384039006,0,0,0,0.150575119077773,0.127986611154418,0,0,0,1.20964045934839,1.60464117470104,1.59306844271079,80.4562658836074,42.9248550210327,97.175547001083,162.647618573055,91.7448376463678,256.523185079619,66.8040195522923,158.642967718659,22.4992864850481,27.7161746828205,24.0667312799165,44.5328856692223,15.6646973965793,5.56176664176644,0.97364218096405,0.174129737299267,0.930705723632056,3.10037811596945,2.28797964312051,7.05769252526173,0.198762407366705,6.881876760849,0,0.56530794192401,1.67799774483962,0,0.208994966536811,0,1.77883131343355,0.66944122552934,1.61131726843659,0.760272105718513,1.95249646038536,0.735326160691737,0,0,0,0,0,0,0.732806975721629,1.31780417436063,0,21.3686085549842,151.576445267072,61.0359066223274,92.1567898460003,472.706750994045,162.792787429046,99.8006128253307,13.8773694448616,88.0603147849261,58.1964636197563,30.5793225598192,26.1539044981534,41.3205777470663,31.6896758463999,59.7519651176181,69.2995370563312,39.9330275081115,116.271073469301,42.2764195117554,52.4468339752746,35.9554065157756,41.8516051072531,25.6723723181595,147.13591239429,116.424280013641,154.294563869819,159.278238339155,234.269514232094,29.4588199419616,35.4085411237659,23.2733857006714,118.523957637826,152.324434512113,189.750668399032,20.5312251519638,179.927804595929,124.290400292406,99.1841297426749,261.979526881683,122.632509793742,211.00760229737,148.521251352609,328.945071538228,162.135176588235,202.199453169536,123.530963977966,185.892965341634,264.482146424878,100.953602424096,94.6148105092521,5.9910864480622,6.81865301477087,1.43402297694502,9.75789649036763,4.37348235460901,8.8307396580834,11.4027160516907,5.80337957013945,4.37972830890996,189.303934119077,296.53407250692,87.0250004520627,73.8345005570847,90.2349352086982,12.1856004041039,12.6438517558576,8.43538604592187,12.5735128914929,13.0727666455444,12.8126134319992,12.5393116588953,9.61485179114196,10.3881732375525,0,47.6822030931716,175.330528827176,207.282283053614,21.5483559197112,18.6737171168749,27.1763357073446,0,6.51838724278502,13.5538570135835,2.74375713521564,4.49607013030478,0.502644862058154,18.0547468059133,171.700976898541,51.9967392639789,5.77325368101093,19.2444472258628,70.445216541493,1.58803092537181,0.925971025153221,0.951270761172991,18.9649055510226,12.0188062693282,0.246217006087397,0.468008530278475,0.297262324577456,0.93733833986777,3.19166043577833,2.69372684760534,1.79117045405697,2.03443756959773,4.21720947081732,0,0,5.39053100406007,0.720599767084807,4.16600030307054,1.8414389344729,1.90994212779139,2.34434894420094,23.9501424431787,5.75833959138612,4.50514586765876,13.1480159010066,22.3140857847268,38.3644860573286,14.3743040209062,61.5333367007022,654.511295908945,54.94467891614,152.648478919716,154.971080997935,80.7631155183126,51.0656875283802,95.9119844457958,131.539754165496,208.366696470314,87.2634756987615,45.9288019854166,126.164141803604,76.0273798016092,39.4885583948058,61.8788755606209,98.4733963143262,0,0,0,102.319813294906,122.902271342502,17.1164286048862,95.8452250139374,51.5745569601462,47.988338148292,0.112085143993527,2.1673383622212,2.15627574859517,1.92514554419623,3.30323011489202,2.60279707715243,6.18631050222156,2.51274398001523,6.37938751653163,0,0,0.414415513436035,142.199438902483,154.052520486381,80.023181991422,90.6752956274319,146.847057780064,119.065323350621,101.44446538369,111.350056899256,229.681579096545,209.01560401086,85.6851022110713,90.8940000910597,105.650475193189,117.87229679257,61.0795294383324,0.6203040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| |||
|short_description=p1@VASN | |||
}} |
Latest revision as of 16:16, 16 September 2015
Short description: | p1@VASN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VASN_5end |
Coexpression cluster: | C589_Mesenchymal_Smooth_Fibroblast_Osteoblast_tenocyte_Preadipocyte_Synoviocyte |
Association with transcript: | 0bp_to_ENST00000304735, NM_138440, uc002cwj.1_5end |
EntrezGene: | VASN |
HGNC: | 18517 |
UniProt: | Q6EMK4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.51e-25 | 76 |
muscle precursor cell | 9.48e-15 | 58 |
myoblast | 9.48e-15 | 58 |
multi-potent skeletal muscle stem cell | 9.48e-15 | 58 |
muscle cell | 5.40e-14 | 55 |
electrically responsive cell | 6.91e-12 | 61 |
electrically active cell | 6.91e-12 | 61 |
smooth muscle cell | 2.57e-11 | 43 |
smooth muscle myoblast | 2.57e-11 | 43 |
skin fibroblast | 6.09e-11 | 23 |
preadipocyte | 1.32e-07 | 12 |
stromal cell | 3.38e-07 | 28 |
vascular associated smooth muscle cell | 4.14e-07 | 32 |
extraembryonic cell | 4.51e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.72e-21 | 160 |
entire embryonic mesenchyme | 1.72e-21 | 160 |
trunk mesenchyme | 1.37e-18 | 122 |
dense mesenchyme tissue | 2.42e-17 | 73 |
somite | 4.75e-17 | 71 |
presomitic mesoderm | 4.75e-17 | 71 |
presumptive segmental plate | 4.75e-17 | 71 |
dermomyotome | 4.75e-17 | 71 |
trunk paraxial mesoderm | 4.75e-17 | 71 |
paraxial mesoderm | 8.88e-17 | 72 |
presumptive paraxial mesoderm | 8.88e-17 | 72 |
epithelial vesicle | 3.94e-16 | 78 |
trunk | 7.04e-16 | 199 |
multilaminar epithelium | 4.10e-15 | 83 |
skeletal muscle tissue | 2.67e-14 | 62 |
striated muscle tissue | 2.67e-14 | 62 |
myotome | 2.67e-14 | 62 |
muscle tissue | 5.28e-14 | 64 |
musculature | 5.28e-14 | 64 |
musculature of body | 5.28e-14 | 64 |
cell layer | 3.61e-09 | 309 |
epithelium | 5.35e-09 | 306 |
organ component layer | 6.07e-09 | 66 |
surface structure | 6.89e-09 | 99 |
integument | 2.15e-08 | 46 |
integumental system | 2.15e-08 | 46 |
unilaminar epithelium | 2.16e-08 | 148 |
tissue | 3.78e-07 | 773 |
skin of body | 5.80e-07 | 41 |