FFCP PHASE1:Hg19::chr12:120805901..120805917,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4440 | |EntrezGene=4440 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7330 | |HGNC=7330 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-29bp_to_ENST00000546985_5end | |association_with_transcript=-29bp_to_ENST00000546985_5end | ||
|cluster_id=chr12:120805901..120805917,- | |||
|coexpression_cluster_id=C2189 | |||
|description=CAGE_peak_8_at_MSI1_5end | |description=CAGE_peak_8_at_MSI1_5end | ||
|id=chr12:120805901..120805917,- | |id=chr12:120805901..120805917,- | ||
|ontology_enrichment_celltype=CL:0002322!4.12e-16!5;CL:0000133!7.99e-12!59;CL:0002319!1.11e-09!25;CL:0000333!3.12e-09!41;CL:0000221!3.72e-09!71;CL:0000243!4.30e-08!15;CL:0000125!4.30e-08!15;CL:0000030!4.30e-08!15;CL:0000339!4.30e-08!15;CL:0000095!3.99e-07!17;CL:0000123!3.99e-07!17;CL:0000128!4.16e-07!7;CL:0000126!4.16e-07!7;CL:0000127!4.16e-07!7;CL:0002453!4.16e-07!7 | |ontology_enrichment_celltype=CL:0002322!4.12e-16!5;CL:0000133!7.99e-12!59;CL:0002319!1.11e-09!25;CL:0000333!3.12e-09!41;CL:0000221!3.72e-09!71;CL:0000243!4.30e-08!15;CL:0000125!4.30e-08!15;CL:0000030!4.30e-08!15;CL:0000339!4.30e-08!15;CL:0000095!3.99e-07!17;CL:0000123!3.99e-07!17;CL:0000128!4.16e-07!7;CL:0000126!4.16e-07!7;CL:0000127!4.16e-07!7;CL:0002453!4.16e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0000047;2.90e-12;2!CL:0002319;5.57e-08;25!CL:0002321;7.41e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,3.20e-09,59;CL:0000333,1.26e-08,41;CL:0002319,5.24e-08,25;CL:0000221,1.28e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0006238;5.52e-09;10!UBERON:0003056;1.30e-08;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3093;2.60e-08;11!DOID:5409;6.87e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,2.37e-08,11;DOID:5409,6.87e-07,4 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001905;1.09e-44;2!UBERON:0002757;1.09e-44;2!UBERON:0010134;1.09e-44;2!UBERON:0005408;1.09e-44;2!UBERON:0001899;1.09e-44;2!UBERON:0003296;6.07e-23;4!UBERON:0010133;6.07e-23;4!UBERON:0002784;6.07e-23;4!UBERON:0001894;1.44e-13;7!UBERON:0001016;9.53e-08;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,9.79e-45,2;UBERON:0002757,9.79e-45,2;UBERON:0010134,9.79e-45,2;UBERON:0005408,9.79e-45,2;UBERON:0001899,9.79e-45,2;UBERON:0003296,5.75e-23,4;UBERON:0010133,5.75e-23,4;UBERON:0002784,5.75e-23,4;UBERON:0001894,1.40e-13,7;UBERON:0006222,1.40e-13,7;UBERON:0001016,1.28e-11,89;UBERON:0001017,1.55e-09,81;UBERON:0000955,4.96e-08,68;UBERON:0006238,4.96e-08,68 | |||
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| ||
|short_description=p8@MSI1 | |short_description=p8@MSI1 | ||
}} | }} |
Latest revision as of 20:11, 16 September 2015
Short description: | p8@MSI1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_MSI1_5end |
Coexpression cluster: | C2189_neuroblastoma_medulloblastoma_small_retinoblastoma_parietal_temporal_acute |
Association with transcript: | -29bp_to_ENST00000546985_5end |
EntrezGene: | MSI1 |
HGNC: | 7330 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 3.20e-09 | 59 |
migratory neural crest cell | 1.26e-08 | 41 |
neural cell | 5.24e-08 | 25 |
ectodermal cell | 1.28e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
pineal body | 9.79e-45 | 2 |
regional part of epithalamus | 9.79e-45 | 2 |
secretory circumventricular organ | 9.79e-45 | 2 |
circumventricular organ | 9.79e-45 | 2 |
epithalamus | 9.79e-45 | 2 |
gland of diencephalon | 5.75e-23 | 4 |
neuroendocrine gland | 5.75e-23 | 4 |
regional part of diencephalon | 5.75e-23 | 4 |
diencephalon | 1.40e-13 | 7 |
future diencephalon | 1.40e-13 | 7 |
nervous system | 1.28e-11 | 89 |
central nervous system | 1.55e-09 | 81 |
brain | 4.96e-08 | 68 |
future brain | 4.96e-08 | 68 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 2.37e-08 | 11 |
lung small cell carcinoma | 6.87e-07 | 4 |