FFCP PHASE1:Hg19::chr7:142494497..142494508,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12171 | |HGNC=12171 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-22bp_to_ENST00000390415_5end | |association_with_transcript=-22bp_to_ENST00000390415_5end | ||
|cluster_id=chr7:142494497..142494508,+ | |||
|coexpression_cluster_id=C861 | |||
|description=CAGE_peak_2_at_TRBJ2-3_5end | |description=CAGE_peak_2_at_TRBJ2-3_5end | ||
|id=chr7:142494497..142494508,+ | |id=chr7:142494497..142494508,+ | ||
|ontology_enrichment_celltype=CL:0000542!1.47e-30!53;CL:0000051!1.47e-30!53;CL:0000838!1.69e-29!52;CL:0000084!1.54e-19!25;CL:0000827!1.54e-19!25;CL:0000791!8.70e-18!18;CL:0000789!8.70e-18!18;CL:0002420!8.70e-18!18;CL:0002419!8.70e-18!18;CL:0000790!8.70e-18!18;CL:0000625!2.31e-11!11;CL:0002087!1.99e-10!119;CL:0000236!4.42e-10!14;CL:0000738!2.40e-09!140;CL:0000945!4.50e-09!24;CL:0000826!4.50e-09!24;CL:0002031!3.48e-07!124;CL:0000624!6.82e-07!6 | |ontology_enrichment_celltype=CL:0000542!1.47e-30!53;CL:0000051!1.47e-30!53;CL:0000838!1.69e-29!52;CL:0000084!1.54e-19!25;CL:0000827!1.54e-19!25;CL:0000791!8.70e-18!18;CL:0000789!8.70e-18!18;CL:0002420!8.70e-18!18;CL:0002419!8.70e-18!18;CL:0000790!8.70e-18!18;CL:0000625!2.31e-11!11;CL:0002087!1.99e-10!119;CL:0000236!4.42e-10!14;CL:0000738!2.40e-09!140;CL:0000945!4.50e-09!24;CL:0000826!4.50e-09!24;CL:0002031!3.48e-07!124;CL:0000624!6.82e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000542;1.70e-23;53!CL:0000236;7.58e-23;13!CL:0000084;1.22e-15;25!CL:0000791;5.01e-15;18!CL:0000789;5.01e-15;18!CL:0002419;5.01e-15;18!CL:0002577;9.83e-12;3!CL:0000945;1.44e-11;24!CL:0000625;2.26e-11;11!CL:0000623;2.28e-11;3!CL:0002536;3.70e-09;2!CL:0000815;1.66e-08;2!CL:0000792;1.66e-08;2!CL:0002677;1.66e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.20e-35,53;CL:0000051,4.20e-35,53;CL:0000838,1.03e-32,52;CL:0000236,2.01e-21,14;CL:0000084,1.43e-15,25;CL:0000827,1.43e-15,25;CL:0000791,5.43e-15,18;CL:0000789,5.43e-15,18;CL:0002420,5.43e-15,18;CL:0002419,5.43e-15,18;CL:0000790,5.43e-15,18;CL:0002087,9.50e-13,115;CL:0002577,7.10e-12,3;CL:0000945,9.43e-12,24;CL:0000826,9.43e-12,24;CL:0000623,1.15e-11,3;CL:0000825,1.15e-11,3;CL:0000625,2.66e-11,11;CL:0000738,5.93e-11,136;CL:0002031,8.77e-11,120;CL:0002536,4.03e-09,2;CL:0000037,1.31e-08,168;CL:0000815,1.33e-08,2;CL:0000792,1.33e-08,2;CL:0002677,1.33e-08,2;CL:0002032,2.29e-08,161;CL:0000837,2.29e-08,161;CL:0000988,7.10e-08,177 | |||
|ontology_enrichment_development_v019=CL:0000051;1.70e-23;53!CL:0000790;5.01e-15;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0001987;6.56e-09;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001987,5.16e-09,4;UBERON:0004340,5.16e-09,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,2.45733936501509,0,3.71350332621293,3.16520373874144,0,0,0,0,0,0,0,0.408001382488506,0,0,0,0,0.229240217243854,0.246301768349837,0.314843125254717,0.786728553697808,0,0.309632246632152,0,0,0,0,0.568676929949686,1.17440175733939,0,0.401088894940283,0.217010870715852,0,0,0.257575567634187,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0.641858054152187,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,3.82297027883492,1.77901850772711,5.9742231159311,4.40435585739614,4.02326707968138,7.27149360063348,0.954053754535364,0,0,2.29363936875137,1.32171328579026,1.12101712596307,0.526768169550154,0.590129310341499,0.786021525498329,0.822405995998037,1.67186495390678,2.60737813306872,3.78758244587787,0,1.00269411196656,1.47302953737419,1.77227115666897,0.812411591295047,0.640456598628376,0.650296737799391,0.986627427622057,1.65810010671509,1.44901542867526,1.4828656316206,0,1.04535523804977,2.26618685395132,0.383220493601921,0.68725489096526,0.759059076058509,0.95569624297229,0.651083453856419,0.950452044448374,1.20460095262218,0.255973222308837,2.49861453104692,1.89421801635213,1.64225599384209,1.00803371612366,1.06976078313403,0.144824403882799,2.43806866313962,0,0,0,0,0,0,0,0,0.221729397462564,0.527008714158756,0.130979075497713,0,0,0,0,0,0,0,0,0.39752481473341,0,1.04142150482278,0,0.838998872419812,0.825354125820202,0.208994966536811,0,0,0,0,0,0,0,0,0.267899184852239,0.22452937262617,0.450445921933289,0,0,0.183201743930407,1.31780417436063,0,0,0,0.506522046658319,0,0,0,0,0,0,0,0,0,0,0,0.70296429550139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453728732640084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0.977424915930974,0,1.44331342025273,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0.22001485746285,0,0,0,0.531876233169741,0,0,0,0,0,0.542621605391443,1.64648067356154,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,2.12961773587702,1.18218456121156,1.94064817373566,1.66845947163673,0,0,0,0.502548796003046,0.637938751653163,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0.960548020230999,2.12189300012382,1.66435439510497,1.5119514666484,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0,0,0,0,0.68888668898764,0.728364672026868,0,0,0,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0.170453254832202,0,0.330569830721956,0,0,0,0,0,0,0,1.06461206063404,0,0,0.286249773483982,0,0.316379424718726,0,0.511795582622668,0,0.318203247925937,0,0,0,0,0.606547444719948,0,0,0,0,0,0.272999822815972,0.141405431953713,0,0,0,0,0,0.655894752046633,0,0.6196469961995,0,0.860468113224309,0.491245205065606,0,0.709522128141196,0,0,0.75894634753143,0,0,0,0,0.0941438007767792,0.43050537267123,0,0,0.229723400206959,1.52234282769651,0.764637207142375,0.569647187174163,0.714695326373367,2.05681136543097,0.648473311192717,0,2.37937552888281,0,0,0,1.85803175125719,0,0,0.318852545457645,0,0.957526850661834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0,0,1.44876399560722,0,0,0,0,0,0.140669416410513,0,0.494411622680279,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0,0,0,0,0,0,0.457987967009312,0,2.04386596391473,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.134802265961354,0,0.234264445725339,1.64209310294099,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0.379864775735272,0,0,0.213452994739353,0,0,0,0,0.432164393964449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182248669974074,0,0,0,0,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.106787412567695,0,0,0.992332043623902,3.557009374163,0.121792598380896,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0,0,0,0,0.124980407962107,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.797525143673985,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0.194860308839388,0,0,0,0,0,0.59996218756479,0,0,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.0642292250964595,0,0.159633859057151,0.41023272848151,0.252071696221718,0.899044282034833,0,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0.337687923091973,0,0,0.0634158101939068,0,0.548257766857182,0,0,0,0,0,0,0,0,0.806637912890455,0.171488009437418,0,0.855046056317038,0,1.33477682270483,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05673990496671,0.0771741581079447,0,0.940634592723046,0,0,0,0,0,0,0.657887425858975,0.193373663920732,0,0,0,0,0,0.458729283404541,0.143339583151451,0,0.271965960763659,0,0,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0,0.829169439458779,0,0.213233981900981,0,0.452122368852043,0.186224142887574,0,0,0,0.435433495793923,0,0.404112318087525,0,0,0,0,0,0,0,0,0,0,1.20764276154616,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,2.45733936501509,0,3.71350332621293,3.16520373874144,0,0,0,0,0,0,0,0.408001382488506,0,0,0,0,0.229240217243854,0.246301768349837,0.314843125254717,0.786728553697808,0,0.309632246632152,0,0,0,0,0.568676929949686,1.17440175733939,0,0.401088894940283,0.217010870715852,0,0,0.257575567634187,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0.641858054152187,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,3.82297027883492,1.77901850772711,5.9742231159311,4.40435585739614,4.02326707968138,7.27149360063348,0.954053754535364,0,0,2.29363936875137,1.32171328579026,1.12101712596307,0.526768169550154,0.590129310341499,0.786021525498329,0.822405995998037,1.67186495390678,2.60737813306872,3.78758244587787,0,1.00269411196656,1.47302953737419,1.77227115666897,0.812411591295047,0.640456598628376,0.650296737799391,0.986627427622057,1.65810010671509,1.44901542867526,1.4828656316206,0,1.04535523804977,2.26618685395132,0.383220493601921,0.68725489096526,0.759059076058509,0.95569624297229,0.651083453856419,0.950452044448374,1.20460095262218,0.255973222308837,2.49861453104692,1.89421801635213,1.64225599384209,1.00803371612366,1.06976078313403,0.144824403882799,2.43806866313962,0,0,0,0,0,0,0,0,0.221729397462564,0.527008714158756,0.130979075497713,0,0,0,0,0,0,0,0,0.39752481473341,0,1.04142150482278,0,0.838998872419812,0.825354125820202,0.208994966536811,0,0,0,0,0,0,0,0,0.267899184852239,0.22452937262617,0.450445921933289,0,0,0.183201743930407,1.31780417436063,0,0,0,0.506522046658319,0,0,0,0,0,0,0,0,0,0,0,0.70296429550139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453728732640084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0.977424915930974,0,1.44331342025273,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0.22001485746285,0,0,0,0.531876233169741,0,0,0,0,0,0.542621605391443,1.64648067356154,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,2.12961773587702,1.18218456121156,1.94064817373566,1.66845947163673,0,0,0,0.502548796003046,0.637938751653163,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0.960548020230999,2.12189300012382,1.66435439510497,1.5119514666484,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0,0,0,0,0.68888668898764,0.728364672026868,0,0,0,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0.170453254832202,0,0.330569830721956,0,0,0,0,0,0,0,1.06461206063404,0,0,0.286249773483982,0,0.316379424718726,0,0.511795582622668,0,0.318203247925937,0,0,0,0,0.606547444719948,0,0,0,0,0,0.272999822815972,0.141405431953713,0,0,0,0,0,0.655894752046633,0,0.6196469961995,0,0.860468113224309,0.491245205065606,0,0.709522128141196,0,0,0.75894634753143,0,0,0,0,0.0941438007767792,0.43050537267123,0,0,0.229723400206959,1.52234282769651,0.764637207142375,0.569647187174163,0.714695326373367,2.05681136543097,0.648473311192717,0,2.37937552888281,0,0,0,1.85803175125719,0,0,0.318852545457645,0,0.957526850661834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0,0,1.44876399560722,0,0,0,0,0,0.140669416410513,0,0.494411622680279,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0,0,0,0,0,0,0.457987967009312,0,2.04386596391473,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.134802265961354,0,0.234264445725339,1.64209310294099,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0.379864775735272,0,0,0.213452994739353,0,0,0,0,0.432164393964449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182248669974074,0,0,0,0,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.106787412567695,0,0,0.992332043623902,3.557009374163,0.121792598380896,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0,0,0,0,0.124980407962107,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.797525143673985,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0.194860308839388,0,0,0,0,0,0.59996218756479,0,0,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.0642292250964595,0,0.159633859057151,0.41023272848151,0.252071696221718,0.899044282034833,0,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0.337687923091973,0,0,0.0634158101939068,0,0.548257766857182,0,0,0,0,0,0,0,0,0.806637912890455,0.171488009437418,0,0.855046056317038,0,1.33477682270483,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05673990496671,0.0771741581079447,0,0.940634592723046,0,0,0,0,0,0,0.657887425858975,0.193373663920732,0,0,0,0,0,0.458729283404541,0.143339583151451,0,0.271965960763659,0,0,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0,0.829169439458779,0,0.213233981900981,0,0.452122368852043,0.186224142887574,0,0,0,0.435433495793923,0,0.404112318087525,0,0,0,0,0,0,0,0,0,0,1.20764276154616,0 | ||
|short_description=p2@TRBJ2-3 | |short_description=p2@TRBJ2-3 | ||
}} | }} |
Latest revision as of 21:33, 16 September 2015
Short description: | p2@TRBJ2-3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TRBJ2-3_5end |
Coexpression cluster: | C861_CD19_chronic_NK_Natural_lymphangiectasia_acute_CD8 |
Association with transcript: | -22bp_to_ENST00000390415_5end |
EntrezGene: | NA |
HGNC: | 12171 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.20e-35 | 53 |
common lymphoid progenitor | 4.20e-35 | 53 |
lymphoid lineage restricted progenitor cell | 1.03e-32 | 52 |
B cell | 2.01e-21 | 14 |
T cell | 1.43e-15 | 25 |
pro-T cell | 1.43e-15 | 25 |
mature alpha-beta T cell | 5.43e-15 | 18 |
alpha-beta T cell | 5.43e-15 | 18 |
immature T cell | 5.43e-15 | 18 |
mature T cell | 5.43e-15 | 18 |
immature alpha-beta T cell | 5.43e-15 | 18 |
nongranular leukocyte | 9.50e-13 | 115 |
placental epithelial cell | 7.10e-12 | 3 |
lymphocyte of B lineage | 9.43e-12 | 24 |
pro-B cell | 9.43e-12 | 24 |
natural killer cell | 1.15e-11 | 3 |
pro-NK cell | 1.15e-11 | 3 |
CD8-positive, alpha-beta T cell | 2.66e-11 | 11 |
leukocyte | 5.93e-11 | 136 |
hematopoietic lineage restricted progenitor cell | 8.77e-11 | 120 |
amniotic epithelial cell | 4.03e-09 | 2 |
hematopoietic stem cell | 1.31e-08 | 168 |
regulatory T cell | 1.33e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.33e-08 | 2 |
naive regulatory T cell | 1.33e-08 | 2 |
hematopoietic oligopotent progenitor cell | 2.29e-08 | 161 |
hematopoietic multipotent progenitor cell | 2.29e-08 | 161 |
hematopoietic cell | 7.10e-08 | 177 |