FFCP PHASE1:Hg19::chr6:21593973..21593988,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6659 | |EntrezGene=6659 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11200 | |HGNC=11200 | ||
|TSSclassifier=strong | |||
|UniProt=Q06945 | |UniProt=Q06945 | ||
|association_with_transcript=1bp_to_ENST00000244745,NM_003107,uc003ndi.2_5end | |association_with_transcript=1bp_to_ENST00000244745,NM_003107,uc003ndi.2_5end | ||
|cluster_id=chr6:21593973..21593988,+ | |||
|coexpression_cluster_id=C1086 | |coexpression_cluster_id=C1086 | ||
|description=CAGE_peak_1_at_SOX4_5end | |description=CAGE_peak_1_at_SOX4_5end | ||
|id=chr6:21593973..21593988,+ | |id=chr6:21593973..21593988,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.82e-21!254;CL:0002321!7.76e-13!248;CL:0000220!2.74e-12!246;CL:0002139!1.61e-09!24;CL:0000012!1.03e-07!682;CL:0000115!1.35e-07!35;CL:0002078!1.82e-07!44;CL:0000548!4.29e-07!679;CL:0000004!4.29e-07!679;CL:0000255!4.29e-07!679;CL:1000449!6.26e-07!16;CL:0000071!6.36e-07!18;CL:0002546!6.36e-07!18 | |ontology_enrichment_celltype=CL:0000066!1.82e-21!254;CL:0002321!7.76e-13!248;CL:0000220!2.74e-12!246;CL:0002139!1.61e-09!24;CL:0000012!1.03e-07!682;CL:0000115!1.35e-07!35;CL:0002078!1.82e-07!44;CL:0000548!4.29e-07!679;CL:0000004!4.29e-07!679;CL:0000255!4.29e-07!679;CL:1000449!6.26e-07!16;CL:0000071!6.36e-07!18;CL:0002546!6.36e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.66e-09;24!CL:0000071;6.58e-07;18!CL:1000449;6.64e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.53e-21,253;CL:0002321,3.56e-13,250;CL:0002139,1.61e-09,24;CL:0000115,7.92e-08,36;CL:0002078,1.09e-07,45;CL:0000071,6.36e-07,18;CL:0002546,6.36e-07,18;CL:1000449,6.69e-07,15 | |||
|ontology_enrichment_development_v019=CL:0002546;6.58e-07;18 | |||
|ontology_enrichment_disease=DOID:162!4.40e-07!235 | |ontology_enrichment_disease=DOID:162!4.40e-07!235 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.20e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0003914!1.91e-08!118;UBERON:0000487!3.36e-07!22;UBERON:0006554!3.54e-07!44;UBERON:0001008!4.65e-07!45;UBERON:0004211!6.26e-07!16;UBERON:0001285!6.26e-07!16;UBERON:0007684!6.26e-07!16;UBERON:0003220!6.26e-07!16;UBERON:0004208!6.26e-07!16;UBERON:0001986!6.36e-07!18;UBERON:0004638!6.36e-07!18;UBERON:0004852!6.36e-07!18 | |ontology_enrichment_uberon=UBERON:0003914!1.91e-08!118;UBERON:0000487!3.36e-07!22;UBERON:0006554!3.54e-07!44;UBERON:0001008!4.65e-07!45;UBERON:0004211!6.26e-07!16;UBERON:0001285!6.26e-07!16;UBERON:0007684!6.26e-07!16;UBERON:0003220!6.26e-07!16;UBERON:0004208!6.26e-07!16;UBERON:0001986!6.36e-07!18;UBERON:0004638!6.36e-07!18;UBERON:0004852!6.36e-07!18 | ||
|ontology_enrichment_uberon_v019=UBERON:0000490;2.59e-08;33!UBERON:0000922;2.17e-07;49!UBERON:0006554;2.62e-07;30!UBERON:0001008;2.62e-07;30!UBERON:0000487;3.48e-07;22!UBERON:0004638;6.58e-07;18!UBERON:0001986;6.58e-07;18!UBERON:0004852;6.58e-07;18!UBERON:0006555;6.64e-07;15!UBERON:0004819;6.64e-07;15!UBERON:0001285;6.64e-07;15!UBERON:0007684;6.64e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,2.41e-08,117;UBERON:0000487,3.36e-07,22;UBERON:0004638,6.36e-07,18;UBERON:0001986,6.36e-07,18;UBERON:0004852,6.36e-07,18;UBERON:0004211,6.69e-07,15;UBERON:0009773,6.69e-07,15;UBERON:0001231,6.69e-07,15;UBERON:0001285,6.69e-07,15;UBERON:0007684,6.69e-07,15;UBERON:0004208,6.69e-07,15 | |||
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| ||
|short_description=p1@SOX4 | |short_description=p1@SOX4 | ||
}} | }} |
Latest revision as of 03:47, 17 September 2015
Short description: | p1@SOX4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SOX4_5end |
Coexpression cluster: | C1086_occipital_parietal_temporal_duodenum_small_Neurons_transitionalcell |
Association with transcript: | 1bp_to_ENST00000244745, NM_003107, uc003ndi.2_5end |
EntrezGene: | SOX4 |
HGNC: | 11200 |
UniProt: | Q06945 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.53e-21 | 253 |
embryonic cell | 3.56e-13 | 250 |
endothelial cell of vascular tree | 1.61e-09 | 24 |
endothelial cell | 7.92e-08 | 36 |
meso-epithelial cell | 1.09e-07 | 45 |
blood vessel endothelial cell | 6.36e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.36e-07 | 18 |
epithelial cell of nephron | 6.69e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 2.41e-08 | 117 |
simple squamous epithelium | 3.36e-07 | 22 |
blood vessel endothelium | 6.36e-07 | 18 |
endothelium | 6.36e-07 | 18 |
cardiovascular system endothelium | 6.36e-07 | 18 |
nephron epithelium | 6.69e-07 | 15 |
renal tubule | 6.69e-07 | 15 |
nephron tubule | 6.69e-07 | 15 |
nephron | 6.69e-07 | 15 |
uriniferous tubule | 6.69e-07 | 15 |
nephrogenic mesenchyme | 6.69e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.20e-07 | 235 |