FFCP PHASE1:Hg19::chr6:21597499..21597513,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:21597499..21597513,+
|short_description=p16@SOX4
|description=CAGE_peak_16_at_SOX4_5end
|association_with_transcript=-147bp_to_AJ420500_5end
|EntrezGene=6...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6659 | |EntrezGene=6659 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11200 | |HGNC=11200 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-147bp_to_AJ420500_5end | |||
|cluster_id=chr6:21597499..21597513,+ | |||
|coexpression_cluster_id=C1086 | |||
|description=CAGE_peak_16_at_SOX4_5end | |||
|id=chr6:21597499..21597513,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.06e-11!254 | |||
|ontology_enrichment_celltype_v019=CL:0000540;1.51e-18;6!CL:0000404;1.51e-18;6!CL:0002322;7.17e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.48e-18,6;CL:0000031,1.48e-18,6;CL:0000404,1.48e-18,6;CL:0000047,7.75e-14,8;CL:0002322,6.79e-08,5 | |||
|ontology_enrichment_development_v019=CL:0000031;1.51e-18;6 | |||
|ontology_enrichment_disease=DOID:162!1.29e-11!235;DOID:14566!1.18e-10!239;DOID:0050687!4.52e-09!143;DOID:305!7.22e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;3.34e-07;49 | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.281908808191942,0,0,0.872338524100369,0,0,0,0.491467873003018,0,0,0,0.37129905888014,0,1.34465029290355,1.20538905604795,0.730310090387373,0.487932798790507,0,0.204000691244253,0.313454721478088,0.286235987131057,0,0.125542639594803,0.152826811495903,0.328402357799783,0.236132343941038,0,0,0.154816123316076,0.919421224478927,0,0,0.154934401160603,0.142169232487422,0.293600439334847,0,0.200544447470142,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0.569212969109448,0,0,0,0,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0.361439152384566,0,0,0,0.973269740605272,0.189069634328136,0.886917589850256,0.43917392846563,0.130979075497713,0,0,0,0.348259474598534,0,0.476981248610684,0,0.371457501329565,0,0,0.347140501607594,0,0,1.10047216776027,0.208994966536811,0,1.06729878806013,0.33472061276467,0.805658634218294,0.760272105718513,0.24406205754817,0,0,0.357198913136319,0.44905874525234,0.112611480483322,1.53316637465883,0,0.732806975721629,0,0,0.436094052142534,0,0.12663051166458,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0,0,0,0.150238058906597,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0.276149695926898,0,0,0.10075209822764,0,0.57978255948989,0.272746120590835,0.286804595389004,1.09776335516636,0.132529768321485,1.85910308591229,1.24393266018445,0.756962552626885,0.36497735907583,0,0.643240938192885,0,0.464367928031979,0,0.236613600079688,0.168584690078102,0,0.330881918197182,0.435758888184812,0,0.134831308160164,0,0,0,0,0,0,0,0,0,1.32438929824395,0.491953754172454,0.171567810298526,0.109750285408626,0,0.100528972411631,0,0,0,0,0.695582429850461,0.234817388471643,0.433099343283221,0.925971025153221,0.190254152234598,0.790204397959275,0,0,0,0,0.93733833986777,0.16798212819886,0,0,0,0,0,0.176096868026452,0.414656231081544,0.432359860250884,0.12624243342638,0.063497894292169,0,0,0,0.308482478109971,0,0.285826432630578,0,0,0,0.258543431515556,0,0,0.26593811658487,2.08014873822732,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0.299918973546171,0,0,0,0,1.14861935834114,0,0,0.410952645100767,0.179060963239896,0,0,0,0.128343036279748,0,0,3.09315525111078,0.837581326671744,2.55175500661265,0,0,0,0.36807447515742,0.500170521059677,0.271265023699736,0.831883446123229,0,0.315404830067869,0.234282829985426,0.601892199455438,0,0,0,0.184369168541703,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0.30239029332968,0.248107807818777,0,0.280660094433074,0.128139149255701,0.511707249066704,0.64341568457443,0,0,0,0,0,0.232420756919918,0.846016147141356,0.601519410909855,0.184161977871793,0,0.364182336013434,0.131124414959424,0.451199612907412,0.15403067420883,0,1.46139224653261,0.527758144464379,0,0,0,1.54227252690289,1.08378575017541,0,0,0,0.223874754722178,0,0,0,0,0,0,0.457847324091717,0.660075999364704,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0.495854746082934,0.192190067365106,0.382838137483752,0.809262246844399,0,0,0,0,0,0,0,0.286249773483982,0,0,0.190630193923825,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0.243713489631284,0,0.136499911407986,0.424216295861138,0,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0.0982490410131212,0,0,0,0,0,0,0.192444225451024,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0.371606350251437,1.44269212976445,1.06712765022621,2.07254154547469,0.798317485731266,0,0.846694330895531,0.649243880549111,1.40398589056729,0.912938716132769,0,0,0.338583555603207,1.605880751037,0.403599414382095,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0.606802608747567,0,0,0,0,0,0,0,0.222617410045812,0.329607748453519,0.844501632511974,0.19924798825107,0,0.251932747854276,0,0.123084805461069,0,0,1.07412704805365,0.511572370226872,0,0,0,0,0,1.99613798001194,0.260427761085233,0.0874599999961957,0,0,1.27126825146383,0,0.689486746482929,0.874813840149763,0.347249989866585,0,0,0,0.110579259931225,0,0,0.10893846351899,0.278847488557207,0.230850775511391,0.569710279235006,0.23056390438806,0.538545866458633,0.325942115766024,0,0.641183153813036,0.533034776018635,0,0.470940769185074,0.166211681900156,0,0,0,0,0.317873157960757,0.210998064528027,0.163232808159148,0.141353071433941,0,0,0,0.611030144933625,0,0.370691816839509,0.313265848516366,0,0,0,0.182454789215666,0,0.485560759068186,0,0,2.75465485467441,0,0.450970258243478,2.28114021073944,0,0,0,0,0.284609546029793,1.10939738410511,0.347119476670262,0,0,0.17472666824203,0,0,0.0730893170861856,0,0,0,0.225980740780532,0.137041924646751,0,0,1.36885967914362,0,0,0.799238438328521,0.144090417154106,1.03082936549324,0,0,0,0,0.815425236441684,0.209205692624666,0.203996435272644,0,0,0,1.27746588066972,0.429765441419957,1.57732412567589,0,0,0,0,0,0,0,0.360299883542404,0,0.0787831823072236,0,0.13480708770837,0.78741985211799,0.0846733320657845,0,0,3.05430982083536,2.06309154895851,2.9080823662043,0,0,0.0607495566580247,0,0,0,0,0.35857467866569,0,1.42939065274673,0,0.5085370753095,0,0,0,0,0.082092520749339,0.170388021785422,0,0,0,0,0,0,1.40963004463334,0,0.157204305099666,0.414239055347196,0,0,0,0,0,0,0,0,0.314108192500469,0,0.122026264901963,0,0,0,0,0.415045904808692,0,0,0,0,0,0.724605143054126,0,0.233713309847224,0,0,0,0,0,0,0.310874401165561,0.147855149989634,0,0,0.155262956876259,0,0,0,0.150257608997218,0,0,0.181848659202559,0.107410557042488,0,0,0,0.343395705182793,0.673498977531838,0,0,0.428883182749851,0,0.906823702049089,0.694567422971502,0,0.179088841081487,0.617602894321944,0.657852148736121,0,0,0,0.512483037175893,0,0,0.138258436151731,0.194860308839388,1.32864840313363,0.327130788511688,0.327609848846413,1.2288645437686,0,0.59996218756479,0,0,0,0,0.139879507719444,0.622077260032973,0.383683113910955,0.215649622793364,0.157265941855896,0.54604819096007,0.169732529954025,0.850299680406731,0,0,0,0.788617450012533,0,0,0.3062454773532,0,0,0,0,8.82250936776013,0,0,0,0.0981477185010256,0.353909170043221,0,0,0,0,0.795664888465099,0.0752103283492573,0.20170506870352,0,0.523813388962845,0,0.887136517302272,0,0,0.413373593002368,0,12.0334457984008,0,0,0,0.511049710558381,0,0,0,0,0.0887023701626388,0,1.02892805662451,0,0,0.118193840883968,0.667388411352415,0.156986185701028,0,0.280272163313789,1.82631744101899,0.431855182437243,0.9555033757741,0,0.632054446930906,0,0.347716544605159,0,0,0,0,0,0,0,0,0.22910686854405,1.24082554265728,0.955538938977433,0.782988022584546,0,0.121917924982269,0,0,0,0.971421986118279,0.233939463462106,5.17272015419557,0.713520544665411,1.6941912305844,0.109940516745429,0.603851374266694,0,0.655678681511872,0,0,0.235676547101626,0,0,0.8453114551668,0.509781344063451,0,0,0,0.357107877211315,0,1.7653100671617,0,0,0,0.631086248772738,0,6.98161104544604,0,0.371995018166751,0,0,0.756998549010474,0.109265571963696,0.253397002022874,0.305966489225945,0.534434810531121,0.18378979906969,1.50424523575425,0.151557396436479,0,0,0,0,0.714193294391221,0.129177819672012,0.248298857183432,0.112131862580613,0.190941474834495,0,0.217716747896961,0.684466602170562,0,0.0717222053926763,0,0.488419611665847,0.213454691755431,0,0.269475606319761,0,0,0.813792356631477,0,0,0.320568492303233 | |phase1_expression=0.363356758541113,0.214100523890983,0.281908808191942,0,0,0.872338524100369,0,0,0,0.491467873003018,0,0,0,0.37129905888014,0,1.34465029290355,1.20538905604795,0.730310090387373,0.487932798790507,0,0.204000691244253,0.313454721478088,0.286235987131057,0,0.125542639594803,0.152826811495903,0.328402357799783,0.236132343941038,0,0,0.154816123316076,0.919421224478927,0,0,0.154934401160603,0.142169232487422,0.293600439334847,0,0.200544447470142,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0.569212969109448,0,0,0,0,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0.361439152384566,0,0,0,0.973269740605272,0.189069634328136,0.886917589850256,0.43917392846563,0.130979075497713,0,0,0,0.348259474598534,0,0.476981248610684,0,0.371457501329565,0,0,0.347140501607594,0,0,1.10047216776027,0.208994966536811,0,1.06729878806013,0.33472061276467,0.805658634218294,0.760272105718513,0.24406205754817,0,0,0.357198913136319,0.44905874525234,0.112611480483322,1.53316637465883,0,0.732806975721629,0,0,0.436094052142534,0,0.12663051166458,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0,0,0,0.150238058906597,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0.276149695926898,0,0,0.10075209822764,0,0.57978255948989,0.272746120590835,0.286804595389004,1.09776335516636,0.132529768321485,1.85910308591229,1.24393266018445,0.756962552626885,0.36497735907583,0,0.643240938192885,0,0.464367928031979,0,0.236613600079688,0.168584690078102,0,0.330881918197182,0.435758888184812,0,0.134831308160164,0,0,0,0,0,0,0,0,0,1.32438929824395,0.491953754172454,0.171567810298526,0.109750285408626,0,0.100528972411631,0,0,0,0,0.695582429850461,0.234817388471643,0.433099343283221,0.925971025153221,0.190254152234598,0.790204397959275,0,0,0,0,0.93733833986777,0.16798212819886,0,0,0,0,0,0.176096868026452,0.414656231081544,0.432359860250884,0.12624243342638,0.063497894292169,0,0,0,0.308482478109971,0,0.285826432630578,0,0,0,0.258543431515556,0,0,0.26593811658487,2.08014873822732,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0.299918973546171,0,0,0,0,1.14861935834114,0,0,0.410952645100767,0.179060963239896,0,0,0,0.128343036279748,0,0,3.09315525111078,0.837581326671744,2.55175500661265,0,0,0,0.36807447515742,0.500170521059677,0.271265023699736,0.831883446123229,0,0.315404830067869,0.234282829985426,0.601892199455438,0,0,0,0.184369168541703,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0.30239029332968,0.248107807818777,0,0.280660094433074,0.128139149255701,0.511707249066704,0.64341568457443,0,0,0,0,0,0.232420756919918,0.846016147141356,0.601519410909855,0.184161977871793,0,0.364182336013434,0.131124414959424,0.451199612907412,0.15403067420883,0,1.46139224653261,0.527758144464379,0,0,0,1.54227252690289,1.08378575017541,0,0,0,0.223874754722178,0,0,0,0,0,0,0.457847324091717,0.660075999364704,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0.495854746082934,0.192190067365106,0.382838137483752,0.809262246844399,0,0,0,0,0,0,0,0.286249773483982,0,0,0.190630193923825,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0.243713489631284,0,0.136499911407986,0.424216295861138,0,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0.0982490410131212,0,0,0,0,0,0,0.192444225451024,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0.371606350251437,1.44269212976445,1.06712765022621,2.07254154547469,0.798317485731266,0,0.846694330895531,0.649243880549111,1.40398589056729,0.912938716132769,0,0,0.338583555603207,1.605880751037,0.403599414382095,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0.606802608747567,0,0,0,0,0,0,0,0.222617410045812,0.329607748453519,0.844501632511974,0.19924798825107,0,0.251932747854276,0,0.123084805461069,0,0,1.07412704805365,0.511572370226872,0,0,0,0,0,1.99613798001194,0.260427761085233,0.0874599999961957,0,0,1.27126825146383,0,0.689486746482929,0.874813840149763,0.347249989866585,0,0,0,0.110579259931225,0,0,0.10893846351899,0.278847488557207,0.230850775511391,0.569710279235006,0.23056390438806,0.538545866458633,0.325942115766024,0,0.641183153813036,0.533034776018635,0,0.470940769185074,0.166211681900156,0,0,0,0,0.317873157960757,0.210998064528027,0.163232808159148,0.141353071433941,0,0,0,0.611030144933625,0,0.370691816839509,0.313265848516366,0,0,0,0.182454789215666,0,0.485560759068186,0,0,2.75465485467441,0,0.450970258243478,2.28114021073944,0,0,0,0,0.284609546029793,1.10939738410511,0.347119476670262,0,0,0.17472666824203,0,0,0.0730893170861856,0,0,0,0.225980740780532,0.137041924646751,0,0,1.36885967914362,0,0,0.799238438328521,0.144090417154106,1.03082936549324,0,0,0,0,0.815425236441684,0.209205692624666,0.203996435272644,0,0,0,1.27746588066972,0.429765441419957,1.57732412567589,0,0,0,0,0,0,0,0.360299883542404,0,0.0787831823072236,0,0.13480708770837,0.78741985211799,0.0846733320657845,0,0,3.05430982083536,2.06309154895851,2.9080823662043,0,0,0.0607495566580247,0,0,0,0,0.35857467866569,0,1.42939065274673,0,0.5085370753095,0,0,0,0,0.082092520749339,0.170388021785422,0,0,0,0,0,0,1.40963004463334,0,0.157204305099666,0.414239055347196,0,0,0,0,0,0,0,0,0.314108192500469,0,0.122026264901963,0,0,0,0,0.415045904808692,0,0,0,0,0,0.724605143054126,0,0.233713309847224,0,0,0,0,0,0,0.310874401165561,0.147855149989634,0,0,0.155262956876259,0,0,0,0.150257608997218,0,0,0.181848659202559,0.107410557042488,0,0,0,0.343395705182793,0.673498977531838,0,0,0.428883182749851,0,0.906823702049089,0.694567422971502,0,0.179088841081487,0.617602894321944,0.657852148736121,0,0,0,0.512483037175893,0,0,0.138258436151731,0.194860308839388,1.32864840313363,0.327130788511688,0.327609848846413,1.2288645437686,0,0.59996218756479,0,0,0,0,0.139879507719444,0.622077260032973,0.383683113910955,0.215649622793364,0.157265941855896,0.54604819096007,0.169732529954025,0.850299680406731,0,0,0,0.788617450012533,0,0,0.3062454773532,0,0,0,0,8.82250936776013,0,0,0,0.0981477185010256,0.353909170043221,0,0,0,0,0.795664888465099,0.0752103283492573,0.20170506870352,0,0.523813388962845,0,0.887136517302272,0,0,0.413373593002368,0,12.0334457984008,0,0,0,0.511049710558381,0,0,0,0,0.0887023701626388,0,1.02892805662451,0,0,0.118193840883968,0.667388411352415,0.156986185701028,0,0.280272163313789,1.82631744101899,0.431855182437243,0.9555033757741,0,0.632054446930906,0,0.347716544605159,0,0,0,0,0,0,0,0,0.22910686854405,1.24082554265728,0.955538938977433,0.782988022584546,0,0.121917924982269,0,0,0,0.971421986118279,0.233939463462106,5.17272015419557,0.713520544665411,1.6941912305844,0.109940516745429,0.603851374266694,0,0.655678681511872,0,0,0.235676547101626,0,0,0.8453114551668,0.509781344063451,0,0,0,0.357107877211315,0,1.7653100671617,0,0,0,0.631086248772738,0,6.98161104544604,0,0.371995018166751,0,0,0.756998549010474,0.109265571963696,0.253397002022874,0.305966489225945,0.534434810531121,0.18378979906969,1.50424523575425,0.151557396436479,0,0,0,0,0.714193294391221,0.129177819672012,0.248298857183432,0.112131862580613,0.190941474834495,0,0.217716747896961,0.684466602170562,0,0.0717222053926763,0,0.488419611665847,0.213454691755431,0,0.269475606319761,0,0,0.813792356631477,0,0,0.320568492303233 | ||
|short_description=p16@SOX4 | |||
}} | }} |
Latest revision as of 03:55, 17 September 2015
Short description: | p16@SOX4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_SOX4_5end |
Coexpression cluster: | C1086_occipital_parietal_temporal_duodenum_small_Neurons_transitionalcell |
Association with transcript: | -147bp_to_AJ420500_5end |
EntrezGene: | SOX4 |
HGNC: | 11200 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.48e-18 | 6 |
neuroblast | 1.48e-18 | 6 |
electrically signaling cell | 1.48e-18 | 6 |
neuronal stem cell | 7.75e-14 | 8 |
embryonic stem cell | 6.79e-08 | 5 |