FFCP PHASE1:Hg19::chr19:3366625..3366629,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4782 | |EntrezGene=4782 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7786 | |HGNC=7786 | ||
|TSSclassifier=strong | |||
|UniProt=P08651 | |UniProt=P08651 | ||
|association_with_transcript=-5bp_to_ENST00000269778_5end | |association_with_transcript=-5bp_to_ENST00000269778_5end | ||
|cluster_id=chr19:3366625..3366629,+ | |||
|description=CAGE_peak_4_at_NFIC_5end | |description=CAGE_peak_4_at_NFIC_5end | ||
|id=chr19:3366625..3366629,+ | |id=chr19:3366625..3366629,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.51e-29!180;CL:0000057!2.58e-20!75;CL:0000183!5.96e-13!59;CL:0000220!1.37e-12!246;CL:0000222!1.38e-12!119;CL:0002321!5.37e-12!248;CL:0000187!2.37e-11!54;CL:0000680!5.84e-11!57;CL:0000056!5.84e-11!57;CL:0000355!5.84e-11!57;CL:0002620!9.92e-10!23;CL:0000192!6.24e-09!42;CL:0000514!6.24e-09!42;CL:0000548!8.03e-09!679;CL:0000004!8.03e-09!679;CL:0000255!8.03e-09!679;CL:0000393!1.07e-08!60;CL:0000211!1.07e-08!60;CL:0002371!1.90e-08!591;CL:0000012!3.42e-08!682;CL:0000144!1.20e-07!625;CL:0000359!8.25e-07!32 | |ontology_enrichment_celltype=CL:0000055!2.51e-29!180;CL:0000057!2.58e-20!75;CL:0000183!5.96e-13!59;CL:0000220!1.37e-12!246;CL:0000222!1.38e-12!119;CL:0002321!5.37e-12!248;CL:0000187!2.37e-11!54;CL:0000680!5.84e-11!57;CL:0000056!5.84e-11!57;CL:0000355!5.84e-11!57;CL:0002620!9.92e-10!23;CL:0000192!6.24e-09!42;CL:0000514!6.24e-09!42;CL:0000548!8.03e-09!679;CL:0000004!8.03e-09!679;CL:0000255!8.03e-09!679;CL:0000393!1.07e-08!60;CL:0000211!1.07e-08!60;CL:0002371!1.90e-08!591;CL:0000012!3.42e-08!682;CL:0000144!1.20e-07!625;CL:0000359!8.25e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0002620;8.28e-11;23!CL:0000057;2.47e-09;73!CL:0000359;3.49e-07;32!CL:0000192;6.80e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.53e-24,76;CL:0002620,6.64e-11,23;CL:0000187,2.46e-10,55;CL:0000680,8.29e-10,58;CL:0000056,8.29e-10,58;CL:0000355,8.29e-10,58;CL:0000222,2.77e-09,121;CL:0000192,2.24e-08,43;CL:0000514,2.24e-08,43;CL:0000393,3.29e-08,61;CL:0000211,3.29e-08,61;CL:0000359,6.70e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;6.80e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!7.57e-18!365;UBERON:0005256!7.93e-16!143;UBERON:0000914!2.01e-15!83;UBERON:0002329!2.01e-15!83;UBERON:0003077!2.01e-15!83;UBERON:0003059!2.01e-15!83;UBERON:0007282!2.01e-15!83;UBERON:0009618!2.01e-15!83;UBERON:0007285!2.01e-15!83;UBERON:0003102!3.13e-14!95;UBERON:0000486!4.40e-14!82;UBERON:0002100!1.03e-13!216;UBERON:0003104!6.10e-13!238;UBERON:0009142!6.10e-13!238;UBERON:0004290!1.41e-12!70;UBERON:0000481!2.40e-11!347;UBERON:0000119!4.26e-11!312;UBERON:0000468!1.34e-10!659;UBERON:0001134!1.44e-10!61;UBERON:0002036!1.44e-10!61;UBERON:0003082!1.44e-10!61;UBERON:0000483!1.46e-10!309;UBERON:0003914!1.91e-10!118;UBERON:0000467!2.44e-10!625;UBERON:0002385!2.60e-10!63;UBERON:0001015!2.60e-10!63;UBERON:0000383!2.60e-10!63;UBERON:0000480!2.86e-10!626;UBERON:0000477!3.56e-09!286;UBERON:0001637!3.02e-08!42;UBERON:0003509!3.02e-08!42;UBERON:0004572!3.02e-08!42;UBERON:0002199!6.32e-08!45;UBERON:0002416!6.32e-08!45;UBERON:0002049!9.70e-08!79;UBERON:0007798!9.70e-08!79;UBERON:0002097!1.95e-07!40;UBERON:0000490!2.36e-07!138;UBERON:0000923!3.02e-07!604;UBERON:0005291!3.02e-07!604;UBERON:0006598!3.02e-07!604;UBERON:0002532!3.02e-07!604;UBERON:0003103!3.03e-07!69;UBERON:0002050!4.58e-07!605;UBERON:0005423!4.58e-07!605;UBERON:0004111!4.75e-07!241;UBERON:0001981!4.77e-07!60;UBERON:0007500!4.77e-07!60;UBERON:0004537!4.77e-07!60;UBERON:0006965!4.77e-07!60;UBERON:0000926!4.82e-07!448;UBERON:0004120!4.82e-07!448;UBERON:0006603!4.82e-07!448;UBERON:0000055!7.46e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0003102;3.11e-07;50 | |||
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|phase1_expression=0.54503513781167,0.428201047781966,1.83240725324762,1.0007329835313,0.893922188854576,2.61701557230111,0,1.26343974685366,1.04474251279935,2.94880723801811,6.97801167972428,0.436882744260345,0.791300934685361,1.60896258848061,2.65117900582333,2.01697543935533,0,0.730310090387373,0.487932798790507,1.84681587115182,2.04000691244253,1.25381888591235,0.85870796139317,1.36874425072884,1.25542639594803,0.229240217243854,0.0821005894499457,0.314843125254717,0,0,0.154816123316076,0,1.8072355126695,2.21852406100073,0,0,0,0,0.601633342410425,0,0,0,0.515151135268373,0.290796477559129,0,0.242584061187816,0.464858073811369,0,0.619412741790207,0,0,0,0,0,0,0.376484679085209,0,0.224723484445085,0,0.320929027076094,0,0,0,0,0.290209238628584,0,0,0.251248665256743,1.0429658368404,0.217188844705117,0,0,0.316462387440884,0,0.212604299965044,0,0.112328631146495,0.150176892841506,0.64290234678832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,1.34140171940727,0.767175371061182,3.61439152384566,2.00535164254356,2.17269778441236,0,3.89307896242109,0.378139268656271,0.443458794925128,0.702678285545008,0.458426764241994,4.73583874780305,1.85392221392215,0,0,0,0,0,0,1.98762407366705,0.860234595106124,0.694281003215189,0.56530794192401,1.67799774483962,0.825354125820202,1.25396979922086,0,0,0.33472061276467,0.402829317109147,0,0.976248230192678,0,0.81014194788176,0.446498641420399,0.673588117878509,0.450445921933289,1.53316637465883,0.949265659568129,1.09921046358244,0,0,2.18047026071267,0.993943903390637,1.39293562831038,1.72131935057184,2.0078563452417,1.41867352879343,0.560677600142307,1.06748995729705,0.49333509683432,0.622422070799533,0.942974704487816,1.30769522490767,2.11900398702904,0,4.21778577300834,0.936480230490962,4.56377457235559,2.09228152772521,2.70099346880659,3.56120477609889,2.66856532734272,0.816616685019573,1.84251475967652,2.47981874821837,3.56400857184616,0.494533858557114,10.0117749813183,6.46756327634615,1.17835279767846,2.75260743718321,1.6623846929051,2.63386572528503,1.83892677479412,2.25357088359895,0.340296549480063,3.40840307808838,1.2813443329114,0.847727604638247,1.80054657650641,1.33968288009971,2.31876486041066,2.04728541964749,1.68776332241266,1.65642908774038,3.78650661366172,1.01254888506529,1.2931684545505,2.84007674013291,1.91428986632517,2.20428770003634,0.386521706326594,0.818238361772504,1.14721838155602,0,0,0.116193942869518,0,0,0,0,0.643240938192885,1.38134921352481,0.928735856063958,2.88751792667834,0.591534000199219,0.674338760312407,1.68707720918437,0.661763836394364,1.74303555273925,0.71181185733329,0.943819157121151,0.98110732562673,0.769494313892781,0,0,2.4694440679884,1.47008711385542,2.53510069643662,0,0,0,0.122988438543114,1.02940686179115,2.30475599358114,1.1240175325762,1.50793458617446,1.01847289674383,3.25808305310325,2.07986957055916,0,0.34779121492523,0.939269553886573,0.721832238805369,1.85194205030644,0.190254152234598,0,1.71697232418975,0.246217006087397,0,0,0.93733833986777,0.503946384596579,0.708875486211932,0.895585227028483,0.290633938513962,1.91691339582606,0,0.088048434013226,0,0,0.12624243342638,0.063497894292169,0.381988425558278,0,1.71072446022705,0.308482478109971,0.300343057843917,0.285826432630578,1.68196626518041,1.30788020649984,1.1734125731352,0.646358578788889,10.7296933755565,0.845302752556,1.86156681609409,2.08014873822732,2.82928111688356,0,2.66422179016099,1.00084595560703,2.71310802695722,2.46972101034231,0.65147236858747,1.77695974371273,0.791951872933429,1.50719688529793,0.871533458600294,2.19940580600526,0,1.00451418286425,0,0.958499421966331,0,1.42636905040718,0,1.2328579353023,0.895304816199478,0,0,0,0,0.76228387266739,0,0,0.167516265334349,0.637938751653163,2.24702107184155,0,0.828831026872071,1.34960640891054,1.50051156317903,2.98391526069709,0.831883446123229,1.42743191037729,0.946214490203608,1.99140405487612,0.902838299183157,2.27407504055985,1.03473071292505,2.65690239414175,1.65932251687533,1.73767228936166,2.93701736194111,3.43143423810856,0,0,0.213455115606889,0,0,0.30239029332968,1.98486246255021,1.53461973288062,1.68396056659844,1.15325234330131,1.53512174720011,1.28683136914886,0,2.62156479464514,1.77561725313127,3.03870477251094,1.55776328755086,2.32420756919918,0.483437798366489,0.802025881213139,1.01289087829486,0.918515585316854,0.546273504020151,1.18011973463482,1.80479845162965,0.693138033939733,1.56869953835371,4.38417673959782,0.633309773357254,1.13733384070897,0.850468526382578,1.51141141271498,1.54227252690289,1.08378575017541,2.00675909541941,2.03901018436031,0.831076008928724,1.56712328305525,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0.309123034943167,0.824125183365091,0.330037999682352,1.72279661398852,1.95018073810956,1.6068392984416,2.70678011217942,0.462145851343933,1.22802939780904,1.51620229732984,0.966782203814463,1.30515024522806,1.27839941124151,1.51354460599453,0.826424576804891,0.576570202095319,0.38283813748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| ||
|short_description=p4@NFIC | |short_description=p4@NFIC | ||
}} | }} |
Latest revision as of 06:34, 17 September 2015
Short description: | p4@NFIC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NFIC_5end |
Coexpression cluster: | NA |
Association with transcript: | -5bp_to_ENST00000269778_5end |
EntrezGene: | NFIC |
HGNC: | 7786 |
UniProt: | P08651 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.53e-24 | 76 |
skin fibroblast | 6.64e-11 | 23 |
muscle cell | 2.46e-10 | 55 |
muscle precursor cell | 8.29e-10 | 58 |
myoblast | 8.29e-10 | 58 |
multi-potent skeletal muscle stem cell | 8.29e-10 | 58 |
mesodermal cell | 2.77e-09 | 121 |
smooth muscle cell | 2.24e-08 | 43 |
smooth muscle myoblast | 2.24e-08 | 43 |
electrically responsive cell | 3.29e-08 | 61 |
electrically active cell | 3.29e-08 | 61 |
vascular associated smooth muscle cell | 6.70e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 6.38e-14 | 78 |
multilaminar epithelium | 1.57e-13 | 83 |
surface structure | 1.72e-12 | 99 |
somite | 4.64e-12 | 71 |
presomitic mesoderm | 4.64e-12 | 71 |
presumptive segmental plate | 4.64e-12 | 71 |
dermomyotome | 4.64e-12 | 71 |
trunk paraxial mesoderm | 4.64e-12 | 71 |
dense mesenchyme tissue | 7.11e-12 | 73 |
paraxial mesoderm | 1.10e-11 | 72 |
presumptive paraxial mesoderm | 1.10e-11 | 72 |
skeletal muscle tissue | 4.83e-10 | 62 |
striated muscle tissue | 4.83e-10 | 62 |
myotome | 4.83e-10 | 62 |
muscle tissue | 2.40e-09 | 64 |
musculature | 2.40e-09 | 64 |
musculature of body | 2.40e-09 | 64 |
integument | 5.67e-09 | 46 |
integumental system | 5.67e-09 | 46 |
mesenchyme | 5.71e-09 | 160 |
entire embryonic mesenchyme | 5.71e-09 | 160 |
trunk mesenchyme | 9.08e-09 | 122 |
trunk | 9.82e-09 | 199 |
skin of body | 5.70e-08 | 41 |
artery | 7.07e-08 | 42 |
arterial blood vessel | 7.07e-08 | 42 |
arterial system | 7.07e-08 | 42 |