FFCP PHASE1:Hg19::chr2:45168959..45168990,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:45168959..45168990,+ to FFCP PHASE1:Hg19::chr2:45168959..45168990,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6496 | |EntrezGene=6496 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10889 | |HGNC=10889 | ||
|TSSclassifier=strong | |||
|UniProt=O95343 | |UniProt=O95343 | ||
|association_with_transcript=-46bp_to_NM_005413,uc002run.1_5end | |||
|cluster_id=chr2:45168959..45168990,+ | |||
|coexpression_cluster_id=C1905 | |||
|description=CAGE_peak_6_at_SIX3_5end | |||
|id=chr2:45168959..45168990,+ | |||
|ontology_enrichment_celltype=CL:0000306!8.24e-08!4;CL:0002222!8.24e-08!4;CL:0002224!8.24e-08!4;CL:0000075!1.25e-07!27;CL:0002322!1.27e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000306;1.09e-15;4!CL:0002222;1.09e-15;4!CL:0002224;1.09e-15;4!CL:0002586;1.25e-12;3!CL:0000064;2.57e-12;3!CL:0000067;2.57e-12;3!CL:0005012;2.57e-12;3!CL:0002304;2.57e-12;3!CL:0000075;8.64e-10;27!CL:0000149;1.40e-09;4!CL:0000333;1.91e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,1.23e-15,4;CL:0002222,1.23e-15,4;CL:0002224,1.23e-15,4;CL:0002586,1.13e-12,3;CL:0000064,2.29e-12,3;CL:0000067,2.29e-12,3;CL:0005012,2.29e-12,3;CL:0002304,2.29e-12,3;CL:0000075,9.15e-10,27;CL:0000149,1.31e-09,4 | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.29e-12;3!UBERON:0010122;1.83e-09;2 | |||
|ontology_enrichment_disease=DOID:171!5.48e-10!10;DOID:169!3.10e-07!6 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.40e-23!90;UBERON:0003056!3.98e-23!61;UBERON:0003075!4.37e-21!86;UBERON:0007284!4.37e-21!86;UBERON:0007625!8.09e-19!11;UBERON:0002104!1.15e-18!21;UBERON:0000970!2.54e-17!20;UBERON:0000019!5.89e-16!19;UBERON:0000047!5.89e-16!19;UBERON:0004088!5.89e-16!19;UBERON:0003072!5.89e-16!19;UBERON:0003071!5.89e-16!19;UBERON:0004128!5.89e-16!19;UBERON:0001032!1.08e-15!24;UBERON:0004456!1.08e-15!24;UBERON:0000073!8.50e-15!94;UBERON:0001016!8.50e-15!94;UBERON:0000020!1.90e-14!23;UBERON:0000924!1.97e-14!173;UBERON:0006601!1.97e-14!173;UBERON:0001456!5.02e-14!21;UBERON:0004121!9.98e-13!169;UBERON:0000033!3.41e-12!123;UBERON:0000153!4.24e-11!129;UBERON:0007811!4.24e-11!129;UBERON:0005743!5.19e-11!86;UBERON:0002780!7.05e-11!41;UBERON:0001890!7.05e-11!41;UBERON:0006240!7.05e-11!41;UBERON:0003080!1.71e-10!42;UBERON:0000966!8.46e-10!5;UBERON:0005388!8.46e-10!5;UBERON:0001802!8.46e-10!5;UBERON:0009663!1.53e-09!7;UBERON:0002420!2.29e-09!9;UBERON:0007245!2.29e-09!9;UBERON:0010009!2.29e-09!9;UBERON:0010011!2.29e-09!9;UBERON:0000454!2.29e-09!9;UBERON:0002616!3.97e-09!59;UBERON:0005085!5.01e-09!29;UBERON:0001894!6.19e-09!7;UBERON:0006222!6.19e-09!7;UBERON:0001801!6.70e-09!14;UBERON:0001049!8.62e-09!57;UBERON:0005068!8.62e-09!57;UBERON:0006241!8.62e-09!57;UBERON:0007135!8.62e-09!57;UBERON:0000369!2.16e-08!4;UBERON:0002435!2.16e-08!4;UBERON:0000204!2.16e-08!4;UBERON:0010082!2.16e-08!4;UBERON:0000955!2.39e-08!69;UBERON:0006238!2.39e-08!69;UBERON:0001017!3.92e-08!82;UBERON:0000488!7.83e-08!4;UBERON:0010077!8.24e-08!4;UBERON:0005389!8.24e-08!4;UBERON:0000484!8.24e-08!4;UBERON:0002546!8.24e-08!4;UBERON:0000965!8.24e-08!4;UBERON:0001803!8.24e-08!4;UBERON:0003073!8.24e-08!4;UBERON:0005426!8.24e-08!4;UBERON:0002308!3.63e-07!9;UBERON:0000125!3.63e-07!9;UBERON:0005383!8.06e-07!3;UBERON:0005382!8.06e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;1.53e-40;11!UBERON:0002104;7.03e-38;21!UBERON:0000970;7.03e-35;20!UBERON:0001032;1.09e-32;24!UBERON:0004456;1.09e-32;24!UBERON:0000019;6.55e-32;19!UBERON:0000047;6.55e-32;19!UBERON:0004088;6.55e-32;19!UBERON:0010230;6.55e-32;19!UBERON:0000020;6.79e-30;23!UBERON:0001456;1.39e-28;21!UBERON:0000966;4.53e-20;5!UBERON:0005388;4.53e-20;5!UBERON:0001802;4.53e-20;5!UBERON:0000369;5.25e-17;4!UBERON:0002435;5.25e-17;4!UBERON:0000204;5.25e-17;4!UBERON:0001801;2.31e-16;14!UBERON:0010077;1.09e-15;4!UBERON:0005389;1.09e-15;4!UBERON:0000488;1.09e-15;4!UBERON:0000484;1.09e-15;4!UBERON:0000965;1.09e-15;4!UBERON:0001803;1.09e-15;4!UBERON:0009663;8.09e-15;7!UBERON:0001894;7.46e-14;7!UBERON:0005383;2.08e-13;3!UBERON:0005382;2.08e-13;3!UBERON:0001781;1.25e-12;3!UBERON:0001782;1.25e-12;3!UBERON:0010371;1.97e-12;31!UBERON:0001778;2.57e-12;3!UBERON:0001775;2.57e-12;3!UBERON:0002420;1.92e-11;9!UBERON:0000125;1.92e-11;9!UBERON:0007245;1.92e-11;9!UBERON:0002308;1.92e-11;9!UBERON:0010009;1.92e-11;9!UBERON:0010011;1.92e-11;9!UBERON:0000454;1.92e-11;9!UBERON:0002203;1.73e-10;6!UBERON:0001768;1.73e-10;6!UBERON:0002200;1.73e-10;6!UBERON:0002780;1.80e-09;41!UBERON:0001890;1.80e-09;41!UBERON:0001873;1.83e-09;2!UBERON:0000007;4.10e-09;2!UBERON:0001897;2.18e-08;2!UBERON:0010225;2.18e-08;2!UBERON:0001444;3.39e-08;48!UBERON:0003714;4.21e-08;2!UBERON:0000013;1.91e-07;5!UBERON:0002410;1.91e-07;5!UBERON:0000033;5.46e-07;50!UBERON:0000073;5.82e-07;53!UBERON:0002616;5.82e-07;53!UBERON:0000010;7.58e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,1.56e-40,11;UBERON:0003056,3.82e-39,61;UBERON:0000970,5.76e-38,21;UBERON:0002104,5.76e-38,21;UBERON:0000019,6.96e-35,20;UBERON:0000047,6.96e-35,20;UBERON:0010312,6.96e-35,20;UBERON:0004088,6.96e-35,20;UBERON:0010230,6.96e-35,20;UBERON:0003072,6.96e-35,20;UBERON:0004128,6.96e-35,20;UBERON:0003071,6.96e-35,20;UBERON:0000020,9.14e-33,24;UBERON:0001032,9.14e-33,24;UBERON:0004456,9.14e-33,24;UBERON:0001456,2.08e-31,22;UBERON:0002346,4.26e-28,86;UBERON:0003075,1.65e-27,82;UBERON:0007284,1.65e-27,82;UBERON:0000966,2.64e-23,6;UBERON:0005388,2.64e-23,6;UBERON:0001802,2.64e-23,6;UBERON:0005085,2.51e-21,31;UBERON:0010371,2.49e-20,104;UBERON:0000369,6.05e-17,4;UBERON:0002435,6.05e-17,4;UBERON:0000204,6.05e-17,4;UBERON:0010082,6.05e-17,4;UBERON:0001801,2.47e-16,14;UBERON:0010314,4.66e-16,132;UBERON:0001781,7.17e-16,4;UBERON:0000488,1.09e-15,4;UBERON:0010077,1.23e-15,4;UBERON:0005389,1.23e-15,4;UBERON:0000484,1.23e-15,4;UBERON:0002546,1.23e-15,4;UBERON:0000965,1.23e-15,4;UBERON:0001803,1.23e-15,4;UBERON:0003073,1.23e-15,4;UBERON:0005426,1.23e-15,4;UBERON:0009663,8.94e-15,7;UBERON:0004121,6.82e-14,171;UBERON:0000924,6.82e-14,171;UBERON:0006601,6.82e-14,171;UBERON:0001894,8.55e-14,7;UBERON:0006222,8.55e-14,7;UBERON:0005383,2.04e-13,3;UBERON:0005382,2.04e-13,3;UBERON:0002780,7.39e-13,41;UBERON:0001890,7.39e-13,41;UBERON:0003080,7.39e-13,41;UBERON:0006240,7.39e-13,41;UBERON:0001782,1.13e-12,3;UBERON:0005424,1.13e-12,3;UBERON:0001778,2.29e-12,3;UBERON:0001775,2.29e-12,3;UBERON:0001444,2.63e-12,49;UBERON:0002420,2.07e-11,9;UBERON:0000125,2.07e-11,9;UBERON:0007245,2.07e-11,9;UBERON:0002308,2.07e-11,9;UBERON:0010009,2.07e-11,9;UBERON:0010011,2.07e-11,9;UBERON:0000454,2.07e-11,9;UBERON:0002203,1.73e-10,6;UBERON:0001768,1.73e-10,6;UBERON:0002200,1.73e-10,6;UBERON:0000033,2.23e-10,56;UBERON:0001873,1.80e-09,2;UBERON:0010122,1.80e-09,2;UBERON:0001016,2.28e-09,89;UBERON:0000073,2.29e-09,53;UBERON:0002616,2.29e-09,53;UBERON:0000007,3.87e-09,2;UBERON:0000153,4.46e-09,62;UBERON:0007811,4.46e-09,62;UBERON:0001049,9.97e-09,56;UBERON:0005068,9.97e-09,56;UBERON:0006241,9.97e-09,56;UBERON:0007135,9.97e-09,56;UBERON:0001897,2.69e-08,2;UBERON:0010225,2.69e-08,2;UBERON:0003714,3.37e-08,2;UBERON:0000076,7.49e-08,8;UBERON:0000955,7.80e-08,68;UBERON:0006238,7.80e-08,68;UBERON:0000013,1.81e-07,5;UBERON:0002410,1.81e-07,5;UBERON:0000010,7.17e-07,8 | |||
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| ||
|short_description=p6@SIX3 | |||
}} | }} |
Latest revision as of 09:36, 17 September 2015
Short description: | p6@SIX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SIX3_5end |
Coexpression cluster: | C1905_caudate_putamen_embryonic_pituitary_globus_cord_rhabdomyosarcoma |
Association with transcript: | -46bp_to_NM_005413, uc002run.1_5end |
EntrezGene: | SIX3 |
HGNC: | 10889 |
UniProt: | O95343 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 1.23e-15 | 4 |
vertebrate lens cell | 1.23e-15 | 4 |
lens epithelial cell | 1.23e-15 | 4 |
retinal pigment epithelial cell | 1.13e-12 | 3 |
ciliated cell | 2.29e-12 | 3 |
ciliated epithelial cell | 2.29e-12 | 3 |
multi-ciliated epithelial cell | 2.29e-12 | 3 |
non-pigmented ciliary epithelial cell | 2.29e-12 | 3 |
columnar/cuboidal epithelial cell | 9.15e-10 | 27 |
visual pigment cell | 1.31e-09 | 4 |