FFCP PHASE1:Hg19::chr19:3557570..3557590,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=126321 | |EntrezGene=126321 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28299 | |HGNC=28299 | ||
|TSSclassifier=strong | |||
|UniProt=Q6NUT3,E9PAJ8,A8MXP7 | |UniProt=Q6NUT3,E9PAJ8,A8MXP7 | ||
|association_with_transcript=0bp_to_ENST00000355415,ENST00000389395,ENST00000398558,NM_001042680,NM_021731,NM_174983,uc002lxw.2,uc002lxx.2,uc002lxz.2_5end | |association_with_transcript=0bp_to_ENST00000355415,ENST00000389395,ENST00000398558,NM_001042680,NM_021731,NM_174983,uc002lxw.2,uc002lxx.2,uc002lxz.2_5end | ||
|cluster_id=chr19:3557570..3557590,- | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_1_at_MFSD12_5end | |description=CAGE_peak_1_at_MFSD12_5end | ||
|id=chr19:3557570..3557590,- | |id=chr19:3557570..3557590,- | ||
|ontology_enrichment_celltype=CL:0002009!6.33e-26!65;CL:0002194!8.44e-25!63;CL:0000576!8.44e-25!63;CL:0000040!8.44e-25!63;CL:0000559!8.44e-25!63;CL:0000766!6.39e-21!76;CL:0000557!2.31e-20!71;CL:0000860!2.87e-20!45;CL:0002057!2.02e-18!42;CL:0000763!4.76e-17!112;CL:0000049!4.76e-17!112;CL:0000839!6.74e-17!70;CL:0000548!2.56e-11!679;CL:0000004!2.56e-11!679;CL:0000255!2.56e-11!679;CL:0002371!5.47e-11!591;CL:0000012!8.52e-11!682;CL:0000144!6.06e-10!625;CL:0000063!6.20e-10!578;CL:0000003!1.71e-09!722;CL:0000451!3.05e-08!10;CL:0000990!3.92e-07!8;CL:0000359!5.10e-07!32;CL:1000449!5.73e-07!16;CL:0000235!5.89e-07!10;CL:0000192!8.14e-07!42;CL:0000514!8.14e-07!42 | |ontology_enrichment_celltype=CL:0002009!6.33e-26!65;CL:0002194!8.44e-25!63;CL:0000576!8.44e-25!63;CL:0000040!8.44e-25!63;CL:0000559!8.44e-25!63;CL:0000766!6.39e-21!76;CL:0000557!2.31e-20!71;CL:0000860!2.87e-20!45;CL:0002057!2.02e-18!42;CL:0000763!4.76e-17!112;CL:0000049!4.76e-17!112;CL:0000839!6.74e-17!70;CL:0000548!2.56e-11!679;CL:0000004!2.56e-11!679;CL:0000255!2.56e-11!679;CL:0002371!5.47e-11!591;CL:0000012!8.52e-11!682;CL:0000144!6.06e-10!625;CL:0000063!6.20e-10!578;CL:0000003!1.71e-09!722;CL:0000451!3.05e-08!10;CL:0000990!3.92e-07!8;CL:0000359!5.10e-07!32;CL:1000449!5.73e-07!16;CL:0000235!5.89e-07!10;CL:0000192!8.14e-07!42;CL:0000514!8.14e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0000473;2.07e-14;39!CL:0000234;2.07e-14;39!CL:0000860;1.81e-13;33!CL:0002057;1.81e-13;33!CL:0000576;4.97e-12;48!CL:0000766;2.64e-08;69!CL:0000451;2.97e-08;10!CL:0000990;3.83e-07;8!CL:1000449;4.84e-07;15!CL:0000359;7.99e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,4.40e-24,61;CL:0002194,5.72e-23,59;CL:0000576,5.72e-23,59;CL:0000040,5.72e-23,59;CL:0000559,5.72e-23,59;CL:0000473,3.73e-22,48;CL:0000234,3.73e-22,48;CL:0000766,3.52e-19,72;CL:0000557,1.28e-18,67;CL:0000860,2.02e-18,42;CL:0002057,2.02e-18,42;CL:0000763,1.59e-15,108;CL:0000049,1.59e-15,108;CL:0000839,3.07e-15,66;CL:0000451,3.05e-08,10;CL:0000990,3.92e-07,8;CL:1000449,4.95e-07,15;CL:0000359,5.10e-07,32;CL:0000192,7.24e-07,43;CL:0000514,7.24e-07,43 | |||
|ontology_enrichment_development_v019=CL:0002057;1.42e-13;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.29e-19!80;UBERON:0001474!1.94e-17!86;UBERON:0003081!8.27e-17!216;UBERON:0002390!2.05e-14!102;UBERON:0003061!2.05e-14!102;UBERON:0004765!3.43e-14!101;UBERON:0001434!3.43e-14!101;UBERON:0002193!1.35e-13!112;UBERON:0002405!4.82e-13!115;UBERON:0002204!9.28e-13!167;UBERON:0000926!6.06e-11!448;UBERON:0004120!6.06e-11!448;UBERON:0006603!6.06e-11!448;UBERON:0004211!5.73e-07!16;UBERON:0001285!5.73e-07!16;UBERON:0007684!5.73e-07!16;UBERON:0003220!5.73e-07!16;UBERON:0004208!5.73e-07!16;UBERON:0001737!8.82e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;3.04e-07;24!UBERON:0011143;3.04e-07;24!UBERON:0006555;4.84e-07;15!UBERON:0004819;4.84e-07;15!UBERON:0001285;4.84e-07;15!UBERON:0007684;4.84e-07;15!UBERON:0006554;5.32e-07;30!UBERON:0001008;5.32e-07;30!UBERON:0001737;8.82e-07;9!UBERON:0001557;8.82e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.60e-17,76;UBERON:0001474,8.00e-16,82;UBERON:0002405,1.54e-15,93;UBERON:0004765,2.02e-14,90;UBERON:0002390,5.81e-13,98;UBERON:0003061,5.81e-13,98;UBERON:0003081,6.19e-13,203;UBERON:0001434,1.60e-12,100;UBERON:0002193,3.30e-12,108;UBERON:0002204,1.59e-11,167;UBERON:0000926,3.36e-10,315;UBERON:0004120,3.36e-10,315;UBERON:0006603,3.36e-10,315;UBERON:0004211,4.95e-07,15;UBERON:0009773,4.95e-07,15;UBERON:0001231,4.95e-07,15;UBERON:0001285,4.95e-07,15;UBERON:0007684,4.95e-07,15;UBERON:0004208,4.95e-07,15;UBERON:0001737,8.82e-07,9 | |||
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|short_description=p1@MFSD12 | |short_description=p1@MFSD12 | ||
}} | }} |
Latest revision as of 09:40, 17 September 2015
Short description: | p1@MFSD12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MFSD12_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | 0bp_to_ENST00000355415, ENST00000389395, ENST00000398558, NM_001042680, NM_021731, NM_174983, uc002lxw.2, uc002lxx.2, uc002lxz.2_5end |
EntrezGene: | MFSD12 |
HGNC: | 28299 |
UniProt: | Q6NUT3E9PAJ8A8MXP7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 4.40e-24 | 61 |
monopoietic cell | 5.72e-23 | 59 |
monocyte | 5.72e-23 | 59 |
monoblast | 5.72e-23 | 59 |
promonocyte | 5.72e-23 | 59 |
defensive cell | 3.73e-22 | 48 |
phagocyte | 3.73e-22 | 48 |
myeloid leukocyte | 3.52e-19 | 72 |
granulocyte monocyte progenitor cell | 1.28e-18 | 67 |
classical monocyte | 2.02e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.02e-18 | 42 |
myeloid cell | 1.59e-15 | 108 |
common myeloid progenitor | 1.59e-15 | 108 |
myeloid lineage restricted progenitor cell | 3.07e-15 | 66 |
dendritic cell | 3.05e-08 | 10 |
conventional dendritic cell | 3.92e-07 | 8 |
epithelial cell of nephron | 4.95e-07 | 15 |
vascular associated smooth muscle cell | 5.10e-07 | 32 |
smooth muscle cell | 7.24e-07 | 43 |
smooth muscle myoblast | 7.24e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.60e-17 | 76 |
bone element | 8.00e-16 | 82 |
immune system | 1.54e-15 | 93 |
skeletal element | 2.02e-14 | 90 |
hematopoietic system | 5.81e-13 | 98 |
blood island | 5.81e-13 | 98 |
lateral plate mesoderm | 6.19e-13 | 203 |
skeletal system | 1.60e-12 | 100 |
hemolymphoid system | 3.30e-12 | 108 |
musculoskeletal system | 1.59e-11 | 167 |
mesoderm | 3.36e-10 | 315 |
mesoderm-derived structure | 3.36e-10 | 315 |
presumptive mesoderm | 3.36e-10 | 315 |
nephron epithelium | 4.95e-07 | 15 |
renal tubule | 4.95e-07 | 15 |
nephron tubule | 4.95e-07 | 15 |
nephron | 4.95e-07 | 15 |
uriniferous tubule | 4.95e-07 | 15 |
nephrogenic mesenchyme | 4.95e-07 | 15 |
larynx | 8.82e-07 | 9 |