FFCP PHASE1:Hg19::chr11:27062483..27062497,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8424 | |EntrezGene=8424 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=964 | |HGNC=964 | ||
|TSSclassifier=strong | |||
|UniProt=O75936 | |UniProt=O75936 | ||
|association_with_transcript=-11bp_to_ENST00000263182,NM_003986,uc001mre.1_5end | |association_with_transcript=-11bp_to_ENST00000263182,NM_003986,uc001mre.1_5end | ||
|cluster_id=chr11:27062483..27062497,+ | |||
|coexpression_cluster_id=C2123 | |||
|description=CAGE_peak_10_at_BBOX1_5end | |description=CAGE_peak_10_at_BBOX1_5end | ||
|id=chr11:27062483..27062497,+ | |id=chr11:27062483..27062497,+ | ||
|ontology_enrichment_celltype=CL:0001014!9.34e-07!2;CL:0001016!9.34e-07!2 | |ontology_enrichment_celltype=CL:0001014!9.34e-07!2;CL:0001016!9.34e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000785;3.56e-19;1!CL:0000819;3.56e-19;1!CL:0001014;2.85e-10;2!CL:0001016;2.85e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000819,5.62e-19,1;CL:0001014,2.49e-10,2;CL:0001016,2.49e-10,2;CL:0000785,3.58e-10,2;CL:0000955,3.58e-10,2;CL:0000818,3.58e-10,2;CL:0000954,3.58e-10,2;CL:0000816,3.58e-10,2;CL:0000817,3.35e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0009143;3.56e-19;1!UBERON:0007123;1.30e-15;5!CL:0000954;2.85e-10;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060073;3.56e-19;1!DOID:8675;3.56e-19;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,5.62e-19,1;DOID:8675,5.62e-19,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!7.46e-20!115;UBERON:0000153!6.01e-15!129;UBERON:0007811!6.01e-15!129;UBERON:0001049!2.85e-13!57;UBERON:0005068!2.85e-13!57;UBERON:0006241!2.85e-13!57;UBERON:0007135!2.85e-13!57;UBERON:0000033!1.48e-12!123;UBERON:0004121!5.35e-11!169;UBERON:0000924!1.50e-10!173;UBERON:0006601!1.50e-10!173;UBERON:0005743!5.33e-10!86;UBERON:0002616!6.45e-10!59;UBERON:0000955!8.02e-10!69;UBERON:0006238!8.02e-10!69;UBERON:0001017!1.34e-09!82;UBERON:0006947!2.29e-09!3;UBERON:0004054!2.29e-09!3;UBERON:0003075!2.95e-09!86;UBERON:0007284!2.95e-09!86;UBERON:0000475!1.18e-08!365;UBERON:0002346!1.27e-08!90;UBERON:0000073!1.44e-08!94;UBERON:0001016!1.44e-08!94;UBERON:0002020!2.69e-08!34;UBERON:0003528!2.69e-08!34;UBERON:0000988!4.45e-08!3;UBERON:0002780!4.61e-08!41;UBERON:0001890!4.61e-08!41;UBERON:0006240!4.61e-08!41;UBERON:0003080!8.27e-08!42;UBERON:0000062!8.85e-08!511;UBERON:0002298!1.01e-07!8;UBERON:0003076!1.71e-07!15;UBERON:0003057!1.71e-07!15;UBERON:0000007!2.11e-07!2;UBERON:0002308!2.44e-07!9;UBERON:0000125!2.44e-07!9;UBERON:0000341!3.39e-07!2;UBERON:0005904!4.17e-07!4;UBERON:0003127!8.83e-07!2 | |ontology_enrichment_uberon=UBERON:0007023!7.46e-20!115;UBERON:0000153!6.01e-15!129;UBERON:0007811!6.01e-15!129;UBERON:0001049!2.85e-13!57;UBERON:0005068!2.85e-13!57;UBERON:0006241!2.85e-13!57;UBERON:0007135!2.85e-13!57;UBERON:0000033!1.48e-12!123;UBERON:0004121!5.35e-11!169;UBERON:0000924!1.50e-10!173;UBERON:0006601!1.50e-10!173;UBERON:0005743!5.33e-10!86;UBERON:0002616!6.45e-10!59;UBERON:0000955!8.02e-10!69;UBERON:0006238!8.02e-10!69;UBERON:0001017!1.34e-09!82;UBERON:0006947!2.29e-09!3;UBERON:0004054!2.29e-09!3;UBERON:0003075!2.95e-09!86;UBERON:0007284!2.95e-09!86;UBERON:0000475!1.18e-08!365;UBERON:0002346!1.27e-08!90;UBERON:0000073!1.44e-08!94;UBERON:0001016!1.44e-08!94;UBERON:0002020!2.69e-08!34;UBERON:0003528!2.69e-08!34;UBERON:0000988!4.45e-08!3;UBERON:0002780!4.61e-08!41;UBERON:0001890!4.61e-08!41;UBERON:0006240!4.61e-08!41;UBERON:0003080!8.27e-08!42;UBERON:0000062!8.85e-08!511;UBERON:0002298!1.01e-07!8;UBERON:0003076!1.71e-07!15;UBERON:0003057!1.71e-07!15;UBERON:0000007!2.11e-07!2;UBERON:0002308!2.44e-07!9;UBERON:0000125!2.44e-07!9;UBERON:0000341!3.39e-07!2;UBERON:0005904!4.17e-07!4;UBERON:0003127!8.83e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0000007;1.72e-37;2!UBERON:0003296;2.59e-19;4!UBERON:0010133;2.59e-19;4!UBERON:0002046;1.30e-15;5!UBERON:0001894;1.82e-11;7!UBERON:0000341;1.97e-10;2!UBERON:0002368;4.19e-08;33!UBERON:0001043;2.88e-07;3!UBERON:0001723;2.88e-07;3!UBERON:0001033;2.88e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000007,1.89e-37,2;UBERON:0003296,2.71e-19,4;UBERON:0010133,2.71e-19,4;UBERON:0002046,1.21e-15,5;UBERON:0004117,1.21e-15,5;UBERON:0007689,1.21e-15,5;UBERON:0007123,1.21e-15,5;UBERON:0003091,1.21e-15,5;UBERON:0001894,1.87e-11,7;UBERON:0006222,1.87e-11,7;UBERON:0000341,2.07e-10,2;UBERON:0008814,9.82e-10,18;UBERON:0002368,1.02e-08,35;UBERON:0009722,1.28e-07,11;UBERON:0007690,1.28e-07,11;UBERON:0001043,2.47e-07,3;UBERON:0009143,2.47e-07,3;UBERON:0001723,2.79e-07,3;UBERON:0001033,2.79e-07,3;UBERON:0010056,2.79e-07,3;UBERON:0000949,7.76e-07,45 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0.412164046590889,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28055318027145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0.762760950878299,0.236387681767936,0,0,0,0,0.482385754501632,0,0,0,0,0,0.278847488557207,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27718352450966,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0.52418000472609,0,0,0,0,1.93978032976839,0,0.451961481561065,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0.104602846312333,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0.2249738915515,1.5476039091159,0,0.670869375198532,1.33969702408637,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0.478901577171454,0,0.252071696221718,0,0,0,0.0981477185010256,0.11796972334774,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0.126831620387814,0,0,0,0,0.255524855279191,0,0,6.06965604236632,5.23623040107984,0.0887023701626388,0,0,0.0679697329768317,0.0657727735628491,0,0,0.156986185701028,0.314231179832004,0,0,0,0,0,0,0,0,0,0,0.85359238546975,0.691259661814092,0,0,0,0.423387050190929,0.9164274741762,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0.852935927603924,2.14257988317366,0,0.124149428591716,0,6.55565730265099,2.82964064541507,0.870866991587845,1.36893320434112,0.26940821205835,0.645499848534087,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0.412164046590889,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28055318027145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0.762760950878299,0.236387681767936,0,0,0,0,0.482385754501632,0,0,0,0,0,0.278847488557207,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27718352450966,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0.52418000472609,0,0,0,0,1.93978032976839,0,0.451961481561065,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0.104602846312333,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0.2249738915515,1.5476039091159,0,0.670869375198532,1.33969702408637,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0.478901577171454,0,0.252071696221718,0,0,0,0.0981477185010256,0.11796972334774,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0.126831620387814,0,0,0,0,0.255524855279191,0,0,6.06965604236632,5.23623040107984,0.0887023701626388,0,0,0.0679697329768317,0.0657727735628491,0,0,0.156986185701028,0.314231179832004,0,0,0,0,0,0,0,0,0,0,0.85359238546975,0.691259661814092,0,0,0,0.423387050190929,0.9164274741762,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0.852935927603924,2.14257988317366,0,0.124149428591716,0,6.55565730265099,2.82964064541507,0.870866991587845,1.36893320434112,0.26940821205835,0.645499848534087,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p10@BBOX1 | |short_description=p10@BBOX1 | ||
}} | }} |
Latest revision as of 11:45, 17 September 2015
Short description: | p10@BBOX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_BBOX1_5end |
Coexpression cluster: | C2123_pituitary_thyroid_esophagus_kidney_tongue_salivary_throat |
Association with transcript: | -11bp_to_ENST00000263182, NM_003986, uc001mre.1_5end |
EntrezGene: | BBOX1 |
HGNC: | 964 |
UniProt: | O75936 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B-1 B cell | 5.62e-19 | 1 |
CD1a-positive Langerhans cell | 2.49e-10 | 2 |
immature CD1a-positive Langerhans cell | 2.49e-10 | 2 |
mature B cell | 3.58e-10 | 2 |
pre-B-II cell | 3.58e-10 | 2 |
transitional stage B cell | 3.58e-10 | 2 |
small pre-B-II cell | 3.58e-10 | 2 |
immature B cell | 3.58e-10 | 2 |
precursor B cell | 3.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
pituitary gland | 1.89e-37 | 2 |
gland of diencephalon | 2.71e-19 | 4 |
neuroendocrine gland | 2.71e-19 | 4 |
thyroid gland | 1.21e-15 | 5 |
pharyngeal pouch | 1.21e-15 | 5 |
thyroid diverticulum | 1.21e-15 | 5 |
pharyngeal pouch 2 | 1.21e-15 | 5 |
thyroid primordium | 1.21e-15 | 5 |
diencephalon | 1.87e-11 | 7 |
future diencephalon | 1.87e-11 | 7 |
throat | 2.07e-10 | 2 |
pharyngeal arch system | 9.82e-10 | 18 |
endocrine gland | 1.02e-08 | 35 |
entire pharyngeal arch endoderm | 1.28e-07 | 11 |
early pharyngeal endoderm | 1.28e-07 | 11 |
esophagus | 2.47e-07 | 3 |
esophageal region | 2.47e-07 | 3 |
tongue | 2.79e-07 | 3 |
gustatory system | 2.79e-07 | 3 |
future tongue | 2.79e-07 | 3 |
endocrine system | 7.76e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 5.62e-19 | 1 |
lymphosarcoma | 5.62e-19 | 1 |