FFCP PHASE1:Hg19::chr7:18548958..18549006,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:18548958..18549006,+ to FFCP PHASE1:Hg19::chr7:18548958..18549006,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9734 | |EntrezGene=9734 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14065 | |HGNC=14065 | ||
|TSSclassifier=strong | |||
|UniProt=E7EX34 | |UniProt=E7EX34 | ||
|association_with_transcript=22bp_to_ENST00000524023,uc011jye.1,uc011jyf.1_5end | |||
|cluster_id=chr7:18548958..18549006,+ | |||
|coexpression_cluster_id=C2888 | |||
|description=CAGE_peak_2_at_HDAC9_5end | |||
|id=chr7:18548958..18549006,+ | |||
|ontology_enrichment_celltype=CL:0002321!3.48e-18!248;CL:0000220!3.67e-18!246;CL:0000066!1.72e-15!254;CL:0000012!1.36e-12!682;CL:0000548!1.54e-12!679;CL:0000004!1.54e-12!679;CL:0000255!1.54e-12!679;CL:0000055!6.06e-11!180;CL:0000222!1.33e-09!119;CL:0000359!4.04e-09!32;CL:0000076!2.27e-08!62;CL:0000003!7.26e-08!722;CL:0000144!1.26e-07!625;CL:0000192!4.65e-07!42;CL:0000514!4.65e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.43e-09;32!CL:0002539;7.37e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,7.88e-19,250;CL:0000066,8.38e-18,253;CL:0000359,1.06e-09,32;CL:0000222,2.46e-09,121;CL:0000076,4.94e-09,63;CL:0002539,7.65e-07,10;CL:0000192,9.54e-07,43;CL:0000514,9.54e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!3.24e-07!14;DOID:2394!6.50e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.25e-08;14!DOID:2394;5.70e-08;14!DOID:193;1.08e-07;29!DOID:120;2.28e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.26e-08,14;DOID:2394,5.63e-08,14;DOID:193,1.15e-07,29;DOID:120,2.37e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0002049!9.08e-13!79;UBERON:0007798!9.08e-13!79;UBERON:0000055!2.61e-12!69;UBERON:0001637!4.00e-10!42;UBERON:0003509!4.00e-10!42;UBERON:0004572!4.00e-10!42;UBERON:0001981!1.09e-09!60;UBERON:0007500!1.09e-09!60;UBERON:0004537!1.09e-09!60;UBERON:0006965!1.09e-09!60;UBERON:0003914!3.81e-09!118;UBERON:0004535!4.11e-09!110;UBERON:0001009!1.35e-08!113;UBERON:0004573!1.58e-08!33;UBERON:0004571!1.58e-08!33;UBERON:0004872!4.36e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.54e-09;33!UBERON:0004571;5.54e-09;33!UBERON:0001637;8.00e-08;42!UBERON:0003509;8.00e-08;42!UBERON:0004572;8.00e-08;42!UBERON:0010371;4.11e-07;31!UBERON:0002049;4.95e-07;75!UBERON:0007798;4.95e-07;75!UBERON:0004237;7.37e-07;10!UBERON:0004695;7.37e-07;10!UBERON:0002111;7.37e-07;10!UBERON:0004178;7.37e-07;10!UBERON:0000947;8.76e-07;21!UBERON:0010191;8.76e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,1.82e-12,78;UBERON:0007798,1.82e-12,78;UBERON:0000055,2.43e-11,68;UBERON:0001637,9.20e-11,42;UBERON:0003509,9.20e-11,42;UBERON:0004572,9.20e-11,42;UBERON:0004573,9.19e-10,33;UBERON:0004571,9.19e-10,33;UBERON:0007500,5.35e-09,59;UBERON:0001981,5.35e-09,59;UBERON:0004537,5.35e-09,59;UBERON:0006965,5.35e-09,59;UBERON:0003914,7.97e-09,117;UBERON:0004535,2.70e-07,109;UBERON:0000947,6.76e-07,21;UBERON:0010191,6.76e-07,21;UBERON:0004237,7.65e-07,10;UBERON:0004695,7.65e-07,10;UBERON:0002111,7.65e-07,10;UBERON:0004178,7.65e-07,10 | |||
|phase1_expression=2.54349730978779,1.07050261945492,1.9733616573436,0,0,1.74467704820074,0,0.631719873426831,0,0.245733936501509,1.39560233594486,0,0.263766978228454,0,0,44.3734596658172,34.3535880973667,28.4820935251076,22.9328415431538,1.72369481307503,1.02000345622126,0,0.572471974262113,3.55873505189499,1.75759695432724,0.305653622991805,0.0821005894499457,0.157421562627358,0,0,0,4.59710612239464,1.204823675113,2.21852406100073,0,0,0,2.76997704265939,1.20326668482085,0.651032612147555,0,0,0.257575567634187,0,0,0,1.16214518452842,0.822335776043652,3.09706370895104,4.60307827715441,3.07392847834921,11.3511470346521,5.17118521104928,12.2642089880927,14.8969135253776,0.188242339542605,0,0.449446968890169,5.50951006267625,5.45579346029359,6.39337125799041,0.329851300186716,0.199463657621632,0.852449501065388,9.86711411337186,18.7237124148076,44.8432019276814,0,2.60741459210101,2.6062661364614,7.26479403160043,19.1504370713534,52.8492187026277,0,0,0,0.22465726229299,0,0,0,0,0,0,1.09227722252426,0,0.426730222566507,0.400395987036012,0,0.661044872784862,0,1.1384259382189,0,1.14681968437569,0,5.04457706683382,0.263384084775077,0,0,0,0,0,0.473447805734733,0,0.111410456885174,0.589211814949674,0.443067789167242,0.541607727530031,0.384273959177026,0.520237390239513,0,0,0,0.14828656316206,0,0,0,0,0.34362744548263,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0.722878304769133,0,0,0.795285947051099,0.486634870302636,28.5495147835485,9.09090529596512,7.72946114099509,0.130979075497713,0.364295288292542,0,0,0,1.32957960518865,0,0.571994910780128,0,3.7764857399674,0,0.347140501607594,0.56530794192401,5.45349267072878,0.550236083880135,3.9709043641994,20.414923974377,29.8843660656837,32.1331788254083,17.7244899528025,9.12326526862215,6.34561349625241,5.51494620518803,1.62028389576352,1.42879565254528,0.44905874525234,1.80178368773316,0,0,0,0,0,0,5.4666914686485,11.2701155381476,147.371418245113,4.30254931123221,1.77334191099179,0.560677600142307,1.06748995729705,2.22000793575444,1.8672662123986,2.69421344139376,1.9615428373615,1.51357427644931,0,0,1.5608003841516,5.70471821544449,2.69007624993242,0.469737994575059,1.45685649931318,1.26405726032024,0,0.737005903870608,0,0,0.989067717114227,0.910161361938026,1.43723628363248,0,0,0.277064115484183,0.438977620880838,4.29082914118628,1.80285670687916,2.1552114800404,23.8588215466186,2.13557388818567,1.69545520927649,2.40072876867522,1.23663035086127,15.973713482829,4.46680455195816,15.0210935694727,8.47701944902428,6.56327813034698,1.38074847963449,0,20.5905563659636,8.56392834934942,2.88253006927829,48.7017349971508,34.0932650738543,51.0512179792427,1.46368447355514,0.265059536642971,0.813357600086629,3.52447587052259,3.28017106138317,0.36497735907583,4.69348596989448,0.643240938192885,0,0.464367928031979,0.721879481669586,0.118306800039844,0.505754070234305,0.482022059766964,0.441175890929576,0,0,0,0,0.38474715694639,1.4763109092493,1.40241773803446,0,0,0,0,0,0,2.21379189377604,5.31860211925429,19.3160502319181,10.1161577931858,7.23808601363742,1.20364978706088,0,0,4.3299402607582,13.9116485970092,1.17408694235822,35.0810468059409,23.1492756288305,24.3525314860286,0,0,0.738651018262192,8.42415354501256,1.63494278517601,25.3081351764298,42.6674605625103,27.504368865023,7.52291590703926,7.55648240136301,2.30029607499127,0,0,0,0,0,0.63497894292169,18.7174328523556,1.17217447210047,1.71072446022705,4.52440967894623,2.40274446275134,2.00078502841405,0.784917590417525,0,0.7333828582095,25.3372562885244,0,0,10.1056484302251,5.2003718455683,0,0,0,0.285955987316295,0,0,0.65147236858747,0,0,26.8281045583032,15.6876022548053,8.19778527692868,0,0,2.10833939483032,23.0039861271919,0,0,5.21212704003285,0,5.19276793395697,0,0.197030760201927,0,0,2.03275699377971,2.60279707715243,1.54657762555539,1.34013012267479,0,0,0,0,0,0,0.813795071099207,0.623912584592421,1.60586089917446,1.41932173530541,0.234282829985426,3.00946099727719,0,0,0.664225598535437,0.921845842708516,5.99496939829772,0,0.343143423810856,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,8.68377327365719,8.13348458426731,4.49056151092918,5.25370511948374,6.14048698880044,1.93024705372329,1.48418066444991,0.308419387605311,0.177561725313127,0.0821271560138091,3.11552657510173,0.348631135379878,2.29632954224082,25.8653346691237,3.59115856849996,0.114814448164607,0.728364672026868,0.262248829918848,6.76799419361118,12.7075306222284,6.27479815341484,2.92278449306521,9.07744008478731,0,1.70093705276516,1.94324324491925,3.08454505380579,1.35473218771926,2.00675909541941,4.07802036872061,1.66215201785745,3.35812132083267,0.219259876645935,0,6.66770325302612,5.24823433119529,18.5465684958653,0.103041011647722,1.00726411300178,2.80532299729999,3.44559322797703,5.20048196829217,0,0.096670718292122,0.770243085573222,0.307007349452259,1.65403886981437,0.107420244868274,0.145016693914229,1.87498580315422,1.15741646340759,8.09896085268793,5.95789208831829,10.4642424245559,2.023155617111,2.32422774648643,20.46280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|phase1_expression=2.54349730978779,1.07050261945492,1.9733616573436,0,0,1.74467704820074,0,0.631719873426831,0,0.245733936501509,1.39560233594486,0,0.263766978228454,0,0,44.3734596658172,34.3535880973667,28.4820935251076,22.9328415431538,1.72369481307503,1.02000345622126,0,0.572471974262113,3.55873505189499,1.75759695432724,0.305653622991805,0.0821005894499457,0.157421562627358,0,0,0,4.59710612239464,1.204823675113,2.21852406100073,0,0,0,2.76997704265939,1.20326668482085,0.651032612147555,0,0,0.257575567634187,0,0,0,1.16214518452842,0.822335776043652,3.09706370895104,4.60307827715441,3.07392847834921,11.3511470346521,5.17118521104928,12.2642089880927,14.8969135253776,0.188242339542605,0,0.449446968890169,5.50951006267625,5.45579346029359,6.39337125799041,0.329851300186716,0.199463657621632,0.852449501065388,9.86711411337186,18.7237124148076,44.8432019276814,0,2.60741459210101,2.6062661364614,7.26479403160043,19.1504370713534,52.8492187026277,0,0,0,0.22465726229299,0,0,0,0,0,0,1.09227722252426,0,0.426730222566507,0.400395987036012,0,0.661044872784862,0,1.1384259382189,0,1.14681968437569,0,5.04457706683382,0.263384084775077,0,0,0,0,0,0.473447805734733,0,0.111410456885174,0.589211814949674,0.443067789167242,0.541607727530031,0.384273959177026,0.520237390239513,0,0,0,0.14828656316206,0,0,0,0,0.34362744548263,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0.722878304769133,0,0,0.795285947051099,0.486634870302636,28.5495147835485,9.09090529596512,7.72946114099509,0.130979075497713,0.364295288292542,0,0,0,1.32957960518865,0,0.571994910780128,0,3.7764857399674,0,0.347140501607594,0.56530794192401,5.45349267072878,0.550236083880135,3.9709043641994,20.414923974377,29.8843660656837,32.1331788254083,17.7244899528025,9.12326526862215,6.34561349625241,5.51494620518803,1.62028389576352,1.42879565254528,0.44905874525234,1.80178368773316,0,0,0,0,0,0,5.4666914686485,11.2701155381476,147.371418245113,4.30254931123221,1.77334191099179,0.560677600142307,1.06748995729705,2.22000793575444,1.8672662123986,2.69421344139376,1.9615428373615,1.51357427644931,0,0,1.5608003841516,5.70471821544449,2.69007624993242,0.469737994575059,1.45685649931318,1.26405726032024,0,0.737005903870608,0,0,0.989067717114227,0.910161361938026,1.43723628363248,0,0,0.277064115484183,0.438977620880838,4.29082914118628,1.80285670687916,2.1552114800404,23.8588215466186,2.13557388818567,1.69545520927649,2.40072876867522,1.23663035086127,15.973713482829,4.46680455195816,15.0210935694727,8.47701944902428,6.56327813034698,1.38074847963449,0,20.5905563659636,8.56392834934942,2.88253006927829,48.7017349971508,34.0932650738543,51.0512179792427,1.46368447355514,0.265059536642971,0.813357600086629,3.52447587052259,3.28017106138317,0.36497735907583,4.69348596989448,0.643240938192885,0,0.464367928031979,0.721879481669586,0.118306800039844,0.505754070234305,0.482022059766964,0.441175890929576,0,0,0,0,0.38474715694639,1.4763109092493,1.40241773803446,0,0,0,0,0,0,2.21379189377604,5.31860211925429,19.3160502319181,10.1161577931858,7.23808601363742,1.20364978706088,0,0,4.3299402607582,13.9116485970092,1.17408694235822,35.0810468059409,23.1492756288305,24.3525314860286,0,0,0.738651018262192,8.42415354501256,1.63494278517601,25.3081351764298,42.6674605625103,27.504368865023,7.52291590703926,7.55648240136301,2.30029607499127,0,0,0,0,0,0.63497894292169,18.7174328523556,1.17217447210047,1.71072446022705,4.52440967894623,2.40274446275134,2.00078502841405,0.784917590417525,0,0.7333828582095,25.3372562885244,0,0,10.1056484302251,5.2003718455683,0,0,0,0.285955987316295,0,0,0.65147236858747,0,0,26.8281045583032,15.6876022548053,8.19778527692868,0,0,2.10833939483032,23.0039861271919,0,0,5.21212704003285,0,5.19276793395697,0,0.197030760201927,0,0,2.03275699377971,2.60279707715243,1.54657762555539,1.34013012267479,0,0,0,0,0,0,0.813795071099207,0.623912584592421,1.60586089917446,1.41932173530541,0.234282829985426,3.00946099727719,0,0,0.664225598535437,0.921845842708516,5.99496939829772,0,0.343143423810856,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,8.68377327365719,8.13348458426731,4.49056151092918,5.25370511948374,6.14048698880044,1.93024705372329,1.48418066444991,0.308419387605311,0.177561725313127,0.0821271560138091,3.11552657510173,0.348631135379878,2.29632954224082,25.8653346691237,3.59115856849996,0.114814448164607,0.728364672026868,0.262248829918848,6.76799419361118,12.7075306222284,6.27479815341484,2.92278449306521,9.07744008478731,0,1.70093705276516,1.94324324491925,3.08454505380579,1.35473218771926,2.00675909541941,4.07802036872061,1.66215201785745,3.35812132083267,0.219259876645935,0,6.66770325302612,5.24823433119529,18.5465684958653,0.103041011647722,1.00726411300178,2.80532299729999,3.44559322797703,5.20048196829217,0,0.096670718292122,0.770243085573222,0.307007349452259,1.65403886981437,0.107420244868274,0.145016693914229,1.87498580315422,1.15741646340759,8.09896085268793,5.95789208831829,10.4642424245559,2.023155617111,2.32422774648643,20.46280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| ||
|short_description=p2@HDAC9 | |||
}} | }} |
Latest revision as of 14:22, 17 September 2015
Short description: | p2@HDAC9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HDAC9_5end |
Coexpression cluster: | C2888_clear_Fibroblast_papillotubular_transitionalcell_malignant_schwannoma_squamous |
Association with transcript: | 22bp_to_ENST00000524023, uc011jye.1, uc011jyf.1_5end |
EntrezGene: | HDAC9 |
HGNC: | 14065 |
UniProt: | E7EX34 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 7.88e-19 | 250 |
epithelial cell | 8.38e-18 | 253 |
vascular associated smooth muscle cell | 1.06e-09 | 32 |
mesodermal cell | 2.46e-09 | 121 |
squamous epithelial cell | 4.94e-09 | 63 |
aortic smooth muscle cell | 7.65e-07 | 10 |
smooth muscle cell | 9.54e-07 | 43 |
smooth muscle myoblast | 9.54e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
vasculature | 1.82e-12 | 78 |
vascular system | 1.82e-12 | 78 |
vessel | 2.43e-11 | 68 |
artery | 9.20e-11 | 42 |
arterial blood vessel | 9.20e-11 | 42 |
arterial system | 9.20e-11 | 42 |
systemic artery | 9.19e-10 | 33 |
systemic arterial system | 9.19e-10 | 33 |
epithelial tube open at both ends | 5.35e-09 | 59 |
blood vessel | 5.35e-09 | 59 |
blood vasculature | 5.35e-09 | 59 |
vascular cord | 5.35e-09 | 59 |
epithelial tube | 7.97e-09 | 117 |
cardiovascular system | 2.70e-07 | 109 |
aorta | 6.76e-07 | 21 |
aortic system | 6.76e-07 | 21 |
blood vessel smooth muscle | 7.65e-07 | 10 |
arterial system smooth muscle | 7.65e-07 | 10 |
artery smooth muscle tissue | 7.65e-07 | 10 |
aorta smooth muscle tissue | 7.65e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.26e-08 | 14 |
ovarian cancer | 5.63e-08 | 14 |
reproductive organ cancer | 1.15e-07 | 29 |
female reproductive organ cancer | 2.37e-07 | 27 |