FFCP PHASE1:Hg19::chr6:29911033..29911055,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3105 | |EntrezGene=3105 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=4931 | |HGNC=4931 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-6bp_to_uc011dmd.1_5end | |association_with_transcript=-6bp_to_uc011dmd.1_5end | ||
|cluster_id=chr6:29911033..29911055,+ | |||
|description=CAGE_peak_5_at_HLA-A_5end | |description=CAGE_peak_5_at_HLA-A_5end | ||
|id=chr6:29911033..29911055,+ | |id=chr6:29911033..29911055,+ | ||
|ontology_enrichment_celltype=CL:0000738!9.21e-21!140;CL:0002087!1.40e-19!119;CL:0002031!7.07e-18!124;CL:0002009!1.32e-15!65;CL:0002194!4.31e-15!63;CL:0000576!4.31e-15!63;CL:0000040!4.31e-15!63;CL:0000559!4.31e-15!63;CL:0002057!8.52e-15!42;CL:0000766!4.93e-14!76;CL:0000557!6.16e-14!71;CL:0000839!2.19e-13!70;CL:0000860!6.17e-13!45;CL:0000037!4.02e-12!172;CL:0000566!4.02e-12!172;CL:0002032!3.30e-11!165;CL:0000837!3.30e-11!165;CL:0000988!4.34e-11!182;CL:0000763!7.14e-07!112;CL:0000049!7.14e-07!112 | |ontology_enrichment_celltype=CL:0000738!9.21e-21!140;CL:0002087!1.40e-19!119;CL:0002031!7.07e-18!124;CL:0002009!1.32e-15!65;CL:0002194!4.31e-15!63;CL:0000576!4.31e-15!63;CL:0000040!4.31e-15!63;CL:0000559!4.31e-15!63;CL:0002057!8.52e-15!42;CL:0000766!4.93e-14!76;CL:0000557!6.16e-14!71;CL:0000839!2.19e-13!70;CL:0000860!6.17e-13!45;CL:0000037!4.02e-12!172;CL:0000566!4.02e-12!172;CL:0002032!3.30e-11!165;CL:0000837!3.30e-11!165;CL:0000988!4.34e-11!182;CL:0000763!7.14e-07!112;CL:0000049!7.14e-07!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.57e-22;33!CL:0002057;3.57e-22;33!CL:0000473;2.00e-21;39!CL:0000234;2.00e-21;39!CL:0000576;2.18e-14;48!CL:0000766;4.41e-13;69!CL:0002087;4.18e-09;104!CL:0000738;2.19e-07;136 | |ontology_enrichment_celltype_v019=CL:0000860;3.57e-22;33!CL:0002057;3.57e-22;33!CL:0000473;2.00e-21;39!CL:0000234;2.00e-21;39!CL:0000576;2.18e-14;48!CL:0000766;4.41e-13;69!CL:0002087;4.18e-09;104!CL:0000738;2.19e-07;136 | ||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.38e-28,136;CL:0002087,7.44e-28,115;CL:0000473,1.11e-27,48;CL:0000234,1.11e-27,48;CL:0002031,2.93e-25,120;CL:0002194,1.00e-24,59;CL:0000576,1.00e-24,59;CL:0000040,1.00e-24,59;CL:0000559,1.00e-24,59;CL:0002009,1.07e-24,61;CL:0000860,1.11e-23,42;CL:0002057,1.11e-23,42;CL:0000766,1.04e-22,72;CL:0000557,3.25e-22,67;CL:0000839,1.27e-21,66;CL:0000037,2.99e-18,168;CL:0002032,1.36e-17,161;CL:0000837,1.36e-17,161;CL:0000988,5.31e-17,177;CL:0000763,1.64e-12,108;CL:0000049,1.64e-12,108;CL:0000134,2.12e-08,354;CL:0000219,5.65e-08,386;CL:0002320,9.02e-08,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.04e-16;42 | |ontology_enrichment_development_v019=CL:0002057;1.04e-16;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.16e-14!112;UBERON:0002390!5.91e-14!102;UBERON:0003061!5.91e-14!102;UBERON:0002371!4.09e-11!80;UBERON:0001474!5.21e-09!86;UBERON:0002405!6.30e-09!115;UBERON:0004765!5.63e-07!101;UBERON:0001434!5.63e-07!101 | |ontology_enrichment_uberon=UBERON:0002193!2.16e-14!112;UBERON:0002390!5.91e-14!102;UBERON:0003061!5.91e-14!102;UBERON:0002371!4.09e-11!80;UBERON:0001474!5.21e-09!86;UBERON:0002405!6.30e-09!115;UBERON:0004765!5.63e-07!101;UBERON:0001434!5.63e-07!101 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.73e-19,98;UBERON:0003061,5.73e-19,98;UBERON:0002193,1.08e-18,108;UBERON:0002371,6.64e-18,76;UBERON:0002405,9.64e-16,93;UBERON:0001474,1.36e-15,82;UBERON:0004765,4.98e-13,90;UBERON:0001434,5.10e-12,100;UBERON:0003081,6.99e-10,203;UBERON:0002384,2.41e-07,371;UBERON:0000926,3.16e-07,315;UBERON:0004120,3.16e-07,315;UBERON:0006603,3.16e-07,315;UBERON:0002204,8.31e-07,167 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0,2.00146596706261,0.446961094427288,2.61701557230111,0,0.631719873426831,0,0.245733936501509,0,0,0.263766978228454,0,0,4.03395087871065,2.41077811209591,0.730310090387373,1.95173119516203,0,0,2.19418305034661,0.572471974262113,1.91624195102038,0.251085279189606,2.36881557818649,1.72411237844886,2.12519109546934,3.14691421479123,0,0.464448369948228,0,0,0,0.154934401160603,0.568676929949686,0,0,0,1.30206522429511,0.223915474239924,3.56283032620878,1.28787783817093,0.581592955118259,2.26725566213286,0.970336244751265,0.232429036905685,2.46700732813095,4.02618282163635,2.58923153089935,4.09857130446561,3.54723344832878,1.72372840368309,2.5819387343353,5.41705946377367,2.63539275359647,4.91231070104122,2.69668181334102,3.97909060082173,2.24650318953266,6.39337125799041,2.63881040149373,2.19410023383795,2.55734850319616,2.90209238628584,3.97169657283798,4.9825779919646,1.7587406567972,2.60741459210101,2.6062661364614,3.02699751316684,4.41933163185078,5.37986058649504,2.11255286311942,4.46469029926591,0,1.79725809834392,2.70318407114711,0,0.570025487482497,3.38158351238453,0,7.03984977845291,2.73069305631066,2.66852776159066,0,0,2.87376219977242,0,3.81621501814146,0,0,4.58727873750275,1.32171328579026,0,0,0.393419540227666,0,5.34563897398724,2.00623794468814,1.95553359980154,4.2610302516126,0,2.1167986808183,5.30290633454707,8.63982188876122,0,5.76410938765538,0.260118695119756,5.26201294731764,0.552700035571697,1.73881851441031,2.07601188426885,3.74557159325598,0,1.35971211237079,0.766440987203842,8.24705869158312,0,5.09704662918555,3.90650072313851,2.85135613334512,0,0.127986611154418,0,1.65744076430812,6.56902397536837,0.403213486449465,0.534880391567015,0.724122019413995,0,0.670700859703636,0,0,1.50401373190767,0.579386075843295,0.795285947051099,0.486634870302636,0.283604451492204,0.443458794925128,0,0.654895377488563,0.364295288292542,2.96627554227544,0.97364218096405,1.91542711029194,0.132957960518865,0.476981248610684,1.14398982156026,0.371457501329565,0,1.72046919021225,1.04142150482278,0,0,0,1.04497483268405,0.258416759169329,0,0.66944122552934,2.01414658554573,0,2.92874469057803,0,0,0,0.22452937262617,0.225222960966644,0,0.949265659568129,0.183201743930407,0,11.6334079244498,0.436094052142534,3.97577561356255,0.25326102332916,0.662045904066094,0,0,2.24271040056923,0,0.24666754841716,0.311211035399766,0.269421344139376,0,0,0,0.234321431833797,0,0.570471821544449,1.49448680551801,0,0,0.140450806702248,0,0.368502951935304,0.103325781175765,0,0.741800787835671,0,0,0.168336113954066,0,0,0.438977620880838,0,0.600952235626387,0.226864366320042,1.07633781413317,0.427114777637135,0,1.50045548042201,0.412210116953756,0.257640540045629,0,0,0,0,0.368199594569197,0.80823028409406,0,0.10075209822764,0,0,0,1.14721838155602,0.853815942907168,0.927708378250397,0.232387885739037,1.24393266018445,0.504641701751257,0.72995471815166,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0.548751427043128,0,2.41269533787914,0,0.325808305310325,0,0,0.34779121492523,0,0.433099343283221,4.1668696131895,3.99533719692656,0,0,0.246217006087397,3.04205544681009,1.93220510975347,0,0,0,0.0895585227028483,0.290633938513962,0,0,0.088048434013226,0.414656231081544,0,1.00993946741104,0.571481048629521,0,1.17217447210047,5.13217338068116,0,1.8020583470635,1.42913216315289,0,0,0,0.258543431515556,0,0,0,0,0,0,0.266422179016099,0.428933980974443,2.17048642156577,0.823240336780769,0,0.355391948742546,0.791951872933429,2.1100756394171,0,0.099972991182057,4.86495122564762,2.51128545716063,12.6500363689819,0,0,0,1.88215698667853,1.84928690295345,0,0.784596007954691,0.197030760201927,0.431255149719035,0.77005821767849,0,0,0.773288812777695,0,0.637938751653163,2.99602809578873,0,0.414415513436035,0,0,0,1.87173775377726,2.14114786556594,1.89242898040722,0.585707074963566,0,0,1.03473071292505,0,0,0.173767228936166,0,0.343143423810856,0.413536052245775,2.37285620900479,5.01619521676188,0,0,0.30239029332968,0,0,0.841980283299221,0,0,0.160853921143607,4.45254199334973,0.154209693802656,1.06537035187876,0.164254312027618,0,0.581051892299796,0,0,1.01289087829486,0.459257792658427,0.364182336013434,0.524497659837696,0,0.0770153371044148,0,0,0,0,1.02056223165909,0.215915916102139,0,0,3.01013864312912,0,0,0,0,0.261435451024901,0,0.328014645699706,0.325378394664303,0.206082023295445,0.0915694648183434,0,0,0,0,0,0,0,0,0.107420244868274,0,0.170453254832202,0,0.826424576804891,0,0,0,0.464845549297286,5.66662224295152,0.6970372701606,0.308033580176089,0,0,0,0,0,0.316379424718726,0.762520775695299,1.02359116524534,0.855877976067841,0,0.78494864019923,0,0.274537029736055,0.353437207037059,0,0,0,0,0.731140468893853,0,0.818999468447914,0,0,0,0,0.876901770507525,0,0,0,0.92947049429925,0,0,0.0982490410131212,0.35667105148125,1.06428319221179,1.89996871767898,4.93942339439853,0,0,0,1.34060455107157,1.08890984861323,0.0941438007767792,0,6.73885902670502,2.66058092122005,0,2.53723804616085,0.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| ||
|short_description=p5@HLA-A | |short_description=p5@HLA-A | ||
}} | }} |
Latest revision as of 15:06, 17 September 2015
Short description: | p5@HLA-A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_HLA-A_5end |
Coexpression cluster: | NA |
Association with transcript: | -6bp_to_uc011dmd.1_5end |
EntrezGene: | HLA-A |
HGNC: | 4931 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 5.38e-28 | 136 |
nongranular leukocyte | 7.44e-28 | 115 |
defensive cell | 1.11e-27 | 48 |
phagocyte | 1.11e-27 | 48 |
hematopoietic lineage restricted progenitor cell | 2.93e-25 | 120 |
monopoietic cell | 1.00e-24 | 59 |
monocyte | 1.00e-24 | 59 |
monoblast | 1.00e-24 | 59 |
promonocyte | 1.00e-24 | 59 |
macrophage dendritic cell progenitor | 1.07e-24 | 61 |
classical monocyte | 1.11e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.11e-23 | 42 |
myeloid leukocyte | 1.04e-22 | 72 |
granulocyte monocyte progenitor cell | 3.25e-22 | 67 |
myeloid lineage restricted progenitor cell | 1.27e-21 | 66 |
hematopoietic stem cell | 2.99e-18 | 168 |
hematopoietic oligopotent progenitor cell | 1.36e-17 | 161 |
hematopoietic multipotent progenitor cell | 1.36e-17 | 161 |
hematopoietic cell | 5.31e-17 | 177 |
myeloid cell | 1.64e-12 | 108 |
common myeloid progenitor | 1.64e-12 | 108 |
mesenchymal cell | 2.12e-08 | 354 |
motile cell | 5.65e-08 | 386 |
connective tissue cell | 9.02e-08 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.73e-19 | 98 |
blood island | 5.73e-19 | 98 |
hemolymphoid system | 1.08e-18 | 108 |
bone marrow | 6.64e-18 | 76 |
immune system | 9.64e-16 | 93 |
bone element | 1.36e-15 | 82 |
skeletal element | 4.98e-13 | 90 |
skeletal system | 5.10e-12 | 100 |
lateral plate mesoderm | 6.99e-10 | 203 |
connective tissue | 2.41e-07 | 371 |
mesoderm | 3.16e-07 | 315 |
mesoderm-derived structure | 3.16e-07 | 315 |
presumptive mesoderm | 3.16e-07 | 315 |
musculoskeletal system | 8.31e-07 | 167 |