FFCP PHASE1:Hg19::chr1:35247057..35247079,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2707 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4285 | |||
|TSSclassifier=strong | |||
|UniProt=O75712 | |||
|association_with_transcript=267bp_to_ENST00000373366,NM_024009,uc001bxx.2_5end | |||
|cluster_id=chr1:35247057..35247079,+ | |||
|coexpression_cluster_id=C226 | |||
|description=CAGE_peak_3_at_GJB3_5end | |||
|id=chr1:35247057..35247079,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.78e-34!254;CL:0002076!3.04e-28!43;CL:0000223!6.06e-22!59;CL:0002368!1.68e-12!13;CL:0002251!1.75e-12!21;CL:0002159!1.53e-08!13;CL:0002202!2.96e-08!9;CL:0002632!2.96e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;8.66e-24;42!CL:0002368;4.29e-17;13!CL:0002251;3.21e-15;20!CL:0002159;1.76e-12;14!CL:0002202;2.08e-10;9!CL:0002632;2.08e-10;9!CL:0000622;9.54e-10;5!CL:0000244;4.07e-09;4!CL:0000731;4.07e-09;4!CL:0000349;5.51e-09;19!CL:0000154;5.01e-08;6!CL:0002328;4.57e-07;3!CL:0000307;4.80e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.71e-41,253;CL:0002076,4.86e-33,42;CL:0000223,5.75e-28,58;CL:0002368,4.30e-17,13;CL:0002251,3.53e-15,20;CL:0002159,1.74e-12,14;CL:0002202,2.04e-10,9;CL:0002632,2.04e-10,9;CL:0000622,9.99e-10,5;CL:0000244,4.16e-09,4;CL:0000731,4.16e-09,4;CL:0000349,5.10e-09,19;CL:0000154,5.20e-08,6;CL:0002328,4.67e-07,3;CL:0000068,4.76e-07,3;CL:0000069,4.76e-07,3;CL:0000307,4.76e-07,3;CL:0000377,4.76e-07,3;CL:0002077,8.15e-07,34;CL:0000076,9.42e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000223;2.90e-16;58!CL:0000377;4.80e-07;3!UBERON:0008947;7.50e-07;29 | |||
|ontology_enrichment_disease=DOID:305!6.47e-19!106;DOID:1749!6.28e-12!14;DOID:299!1.63e-11!25;DOID:0050687!2.08e-10!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.70e-16;14!DOID:299;1.35e-09;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.80e-16,106;DOID:1749,4.67e-16,14;DOID:299,1.50e-09,25;DOID:0050687,2.72e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.53e-22!169;UBERON:0000925!9.53e-22!169;UBERON:0006595!9.53e-22!169;UBERON:0001004!4.18e-18!72;UBERON:0000065!2.61e-16!53;UBERON:0000077!2.56e-15!130;UBERON:0001007!6.68e-15!155;UBERON:0001555!6.68e-15!155;UBERON:0007026!6.68e-15!155;UBERON:0000072!1.55e-14!46;UBERON:0004921!2.26e-12!129;UBERON:0004185!2.26e-12!129;UBERON:0000064!2.90e-12!219;UBERON:0001041!7.64e-12!98;UBERON:0001557!6.98e-11!19;UBERON:0008947!8.25e-11!38;UBERON:0003258!8.25e-11!38;UBERON:0005631!1.10e-09!14;UBERON:0000158!1.10e-09!14;UBERON:0000062!2.08e-09!511;UBERON:0001737!4.43e-09!9;UBERON:0000161!1.02e-08!35;UBERON:0005911!8.91e-08!82;UBERON:0005795!9.56e-08!22;UBERON:0003124!3.25e-07!7;UBERON:0000995!3.58e-07!21;UBERON:0000365!3.89e-07!5;UBERON:0007196!6.39e-07!14;UBERON:0001558!6.39e-07!14;UBERON:0000166!7.76e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.49e-13;9!UBERON:0001557;1.49e-13;9!UBERON:0000065;2.28e-13;44!UBERON:0000072;1.41e-12;37!UBERON:0001004;9.04e-12;65!UBERON:0000365;1.55e-10;5!UBERON:0005631;4.01e-10;10!UBERON:0000158;4.01e-10;10!UBERON:0000486;1.14e-09;12!UBERON:0005910;1.14e-08;6!UBERON:0000165;2.81e-08;28!UBERON:0000161;6.09e-08;19!UBERON:0000166;6.09e-08;19!UBERON:0000344;1.96e-07;20!UBERON:0007196;3.38e-07;15!UBERON:0001558;3.38e-07;15!UBERON:0001041;3.88e-07;14!UBERON:0004815;4.57e-07;3!UBERON:0002031;4.57e-07;3!UBERON:0005911;7.45e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.68e-22,160;UBERON:0000925,2.68e-22,160;UBERON:0006595,2.68e-22,160;UBERON:0001004,5.57e-22,74;UBERON:0000065,1.01e-18,54;UBERON:0000072,2.03e-15,47;UBERON:0001041,2.91e-15,87;UBERON:0001007,5.82e-14,145;UBERON:0001555,5.82e-14,145;UBERON:0007026,5.82e-14,145;UBERON:0001737,1.17e-13,9;UBERON:0008947,1.18e-13,38;UBERON:0003258,1.18e-13,38;UBERON:0004921,1.42e-13,118;UBERON:0005631,3.61e-13,14;UBERON:0000158,3.61e-13,14;UBERON:0001557,2.86e-12,19;UBERON:0000365,1.54e-10,5;UBERON:0000166,1.77e-09,22;UBERON:0000161,4.48e-09,36;UBERON:0005910,1.13e-08,6;UBERON:0003102,1.18e-08,99;UBERON:0003124,2.27e-08,7;UBERON:0000165,6.83e-08,29;UBERON:0000930,6.83e-08,29;UBERON:0000344,1.90e-07,20;UBERON:0004923,2.45e-07,66;UBERON:0007196,3.57e-07,15;UBERON:0001558,3.57e-07,15;UBERON:0004815,4.67e-07,3;UBERON:0002031,4.67e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,3.68600904752263,10.4670175195864,9.82986174585775,8.96807725976742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,24.824373060931,26.506120852486,32.5383528946773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.0654895377488563,43.7154345951051,30.7751087511076,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,52.3312862571041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.3349988682675,11.7280831854059,10.6117700293931,0.121973706129595,0,0,0.10366105501537,0,0,0,0,1.38134921352481,0,0,2.24782920075703,2.69735504124963,2.89213235860178,3.30881918197182,3.26819166138609,3.79632990577755,2.42696354688296,3.92442930250692,3.07797725557112,0,0,0,0,0,1.96565443335525,0,0,0.368965315629341,0,27.7668222083823,20.2323155863715,29.5555178890195,34.3503131538145,0,0,0,0,0,0,0,0,4.74122638775565,0.858486162094873,0,0,0,11.2480600784132,2.85569617938061,10.0660319042094,41.5551545341216,40.6887513919547,29.9038489748865,0,0,0.414656231081544,0.144119953416961,0.12624243342638,0.063497894292169,0,0,5.13217338068116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0.184369168541703,0,0,0,0,0,0,10.3063374291728,3.32870879020994,5.74541557326393,0,0,0,0,0,0,0,0,0,0,0,0,0,12.4314011588037,29.5579974484227,0,0,0.131124414959424,0.451199612907412,2.23344477602803,0.784349769176855,0,0.422206515571503,0,0,0,0,0,0,2.03901018436031,1.66215201785745,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0,12.0595762979196,11.7010844286574,0,0,0,0,0,0,0,0,0,26.9414412038394,24.9847087574638,9.06050258711547,36.6191166697091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,25.3064156468097,33.5151137767894,22.8671068208777,0.188287601553558,35.3014405590408,30.3248656201726,48.3338867354977,25.0398506225586,0,0,0,0,0,0,0,0,0,0,6.12600539952579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,1.12284324244932,0,0,0,0,15.9958804774252,2.67268212749375,9.52198176507619,0,0.562677665642051,0,0,0,0,0,0,0.102268682502155,0,0,6.0211795268709,0.179021174675609,0,0.295930216910801,0,0,0,0.0927680981618513,0,1.04171104434093,0,0,1.2517279311405,0.254253650292766,0.236387681767936,0,0,0,0,0,0,0.442317039724898,0.591095237907095,0.219385397153973,0.10893846351899,13.3846794507459,1.38510465306835,0,0,0,0,5.42301971544263,1.74035427463538,2.13213910407454,0,0,0.166211681900156,0,0,0,0,0,0,0.489698424477443,0,0,1.99052386215701,0,0,0,0.123563938946503,0,0,0,0,0,9.78323094660449,1.21390189767046,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0.138674673013139,0.173559738335131,20.6763958544337,3.04707223031409,1.04836000945218,0,0.0967563312890851,0.219267951258557,0.492692742319255,7.75912131907355,0,0.677942222341597,0,0,0.189932387867636,0.782205530939212,0.480952921509202,0.426905989478705,3.19695375331408,1.29681375438695,0,0,2.16082196982225,0.248505071130865,7.77790314235425,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0.2249738915515,1.5476039091159,0.182248669974074,11.404779378375,0.157611414598396,0.0524545881349981,0,0,12.0906574311251,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,2.11444506695002,0,0,0,0,0,0,27.4486740841178,0,0,0,0,0,0,0,0.3755727921195,0,0,0.0620964029413835,0,0.124980407962107,0,0,0,0,0,0.149254802886874,0,0.554805861502613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0.38582807654183,0,0,0,0,0.138258436151731,0,0,0,0,0,7.39592431755195,0,0.106691729694141,0,0,0,18.6039745266861,39.8129446421103,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0.205116364240755,0,0.484100767249525,0.161475645631851,0,1.27592034051333,0.825788063434183,20.7274316329497,12.9388746088379,0,0,0,0.0752103283492573,0,0,0,0.982631505060581,6.2099556211159,0.135075169236789,0,0,0.0634158101939068,0,0,0.496211178389294,0,0.766574565837572,0,0,0,0,0.266107110487916,0,0,0.0679697329768317,0.394636641377094,0.827356886187777,1.22354542081276,0.235479278551542,0,2.80272163313789,0,0,0,0,0,0,0,0,15.3339961480647,9.2187977630733,9.67763526539729,0,0,0.170426809518315,0,7.10231292486555,1.86123831398592,1.91107787795487,0.111855431797792,3.04265724207253,4.87671699929078,0,0,0,2.4285549652957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60698544745092,8.11658204946091,3.93182696776924,0.730336388246517,0,0,0,0.611923411718232,0,0,0,0,0.865253124247578,0,0,0,0,0,0,0,0,0.267964130156178,0,0,2.13233981900981,0,0.258355639344024,0.186224142887574,0.224263725161227,0,0,10.8858373948481,1.36893320434112,4.98405192307948,2.00822175099494,0.665320713092027,5.77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|short_description=p3@GJB3 | |||
}} |
Latest revision as of 17:50, 17 September 2015
Short description: | p3@GJB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GJB3_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | 267bp_to_ENST00000373366, NM_024009, uc001bxx.2_5end |
EntrezGene: | GJB3 |
HGNC: | 4285 |
UniProt: | O75712 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.71e-41 | 253 |
endo-epithelial cell | 4.86e-33 | 42 |
endodermal cell | 5.75e-28 | 58 |
respiratory epithelial cell | 4.30e-17 | 13 |
epithelial cell of alimentary canal | 3.53e-15 | 20 |
general ecto-epithelial cell | 1.74e-12 | 14 |
epithelial cell of tracheobronchial tree | 2.04e-10 | 9 |
epithelial cell of lower respiratory tract | 2.04e-10 | 9 |
acinar cell | 9.99e-10 | 5 |
transitional epithelial cell | 4.16e-09 | 4 |
urothelial cell | 4.16e-09 | 4 |
extraembryonic cell | 5.10e-09 | 19 |
protein secreting cell | 5.20e-08 | 6 |
bronchial epithelial cell | 4.67e-07 | 3 |
duct epithelial cell | 4.76e-07 | 3 |
branched duct epithelial cell | 4.76e-07 | 3 |
tracheal epithelial cell | 4.76e-07 | 3 |
tracheoblast | 4.76e-07 | 3 |
ecto-epithelial cell | 8.15e-07 | 34 |
squamous epithelial cell | 9.42e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.68e-22 | 160 |
endoderm | 2.68e-22 | 160 |
presumptive endoderm | 2.68e-22 | 160 |
respiratory system | 5.57e-22 | 74 |
respiratory tract | 1.01e-18 | 54 |
segment of respiratory tract | 2.03e-15 | 47 |
foregut | 2.91e-15 | 87 |
digestive system | 5.82e-14 | 145 |
digestive tract | 5.82e-14 | 145 |
primitive gut | 5.82e-14 | 145 |
larynx | 1.17e-13 | 9 |
respiratory primordium | 1.18e-13 | 38 |
endoderm of foregut | 1.18e-13 | 38 |
subdivision of digestive tract | 1.42e-13 | 118 |
extraembryonic membrane | 3.61e-13 | 14 |
membranous layer | 3.61e-13 | 14 |
upper respiratory tract | 2.86e-12 | 19 |
urothelium | 1.54e-10 | 5 |
oral opening | 1.77e-09 | 22 |
orifice | 4.48e-09 | 36 |
transitional epithelium | 1.13e-08 | 6 |
surface structure | 1.18e-08 | 99 |
chorion | 2.27e-08 | 7 |
mouth | 6.83e-08 | 29 |
stomodeum | 6.83e-08 | 29 |
mucosa | 1.90e-07 | 20 |
organ component layer | 2.45e-07 | 66 |
tracheobronchial tree | 3.57e-07 | 15 |
lower respiratory tract | 3.57e-07 | 15 |
lower respiratory tract epithelium | 4.67e-07 | 3 |
epithelium of bronchus | 4.67e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.80e-16 | 106 |
squamous cell carcinoma | 4.67e-16 | 14 |
adenocarcinoma | 1.50e-09 | 25 |
cell type cancer | 2.72e-09 | 143 |