FFCP PHASE1:Hg19::chr6:30890348..30890372,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:30890348..30890372,+
|short_description=p5@VARS2
|description=CAGE_peak_5_at_VARS2_5end
|association_with_transcript=0bp_to_ENST00000477052_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57176 | |EntrezGene=57176 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21642 | |HGNC=21642 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000477052_5end | |||
|cluster_id=chr6:30890348..30890372,+ | |||
|coexpression_cluster_id=C1044 | |||
|description=CAGE_peak_5_at_VARS2_5end | |||
|id=chr6:30890348..30890372,+ | |||
|ontology_enrichment_celltype=CL:1000507!1.19e-22!12;CL:1000494!1.19e-22!12;CL:1000449!3.82e-21!16;CL:1000497!1.31e-18!18;CL:0002518!1.31e-18!18;CL:0002681!3.24e-16!13;CL:0002584!3.24e-16!13;CL:0000239!8.62e-15!3;CL:1000615!8.62e-15!3;CL:0002306!8.62e-15!3;CL:0000066!3.53e-12!254;CL:0002327!6.09e-11!4;CL:0002536!5.67e-10!2;CL:0002537!8.22e-09!5;CL:0002541!3.63e-07!3;CL:0000349!9.02e-07!3;CL:0002577!9.02e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000239;6.16e-30;3!CL:1000615;6.16e-30;3!CL:0002306;6.16e-30;3!CL:0000349;4.81e-24;19!CL:1000507;4.98e-24;10!CL:1000494;4.98e-24;10!CL:1000449;1.10e-22;15!CL:0002327;5.54e-22;4!CL:0002681;3.93e-20;12!CL:0002584;3.93e-20;12!CL:1000497;5.63e-20;17!CL:0002518;5.63e-20;17!CL:0002536;1.87e-19;2!CL:0002541;5.73e-14;3!CL:0002537;6.87e-09;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,6.17e-30,3;CL:1000615,6.17e-30,3;CL:0002306,6.17e-30,3;CL:1000507,4.31e-24,10;CL:1000494,4.31e-24,10;CL:0000349,4.90e-24,19;CL:1000449,9.29e-23,15;CL:0002327,4.63e-22,4;CL:0002681,3.56e-20,12;CL:0002584,3.56e-20,12;CL:1000497,4.85e-20,17;CL:0002518,4.85e-20,17;CL:0002536,1.41e-19,2;CL:0002541,6.12e-14,3;CL:0002537,6.87e-09,5;CL:0000066,4.15e-08,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3111;1.33e-10;1!DOID:3603;1.33e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,1.46e-10,1;DOID:3603,1.46e-10,1 | |||
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| ||
|short_description=p5@VARS2 | |||
}} | }} |
Latest revision as of 19:25, 17 September 2015
Short description: | p5@VARS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_VARS2_5end |
Coexpression cluster: | C1044_Renal_amniotic_Mammary_chorionic_bile_prostate_Amniotic |
Association with transcript: | 0bp_to_ENST00000477052_5end |
EntrezGene: | VARS2 |
HGNC: | 21642 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 6.17e-30 | 3 |
kidney cortex tubule cell | 6.17e-30 | 3 |
epithelial cell of proximal tubule | 6.17e-30 | 3 |
kidney tubule cell | 4.31e-24 | 10 |
nephron tubule epithelial cell | 4.31e-24 | 10 |
extraembryonic cell | 4.90e-24 | 19 |
epithelial cell of nephron | 9.29e-23 | 15 |
mammary gland epithelial cell | 4.63e-22 | 4 |
kidney cortical cell | 3.56e-20 | 12 |
renal cortical epithelial cell | 3.56e-20 | 12 |
kidney cell | 4.85e-20 | 17 |
kidney epithelial cell | 4.85e-20 | 17 |
amniotic epithelial cell | 1.41e-19 | 2 |
chorionic membrane mesenchymal stem cell | 6.12e-14 | 3 |
amnion mesenchymal stem cell | 6.87e-09 | 5 |
epithelial cell | 4.15e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 7.86e-33 | 14 |
membranous layer | 7.86e-33 | 14 |
renal cortex tubule | 6.17e-30 | 3 |
region of nephron tubule | 6.17e-30 | 3 |
proximal tubule | 6.17e-30 | 3 |
nephron tubule epithelium | 4.31e-24 | 10 |
nephron epithelium | 9.29e-23 | 15 |
renal tubule | 9.29e-23 | 15 |
nephron tubule | 9.29e-23 | 15 |
nephron | 9.29e-23 | 15 |
uriniferous tubule | 9.29e-23 | 15 |
nephrogenic mesenchyme | 9.29e-23 | 15 |
amnion | 3.38e-22 | 7 |
mammary gland | 4.63e-22 | 4 |
mammary bud | 4.63e-22 | 4 |
mammary ridge | 4.63e-22 | 4 |
mammary placode | 4.63e-22 | 4 |
excretory tube | 2.58e-21 | 16 |
kidney epithelium | 2.58e-21 | 16 |
cortex of kidney | 3.56e-20 | 12 |
renal parenchyma | 3.56e-20 | 12 |
somatic layer of lateral plate mesoderm | 1.84e-19 | 8 |
extraembryonic structure | 6.76e-19 | 24 |
cortex | 3.97e-16 | 15 |
parenchyma | 3.97e-16 | 15 |
urinary system structure | 3.09e-15 | 47 |
renal system | 6.80e-15 | 48 |
egg chorion | 6.12e-14 | 3 |
kidney | 5.73e-13 | 26 |
kidney mesenchyme | 5.73e-13 | 26 |
upper urinary tract | 5.73e-13 | 26 |
kidney rudiment | 5.73e-13 | 26 |
kidney field | 5.73e-13 | 26 |
chorion | 5.85e-13 | 7 |
external ectoderm | 2.48e-11 | 8 |
cavitated compound organ | 8.30e-11 | 31 |
organ component layer | 2.78e-08 | 66 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 1.46e-10 | 1 |
mucinous cystadenocarcinoma | 1.46e-10 | 1 |