FFCP PHASE1:Hg19::chr13:76334992..76335005,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4008 | |EntrezGene=4008 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6646 | |HGNC=6646 | ||
|TSSclassifier=strong | |||
|UniProt=E9PLH4,Q8WWI1 | |UniProt=E9PLH4,Q8WWI1 | ||
|association_with_transcript=195bp_to_ENST00000465261,NM_015842,uc001vjv.2_5end | |association_with_transcript=195bp_to_ENST00000465261,NM_015842,uc001vjv.2_5end | ||
|cluster_id=chr13:76334992..76335005,+ | |||
|coexpression_cluster_id=C55 | |||
|description=CAGE_peak_21_at_LMO7_5end | |description=CAGE_peak_21_at_LMO7_5end | ||
|id=chr13:76334992..76335005,+ | |id=chr13:76334992..76335005,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002178;8.68e-12;3!CL:0002563;1.62e-09;4!CL:0002379;1.83e-09;1!CL:0000182;4.31e-07;12!CL:0002251;7.39e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,6.96e-12,3;CL:0000223,1.39e-10,58;CL:0002563,1.55e-09,4;CL:0002379,2.26e-09,1;CL:0000182,4.31e-07,12;CL:0002251,6.84e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.05e-12;11!UBERON:0009497;8.89e-11;13!UBERON:0006242;1.83e-09;1!UBERON:0003104;2.86e-09;31 | |||
|ontology_enrichment_disease=DOID:305!2.37e-18!106;DOID:0050687!9.84e-12!143 | |||
|ontology_enrichment_disease_v019=DOID:3493;3.37e-17;2!DOID:3119;8.61e-15;14!DOID:299;2.01e-11;25!DOID:3620;1.83e-09;1!DOID:3565;1.83e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,2.04e-17,2;DOID:3119,7.67e-15,14;DOID:299,1.76e-11,25;DOID:3620,2.26e-09,1;DOID:3565,2.26e-09,1;DOID:305,2.34e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0001007!2.52e-15!155;UBERON:0001555!2.52e-15!155;UBERON:0007026!2.52e-15!155;UBERON:0004921!7.10e-15!129;UBERON:0004185!7.10e-15!129;UBERON:0004119!3.01e-14!169;UBERON:0000925!3.01e-14!169;UBERON:0006595!3.01e-14!169;UBERON:0000077!3.35e-11!130;UBERON:0007023!1.04e-10!115;UBERON:0002619!1.11e-10!22;UBERON:0001950!2.86e-10!20;UBERON:0001869!6.11e-10!32;UBERON:0002791!1.65e-09!33;UBERON:0000481!1.87e-09!347;UBERON:0005911!2.92e-09!82;UBERON:0002020!4.18e-09!34;UBERON:0003528!4.18e-09!34;UBERON:0001893!4.18e-09!34;UBERON:0000956!5.20e-09!25;UBERON:0000203!5.20e-09!25;UBERON:0002780!8.54e-09!41;UBERON:0001890!8.54e-09!41;UBERON:0006240!8.54e-09!41;UBERON:0003080!1.80e-08!42;UBERON:0002294!4.63e-08!7;UBERON:0001173!4.63e-08!7;UBERON:0004912!4.63e-08!7;UBERON:0001041!1.19e-07!98;UBERON:0000065!4.41e-07!53;UBERON:0000064!6.70e-07!219;UBERON:0000062!8.30e-07!511;UBERON:0003929!9.28e-07!54 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.50e-34;22!UBERON:0000160;9.56e-29;17!UBERON:0004921;1.11e-19;33!UBERON:0002108;1.39e-15;4!UBERON:0000059;1.85e-12;11!UBERON:0001052;1.52e-09;4!UBERON:0001242;1.62e-09;4!UBERON:0001262;1.62e-09;4!UBERON:0004786;1.62e-09;4!UBERON:0004808;1.62e-09;4!UBERON:0001277;1.62e-09;4!UBERON:0001155;6.77e-09;9!UBERON:0004907;8.39e-08;5!UBERON:0001555;1.83e-07;54!UBERON:0000945;2.02e-07;5!UBERON:0010039;2.02e-07;5!UBERON:0001007;3.31e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,1.59e-30,25;UBERON:0000160,7.82e-29,17;UBERON:0002108,1.16e-15,4;UBERON:0004921,2.59e-13,118;UBERON:0000059,1.77e-12,11;UBERON:0001007,6.05e-12,145;UBERON:0001555,6.05e-12,145;UBERON:0007026,6.05e-12,145;UBERON:0004119,1.45e-10,160;UBERON:0000925,1.45e-10,160;UBERON:0006595,1.45e-10,160;UBERON:0001052,1.49e-09,4;UBERON:0001242,1.55e-09,4;UBERON:0001262,1.55e-09,4;UBERON:0004786,1.55e-09,4;UBERON:0004808,1.55e-09,4;UBERON:0001277,1.55e-09,4;UBERON:0001155,6.50e-09,9;UBERON:0004907,8.25e-08,5;UBERON:0011216,1.09e-07,223;UBERON:0003929,5.25e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0.276350017785848,0,0.14828656316206,0.267540828089713,0,0,0,0,0,0,0,0.950452044448374,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0.241011029883482,0.110293972732394,0.435758888184812,0.474541238222193,0,0.392442930250692,0,0,0,0,0,0,0,0,0,4.30459534900897,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234282829985426,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.10922128611516,0,0,0.34444334449382,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476463550915578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12284324244932,0,0,0,0,0.71623345421307,0.296964680832639,0.614321404198464,0,0.140669416410513,0,0,0,0,0.828851746593443,2.01546198283421,0,0.246169610922139,0,0.179736702294654,0.358042349351218,0,0.197286811273867,0,0,0.969332746095218,0.278304294485554,0,0,0,0,0,0.254253650292766,3.07303986298317,0,0,0,0,0.482385754501632,0,0,0,0,0,0.139423744278603,0.153900517007594,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,3.53382678584852,0,0,1.23840590304675,2.4441205797345,0,0,0,0,0,0.468528891450678,0,0,0,0,1.20990716048664,0,0.126373159256976,0,0,0,0,0,0,0,0,0.173559738335131,0.293977192243133,0,0,0,0.19351266257817,0.365446585430928,0.164230914106418,0.387956065953678,0.264768380074501,0,0,0,0.189932387867636,0.977756913674015,0.240476460754601,1.28071796843612,0,1.58499458869517,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0.134366944973453,0,0,7.24805277226458,8.40641755487898,9.16688196416914,0,0,0,0.408610218334727,0,0,0,0,0.77380195455795,0.121499113316049,0,0,0.104909176269996,0.316801009558219,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.320362237703084,0.471612915298998,0.414239055347196,0,0,0,0,0,0,0,0,0.785270481251171,0,0.244052529803926,0.3755727921195,0,0,0.0620964029413835,0,0,0,0,1.17632909849086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0.422624246717254,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0.192687675289379,0,0.159633859057151,0.205116364240755,0.252071696221718,0.207471757392654,0,0,0,0.11796972334774,0.183428598521679,0,0,0,0,0,0,0,0,0,0.739280431085226,0,0,0.413373593002368,0.0634158101939068,1.09394961803644,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0.0657727735628491,0.472775363535873,0.111231401892069,0.078493092850514,0.942693539496011,6.72653191953094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846774100381858,0.9164274741762,0,0,0.111855431797792,1.57040373784389,1.82876887473404,0,0.102662806856247,0,0,0,0.198950775161368,0,0.5647304101948,0,0.301925687133347,3.08696632431779,2.40415516554353,2.35158648180761,0,0.471353094203252,0,0,0,0,0,0,0,0,0.705789743431384,0.401206833445841,0.730336388246517,0,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0.213233981900981,0,0.193766729508018,0.434523000071005,0.224263725161227,0,0,0.217716747896961,0,0.134704106029175,0.143444410785353,0,0,0.213454691755431,0,3.86248369058324,0,0,0,0,0,0 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| ||
|short_description=p21@LMO7 | |short_description=p21@LMO7 | ||
}} | }} |
Latest revision as of 00:12, 18 September 2015
Short description: | p21@LMO7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_21_at_LMO7_5end |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | 195bp_to_ENST00000465261, NM_015842, uc001vjv.2_5end |
EntrezGene: | LMO7 |
HGNC: | 6646 |
UniProt: | E9PLH4Q8WWI1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 6.96e-12 | 3 |
endodermal cell | 1.39e-10 | 58 |
intestinal epithelial cell | 1.55e-09 | 4 |
meningothelial cell | 2.26e-09 | 1 |
hepatocyte | 4.31e-07 | 12 |
epithelial cell of alimentary canal | 6.84e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 1.59e-30 | 25 |
intestine | 7.82e-29 | 17 |
small intestine | 1.16e-15 | 4 |
subdivision of digestive tract | 2.59e-13 | 118 |
large intestine | 1.77e-12 | 11 |
digestive system | 6.05e-12 | 145 |
digestive tract | 6.05e-12 | 145 |
primitive gut | 6.05e-12 | 145 |
endoderm-derived structure | 1.45e-10 | 160 |
endoderm | 1.45e-10 | 160 |
presumptive endoderm | 1.45e-10 | 160 |
rectum | 1.49e-09 | 4 |
intestinal mucosa | 1.55e-09 | 4 |
wall of intestine | 1.55e-09 | 4 |
gastrointestinal system mucosa | 1.55e-09 | 4 |
gastrointestinal system epithelium | 1.55e-09 | 4 |
intestinal epithelium | 1.55e-09 | 4 |
colon | 6.50e-09 | 9 |
lower digestive tract | 8.25e-08 | 5 |
organ system subdivision | 1.09e-07 | 223 |
gut epithelium | 5.25e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 2.04e-17 | 2 |
gastrointestinal system cancer | 7.67e-15 | 14 |
adenocarcinoma | 1.76e-11 | 25 |
central nervous system cancer | 2.26e-09 | 1 |
meningioma | 2.26e-09 | 1 |
carcinoma | 2.34e-09 | 106 |